Critical fluctuations in proteins native states

We study a large data set of protein structure ensembles of very diverse sizes determined by nuclear magnetic resonance. By examining the distance-dependent correlations in the displacement of residues pairs and conducting finite size scaling analysis it was found that the correlations and susceptibility behave as in systems near a critical point implying that, at the native state, the motion of each amino acid residue is felt by every other residue up to the size of the protein molecule. Furthermore certain protein's shapes corresponding to maximum susceptibility were found to be more probable than others. Overall the results suggest that the protein's native state is critical, implying that despite being posed near the minimum of the energy landscape, they still preserve their dynamic flexibility

Longitudinal Optogenetic Motor Mapping Revealed Structural and Functional Impairments and Enhanced Corticorubral Projection after Contusive Spinal Cord Injury in Mice

Current evaluation of impairment and repair after spinal cord injury (SCI) is largely dependent on behavioral assessment and histological analysis of injured tissue and pathways. Here, we evaluated whether transcranial optogenetic mapping of motor cortex could reflect longitudinal structural and functional damage and recovery after SCI. In Thy1-Channelrhodopsin2 transgenic mice, repeated motor mappings were made by recording optogenetically evoked electromyograms (EMGs) of a hindlimb at baseline and 1 day and 2, 4, and 6 weeks after mild, moderate, and severe spinal cord contusion. Injuries caused initial decreases in EMG amplitude, losses of motor map, and subsequent partial recoveries, all of which corresponded to injury severity. Reductions in map size were positively correlated with motor performance, as measured by Basso Mouse Scale, rota-rod, and grid walk tests, at different time points, as well as with lesion area at spinal cord epicenter at 6 weeks post-SCI. Retrograde tracing with Fluoro-Gold showed decreased numbers of cortico- and rubrospinal neurons, with the latter being negatively correlated with motor map size. Combined retro- and anterograde tracing and immunostaining revealed more neurons activated in red nucleus by cortical stimulation and enhanced corticorubral axons and synapses in red nucleus after SCI. Electrophysiological recordings showed lower threshold and higher amplitude of corticorubral synaptic response after SCI. We conclude that transcranial optogenetic motor mapping is sensitive and efficient for longitudinal evaluation of impairment and plasticity of SCI, and that spinal cord contusion induces stronger anatomical and functional corticorubral connection that may contribute to spontaneous recovery of motor function

Effect of Achyranthes bidentata Blume extract on carrageenan-induced chronic prostatitis in rats

Purpose: To investigate the effect of Achyranthes bidentata Blume. Extract (ABBE) on carrageenaninduced chronic prostatitis in rats.Methods: Experimental chronic non-bacterial prostatitis (CNP) was induced in rats by 1 % carrageenan (0.1 mL). Prostate index (PI) and prostate specific antigen (PSA) were determined after 3 weeks of adiministration. Relative inflammatory factors, viz, tumor necrosis factor-α (TNF-α), interleukin1β (IL-1β), cyclooxygenase-2 (COX-2), prostaglandin E2 (PEG2), transforming growth factor-β1 (TGF-β1) and connective tissue growth factor (CTGF) in the prostate tissues of all group rats were measured.Results: In CNP model, ABBE decreased PI and PSA compared with untreated control group (p < 0.01). Morphometric analysis showed a significant reduction in chronic inflammatory cell infiltrates and interstitial fibrosis compared to control group. Reduced values of TNF-α, IL-1β, COX-2, PEG2 were observed in ABBE-treated groups compared with model group respectively (p < 0.01). Moreover, the levels of TGF-β1 and CTGF in ABBE-treated groups were significantly lower, and in addition, there was alleviation of the inflammatory state of the prostate gland (p < 0.01).Conclusion: ABBE showed antichronic non-bacterial prostatitis effect by multiple ways in rats, thus indicating its potential suitability for the treatment of chronic prostatitis.Keywords: Achyranthes bidentata Blume., Chronic prostatitis, Inflammatory cel