1,068 research outputs found

    原特提斯的消減極性:西昆侖128公里巖體的啟示

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    The Yirba (128 km) pluton is an early Paleozoic dioritic intrusion of western Kunlun orogenic belt, northwest China as an important element when reconstructing the evolution history of this belt. Due to the scarcity of field data and methodological difference in studying this pluton, however, no consensus for its age, source and tectonic setting has been adopted. In this paper, we present new geochronological and geochemical data for the Yirba pluton, aiming to better understand its age, source, and hence the early Paleozoic tectonic evolutionary history of western Kunlun. U-Pb data by single grain zircon analyses suggest that the Yirba pluton was emplaced 471 ± 5 Ma ago and contains ca. 490 Ma zircon grains inherited from source, or captured in the magma chamber. The pluton is enriched in Al 2 O 3 (15.7% ∼ 18.4%), Sr (470 ∼ 864 μg/g) and other LILEs (large ion lithosphile elements), but relatively depleted in HFSE (high field strength elements and HREE), with LREE-enriched patterns and low to medium europium anomalies (δEu = ∼ 0.7), showing typical characteristics of I-type, volcanic arc granitoids. Although its relatively high Al 2 O 3, Sr and low MgO contents make it resemble adakite, its relatively high Yb (1.92 ∼ 2.88 μg/g), Y (19.4 ∼ 34.0 μg/g) contents, low Sr/Y (24.2 ∼ 37.0) , Zr/Sm (7.3 ∼ 21) and relatively high initial Sr isotope ratios (0.7075 ∼ 0.7091) do not support a subducting slab origin. Its Nd model ages (1.06 ∼ 1.35 Ga) indicate a juvenile source, while its O isotope compositions (+5.7‰ ∼ + 7.4‰) and Sr-O isotope relationship preclude significant involvement of sialic materials. The major, trace, REE and Nd-Sr-O isotope compositions strongly suggest that the Yirba pluton was formed by partial melting of mafic lower crust in a southward growing, active continental margin environment. The existence of volcanic arc granitoids in the south margin of the North Kunlun terrane suggests that the subduction polarity of the Proto-Tethys was northward.128公里巖體是西昆侖造山帶中一個早古生代的花崗閃長巖體,長期以來一直是研究西昆侖構造演化的重要參考依據。然而由于區域地質資料的不足和研究手段的不同,對該巖體的形成年代、源區性質以及構造背景等方面還存在著不同的認識。本文試圖通過地質年代學和地球化學方面的研究,明確128公里巖體的成巖時代和構造背景,進而制約西昆侖的早古生代構造演化。單顆粒鋯石的U-Pb定年結果表明128公里巖體形成于471±5 Ma并含有可能形成于早期巖漿房或繼承自源區的490 Ma左右的鋯石。128公里巖體富Al_2O_3(15.7%~18.4%),Sr(470~864μg/g)和大離子親石元素但相對虧損 高場強元素,相對富集輕稀土且具有低到中等的負銪異常(δEu=~0.7),顯示出典型的Ⅰ型弧花崗巖特征。盡管其富集Al_2O_3、Sr、相對低的MgO含量和Y/Yb比值使其非常類似于埃達克巖,但其相對高的Yb(1.92~2.88μg/g)、Y(19.4~34.0μg/g)含量,低的Sr/Y(24.2~37.0)和Zr/Sm(7.3~21)比值以及相對高的初始Sr同位素組成(0.7075~0.7091)排除了消減板塊在石榴石穩定區發生部分熔融的可能性。低的氧同位素组成( + 5.7%~7.4%) 以及Sr-O 同位素关系表明该岩体并非形成于地慢来源的岩泉与变质围岩间的同化混染。高的稀土含量、明显的稀土分馏以及相对高的Sr 同位素组成表明12 8 公里岩体不大可能形成于受陆源物质影响较小的大洋岛弧, 而更可能形成于活动大陆边缘环境中基性地壳物质的部分熔融。北昆仑地体的南缘存在火山弧型花岗岩的事实表明, 原特提斯的消减方向应当是向北的。published_or_final_versio

    Ethnic differences in susceptibilities to A(H1N1) flu: An epidemic parameter indicating a weak viral virulence

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    The current A(H1N1) flu has showed sub-population dependent susceptibility and fatality as early as April and May of 2009 in its first wave of spreading. After the pandemic outbreak spreads globally for more than seven months, the subpopulation dependence of this flu, including ethnicity, age and genderselectivity, has been recognized by several research groups. This paper attempts to discussed how to identify ethnic selectivity from the released data by WHO relevant to this ongoing flu, review some recently published papers describing the presence of ethnic differences in susceptibilities to the H1N1flu virus and further raised an argument that ethnic differences in  susceptibilities to a virus might be a piece of evidence reflecting a weak virulence of that specific virus

    Cloning and characterization of interferon stimulated genes Viperin and ISG15, and their promoters from snakehead Channa argus

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    By suppression subtractive hybridization, rapid amplification of cDNA ends and gene walking methods, interferon stimulated genes (ISGs), Viperin and ISG15, and their promoters have been cloned and characterized from snakehead Channa argus. The Viperin cDNA was found to be 1474 nt and contain an open reading frame (ORF) of 1059 nt that translates into a putative peptide of 352 amino acid (aa). The putative peptide of Viperin shows high identity to that in teleosts and mammals except for the N-terminal 70 aa. The ISG15 cDNA was found to be 758 nt and contain an ORF of 468 nt that translates into a putative peptide of 155 aa. The putative peptide of ISG15 is composed of two tandem repeats of ubiquitin-like (UBL) domains, and a canonical conjugation motif (LRGG) at C-terminal. Viperin and ISG15 promoter regions were characterized by the presence of interferon stimulating response elements (ISRE) and gamma-IFN activation sites (GAS). ISRE is a feature of IFN-induced gene promoter and partially overlaps interferon regulatory factor (IRF) 1 and IRF2 recognition sites. GAS is responsible for the gamma-IFN mediated transcription. One conserved site for NF-kappa B was found in the promoter region of Viperin. This is the first report of conservative binding motif for NF-kappa B in accordance with the consensus sequence (GGGRN-NYYCC) among teleost ISG promoters. Moreover, there were also TATA, CAAT and Sp1 transcription factor sites in Viperin and ISG15 promoters. In 5' untranslated region (UTR), snakehead ISG15 gene contains a single intron, which differs from Viperin gene. The transcripts of Vipeirn and ISG15 mRNA were mainly expressed in head kidney, posterior kidney, spleen and gill. The expression levels in liver were found to increase obviously in response to induction by IFN-inducer poly I : C.By suppression subtractive hybridization, rapid amplification of cDNA ends and gene walking methods, interferon stimulated genes (ISGs), Viperin and ISG15, and their promoters have been cloned and characterized from snakehead Channa argus. The Viperin cDNA was found to be 1474 nt and contain an open reading frame (ORF) of 1059 nt that translates into a putative peptide of 352 amino acid (aa). The putative peptide of Viperin shows high identity to that in teleosts and mammals except for the N-terminal 70 aa. The ISG15 cDNA was found to be 758 nt and contain an ORF of 468 nt that translates into a putative peptide of 155 aa. The putative peptide of ISG15 is composed of two tandem repeats of ubiquitin-like (UBL) domains, and a canonical conjugation motif (LRGG) at C-terminal. Viperin and ISG15 promoter regions were characterized by the presence of interferon stimulating response elements (ISRE) and gamma-IFN activation sites (GAS). ISRE is a feature of IFN-induced gene promoter and partially overlaps interferon regulatory factor (IRF) 1 and IRF2 recognition sites. GAS is responsible for the gamma-IFN mediated transcription. One conserved site for NF-kappa B was found in the promoter region of Viperin. This is the first report of conservative binding motif for NF-kappa B in accordance with the consensus sequence (GGGRN-NYYCC) among teleost ISG promoters. Moreover, there were also TATA, CAAT and Sp1 transcription factor sites in Viperin and ISG15 promoters. In 5' untranslated region (UTR), snakehead ISG15 gene contains a single intron, which differs from Viperin gene. The transcripts of Vipeirn and ISG15 mRNA were mainly expressed in head kidney, posterior kidney, spleen and gill. The expression levels in liver were found to increase obviously in response to induction by IFN-inducer poly I : C

    Using Neural Networks for Relation Extraction from Biomedical Literature

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    Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations is biomedical literature. Several relation extraction approaches have been proposed to identify relations between concepts in biomedical literature, namely, using neural networks algorithms. The use of multichannel architectures composed of multiple data representations, as in deep neural networks, is leading to state-of-the-art results. The right combination of data representations can eventually lead us to even higher evaluation scores in relation extraction tasks. Thus, biomedical ontologies play a fundamental role by providing semantic and ancestry information about an entity. The incorporation of biomedical ontologies has already been proved to enhance previous state-of-the-art results.Comment: Artificial Neural Networks book (Springer) - Chapter 1

    Contribution of human hematopoietic stem cells to liver repair

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    Immune-deficient mouse models of liver damage allow examination of human stem cell migration to sites of damage and subsequent contribution to repair and survival. In our studies, in the absence of a selective advantage, transplanted human stem cells from adult sources did not robustly become hepatocytes, although some level of fusion or hepatic differentiation was documented. However, injected stem cells did home to the injured liver tissue and release paracrine factors that hastened endogenous repair and enhanced survival. There were significantly higher levels of survival in mice with a toxic liver insult that had been transplanted with human stem cells but not in those transplanted with committed progenitors. Transplantation of autologous adult stem cells without conditioning is a relatively safe therapy. Adult stem cells are known to secrete bioactive factors that suppress the local immune system, inhibit fibrosis (scar formation) and apoptosis, enhance angiogenesis, and stimulate recruitment, retention, mitosis, and differentiation of tissue-residing stem cells. These paracrine effects are distinct from the direct differentiation of stem cells to repair tissue. In patients at high risk while waiting for a liver transplant, autologous stem cell therapy could be considered, as it could delay the decline in liver function

    Intraoperative device closure of perimembranous ventricular septal defects in the young children under transthoracic echocardiographic guidance; initial experience

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    <p>Abstract</p> <p>Objectives</p> <p>This study aimed to assess the safety and feasibility of intraoperative device closure of perimembranous ventricular septal defects (VSD) in young children guided by transthoracic echocardiography (TTE).</p> <p>Methods</p> <p>We enrolled 18 patients from our hospital to participate in the study from June 2011 to September 2011. A minimal inferior median incision was performed after full evaluation of the perimembranous VSD by real-time TTE, and a domestically made device was inserted to occlude the perimembranous VSD. The proper size of the device was determined by means of transthoracic echocardiographic analysis.</p> <p>Results</p> <p>Implantation was ultimately successful in 16 patients using TTE guidance. In these cases, the complete closure rate immediately following the operation and on subsequent follow-up was 100%. Symmetric devices were used in 14 patients, and asymmetric devices were used in two patients. Two patient were transformed to surgical treatment, one for significant residual shunting, and the other for unsuccessful wire penetration of the VSD. The follow-up periods were less than nine months, and only one patient had mild aortic regurgitation. There were no instances of residual shunt, noticeable aortic regurgitation, significant arrhythmia, thrombosis, or device failure.</p> <p>Conclusions</p> <p>Minimally invasive transthoracic device closure of perimembranous VSDs is safe and feasible, using a domestically made device under transthoracic echocardiographic guidance, without the need for cardiopulmonary bypass. This technique should be considered an acceptable alternative to surgery or device closure guided by transesophageal echocardiography in selected young children. However, a long-term evaluation of outcomes is necessary.</p

    Searching ChIP-seq genomic islands for combinatorial regulatory codes in mouse embryonic stem cells

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    <p>Abstract</p> <p>Background</p> <p>To facilitate deciphering underlying transcriptional regulatory circuits in mouse embryonic stem (ES) cells, recent ChIP-seq data provided genome-wide binding locations of several key transcription factors (TFs); meanwhile, existing efforts profiled gene expression in ES cells and in their early differentiated state. It has been shown that the gene expression profiles are correlated with the binding of these TFs. However, it remains unclear whether other TFs, referred to as cofactors, participate the gene regulation by collaborating with the ChIP-seq TFs.</p> <p>Results</p> <p>Based on our analyses of the ES gene expression profiles and binding sites of potential cofactors in vicinity of the ChIP-seq TF binding locations, we identified a list of co-binding features that show significantly different characteristics between different gene expression patterns (activated or repressed gene expression in ES cells) at a false discovery rate of 10%. Gene classification with a subset of the identified features achieved up to 20% improvement over classification only based on the ChIP-seq TFs. More than 1/3 of reasoned regulatory roles of cofactor candidates involved in these features are supported by existing literatures. Finally, the predicted target genes of the majority candidates present expected expression change in another independent data set, which serves as a supplementary validation of these candidates.</p> <p>Conclusions</p> <p>Our results revealed a list of combinatorial genomic features that are significantly associated with gene expression in ES cells, suggesting potential cofactors of the ChIP-seq TFs for gene regulation.</p
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