15 research outputs found

    Relative abundance of fungal microbiota in lower respiratory tract samples.

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    <p>Healthy adults (bar group 1a), patients with healthy respiratory tract but with antibiotic therapy for extrapulmonary infection (bar group 1b), non-neutropenic intubated and mechanically ventilated ICU patients without antibiotic therapy (bar group 2a), non-neutropenic intubated and mechanically ventilated ICU patients with antibiotic therapy for extrapulmonary infection (bar group 2b), and patients with antibiotic therapy due to pneumonia (bar group 3b). Fungi are shown at genus level. Yellow bars represent the sum of <i>Candida</i> sequences across all samples per group related to the total number of detected fungal sequences within each of the groups. By conventional culture <i>Candida spp</i>. were detected in 0/8 (group 1a), 0/7 (group 1b), 1/7 (group 2a), 3/6 (group 2b), and 11/26 (group 3b) patients. No other fungi were cultured.</p

    Relative abundance of bacterial microbiota in consecutively sampled patients.

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    <p>Consecutive lower respiratory tract samples of 4 intubated and mechanically ventilated patients with pneumonia. Bacteria are shown at genus level. Unclassified sequences in sample 304-3B-ASP-0 revealed <i>Escherichia/Shigella sp</i>. using a confidence threshold of 0.63. Comparison of these sequences with reference sequences using BLAST yielded uncultured <i>Shigella sp</i>. 16s rRNA genes. Unclassified sequences in sample 313-3B-VAP-0 revealed <i>Enterobacter sp</i>. using a confidence threshold of 0.63. Comparison of these sequences with reference sequences using BLAST yielded uncultured proteobacterium 16s rRNA genes. VAP = Ventilator associated pneumonia, ASP = aspiration pneumonia, NAP = nosocomial acquired pneumonia.</p
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