Correspondence of butterfly and host plant diversity: Foundation for habitat restoration and conservation

At a spatial scale, the diversity of butterflies varies with numerous factors including the availability of the host plant species. In parity with this proposition, the correspondence of diversity of butterfly and plant in the background of the urban–rural gradient was evaluated using Kolkata, India, as a model study area. The results reveal significant positive correlation between the diversity of butterflies and the plants, with the different values for the suburban, rural, and urban areas. Identification of the butterfly loads for the plants in the respective areas can be useful in enhancing the conservation of the butterflies through enhanced plantation of the concerned plant species. Alternatively, the disclosure of the generalist and specialist pattern of the plant species preference by the butterflies may be useful in enhancing the population of the respective species in the concerned areas. The conservation strategy for butterfly species may be refined through the use of both or any one of the quantitative assessment of the butterfly–plant links in the urban–rural gradient in Kolkata, India, and similar places in the world

Reversible Logic Circuit Synthesis

Reversible or information-lossless circuits have applications in digital signal processing, communication, computer graphics and cryptography. They are also a fundamental requirement in the emerging field of quantum computation. We investigate the synthesis of reversible circuits that employ a minimum number of gates and contain no redundant input-output line-pairs (temporary storage channels). We prove constructively that every even permutation can be implemented without temporary storage using NOT, CNOT and TOFFOLI gates. We describe an algorithm for the synthesis of optimal circuits and study the reversible functions on three wires, reporting distributions of circuit sizes. We study circuit decompositions of reversible circuits where gates of the same type are next to each other. Finally, in an application important to quantum computing, we synthesize oracle circuits for Grover's search algorithm, and show a significant improvement over a previously proposed synthesis algorithm.Comment: 30 pages, 14 figs+tables. To appear in IEEE Transactions on Computer-Aided Design of Electronic Circuits. Contains results presented at the Intl. Conf. on Computer-Aided Design, 2002 and new material on decompositions of reversible circuits where gates of the same type are next to each othe

Prediction of residual stresses in roller burnished components : a finite element approach

Surface finish is an important factor in creating the durable metal components, and fatigue strength can be improved if compressive residual stresses are produced in the surface. Burnishing is a finishing process and compressive residual stresses are induced during the process. The present study of minimizing the surface roughness based on the experimental work, and finite element model was developed to evaluate the analytical results. Commercial purity Mild Steel and Aluminium were selected as work specimens and a high carbon high chromium roller was used as a tool for the burnishing process.<br /

Public transport: a large scale fomite of methicillin-resistant Staphylococcus aureus

Background: The role of public transport as reservoirs of antibiotic-resistant staphylococci was determined.Methods: 200 swabs were collected from 50 public buses (urban and rural) circulating in Davangere, Karnataka. Swabs collected were inoculated on Blood agar, Mannitol salt agar and MacConkey agar plates. After incubation for 24-48 hours, plates were examined for the growth of Staphylococcus aureus. Anti-microbial susceptibility test was performed using oxacillin 1ug disc to detect methicillin resistance as per CSLI guidelines.Results: Out of 40 Staphylococcus aureus isolated 35 isolates were resistant to more than two classes of antibiotics, hence multidrug resistant Staphylococcus aureus. Out of 35 MDR isolates, 18 were resistant to oxacillin and cefoxitin. Minimum inhibitory concentration test revealed that out of 35 MDR isolates, 18 isolates had MIC value of ≥ 4µg/ml.Conclusions: The recovery methicillin-resistant Staphylococcus aureus from public transport system implies a potential risk for transmission of these bacteria in community

Analysis and Prediction of Patient Survival After Radiotherapy For Liver Cancer Based On Volumetric Segmental Response and Clinically Relevant Factors

https://openworks.mdanderson.org/sumexp23/1121/thumbnail.jp

Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells

Peste des petits ruminanats virus (PPRV), a morbillivirus causes an acute, highly contagious disease – peste des petits ruminants (PPR), affecting goats and sheep. Sungri/96 vaccine strain is widely used for mass vaccination programs in India against PPR and is considered the most potent vaccine providing long-term immunity. However, occurrence of outbreaks due to emerging PPR viruses may be a challenge. In this study, the temporal dynamics of immune response in goat peripheral blood mononuclear cells (PBMCs) infected with Sungri/96 vaccine virus was investigated by transcriptome analysis. Infected goat PBMCs at 48 h and 120 h post infection revealed 2540 and 2000 differentially expressed genes (DEGs), respectively, on comparison with respective controls. Comparison of the infected samples revealed 1416 DEGs to be altered across time points. Functional analysis of DEGs reflected enrichment of TLR signaling pathways, innate immune response, inflammatory response, positive regulation of signal transduction and cytokine production. The upregulation of innate immune genes during early phase (between 2-5 days) viz. interferon regulatory factors (IRFs), tripartite motifs (TRIM) and several interferon stimulated genes (ISGs) in infected PBMCs and interactome analysis indicated induction of broad-spectrum anti-viral state. Several Transcription factors – IRF3, FOXO3 and SP1 that govern immune regulatory pathways were identified to co-regulate the DEGs. The results from this study, highlighted the involvement of both innate and adaptive immune systems with the enrichment of complement cascade observed at 120 h p.i., suggestive of a link between innate and adaptive immune response. Based on the transcriptome analysis and qRT-PCR validation, an in vitro mechanism for the induction of ISGs by IRFs in an interferon independent manner to trigger a robust immune response was predicted in PPRV infection

Prescription practices and availability of artemisinin monotherapy in India: where do we stand?

<p>Abstract</p> <p>Background</p> <p>The World Health Organization has urged all member states to deploy artemisinin-based combination therapy and progressively withdraw oral artemisinin monotherapies from the market due to their high recrudescence rates and to reduce the risk of drug resistance. Prescription practices by physicians and the availability of oral artemisinin monotherapies with pharmacists directly affect the pattern of their use. Thus, treatment practices for malaria, with special reference to artemisinin monotherapy prescription, in selected states of India were evaluated.</p> <p>Methods</p> <p>Structured, tested questionnaires were used to conduct convenience surveys of physicians and pharmacists in eleven purposively selected districts across six states in 2008. In addition, exit interviews of patients with a diagnosis of uncomplicated malaria or a prescription for an anti-malarial drug were also performed. Logistic regression was used to determine patient clinical care, and institutional factors associated with artemisinin monotherapy prescription.</p> <p>Results</p> <p>Five hundred and eleven physicians from 196 health facilities, 530 pharmacists, and 1, 832 patients were interviewed. Artemisinin monotherapy was available in 72.6% of pharmacies and was prescribed by physicians for uncomplicated malaria in all study states. Exit interviews among patients confirmed the high rate of use of artemisinin monotherapy with 14.8% receiving such a prescription. Case management, i.e. method of diagnosis and overall treatment, varied by state and public or private sector. Treatment in the private sector (OR 8.0, 95%CI: 3.8, 17) was the strongest predictor of artemisinin monotherapy prescription when accounting for other factors. Use of the combination therapy recommended by the national drug policy, artesunate + sulphadoxine-pyrimethamine, was minimal (4.9%), with the exception of one state.</p> <p>Conclusions</p> <p>Artemisinin monotherapy use was widespread across India in 2008. The accessible sale of oral artemisinin monotherapy in retail market and an inadequate supply of recommended drugs in the public sector health facilities promoted its prescription. This study resulted in notifications to all state drug controllers in India to withdraw the oral artemisinin formulations from the market. In 2010, artesunate + sulphadoxine-pyrimethamine became the universal first-line treatment for confirmed <it>Plasmodium falciparum </it>malaria and was deployed at full scale.</p

Evaluation and comparison of the constitutive expression levels of Toll-like receptors 2, 3 and 7 in the peripheral blood mononuclear cells of Tharparkar and crossbred cattle

Aim: This study was undertaken to assess the differential expression levels of toll-like receptors (TLRs) 2, 3 and 7 in peripheral blood mononuclear cells (PBMCs) isolated from Tharparkar and Crossbred cattle belonging to different regions of India. Materials and Methods: PBMCs were isolated from blood samples of Tharparkar cattle from Indian Veterinary Research Institute (IVRI) farm (n=30); Suratgarh farm (n=61); Jaipur farm (n=8) and cross breed cattle from Jaipur (n=47). RNA was isolated from PBMCs and cDNA was synthesized using random hexamers. The expression profiles of TLR 2, 3 and 7 were estimated by real-time PCR and normalized to the expression of β-actin. Results: PBMCs of Tharparkar cattle from Suratgarh, exhibited a significantly higher (p<0.05) constitutive expression levels of TLR2, TLR3 and TLR7 genes as compared to Tharparkar cattle from IVRI or Jaipur as well as the crossbred cattle from Jaipur. PBMCs of crossbred cattle from Jaipur showed higher expression profiles of all the TLRs than Tharparkar cattle from Jaipur and IVRI. Conclusion: Our study indicates, expression levels of TLR2, TLR3 and TLR7 are significantly higher for Tharparkar cattle from Suratgarh than the cattle from Jaipur and IVRI and crossbred cattle from Jaipur. However, crossbred cattle from Jaipur showed higher basal expression levels of all the three TLRs than Tharparkar cattle from Jaipur and IVRI. Results also indicate that PBMCs of Tharparkar cattle show a regional variation in the expression pattern of TLRs

Common variants in CLDN2 and MORC4 genes confer disease susceptibility in patients with chronic pancreatitis

A recent Genome-wide Association Study (GWAS) identified association with variants in X-linked CLDN2 and MORC4 and PRSS1-PRSS2 loci with Chronic Pancreatitis (CP) in North American patients of European ancestry. We selected 9 variants from the reported GWAS and replicated the association with CP in Indian patients by genotyping 1807 unrelated Indians of Indo-European ethnicity, including 519 patients with CP and 1288 controls. The etiology of CP was idiopathic in 83.62% and alcoholic in 16.38% of 519 patients. Our study confirmed a significant association of 2 variants in CLDN2 gene (rs4409525—OR 1.71, P = 1.38 x 10-09; rs12008279—OR 1.56, P = 1.53 x 10-04) and 2 variants in MORC4 gene (rs12688220—OR 1.72, P = 9.20 x 10-09; rs6622126—OR 1.75, P = 4.04x10-05) in Indian patients with CP. We also found significant association at PRSS1-PRSS2 locus (OR 0.60; P = 9.92 x 10-06) and SAMD12-TNFRSF11B (OR 0.49, 95% CI [0.31–0.78], P = 0.0027). A variant in the gene MORC4 (rs12688220) showed significant interaction with alcohol (OR for homozygous and heterozygous risk allele -14.62 and 1.51 respectively, P = 0.0068) suggesting gene-environment interaction. A combined analysis of the genes CLDN2 and MORC4 based on an effective risk allele score revealed a higher percentage of individuals homozygous for the risk allele in CP cases with 5.09 fold enhanced risk in individuals with 7 or more effective risk alleles compared with individuals with 3 or less risk alleles (P = 1.88 x 10-14). Genetic variants in CLDN2 and MORC4 genes were associated with CP in Indian patients