Geochemical compositional controls on DNA strand breaks induced in in vitro cell-free assays by crushed rock powders from the Panasqueira mine area, Portugal

From Springer Nature via Jisc Publications RouterHistory: received 2019-12-15, accepted 2020-06-24, registration 2020-06-24, pub-electronic 2020-07-09, online 2020-07-09, pub-print 2021-07Publication status: PublishedFunder: Saudi Arabia Cultural Bureau in London; doi: http://dx.doi.org/10.13039/100012363Abstract: DNA strand breaks are a common form of DNA damage that can contribute to chromosomal instability or gene mutations. Such strand breaks may be caused by exposure to heavy metals. The aim of this study was to assess the level of DNA strand breaks caused by µm-scale solid particles of known chemical composition with elevated heavy metals/metalloids, notably arsenic, using an in vitro cell-free DNA plasmid scission assay. These samples were incubated with and without H2O2 to see whether damage occurs directly or indirectly through the Fenton reaction. Levels of DNA damage in the absence of H2O2 were < 10%, but in the presence of H2O2, all samples showed higher levels of damage ranging from 10 to 100% suggesting that damage was being incurred through the Fenton reaction. Using bivariate correlation analysis and multiple linear regression, manganese oxide (MnO), sulphur (S), copper (Cu), and zinc (Zn) concentrations in the particulates were found to be the most significant predictors of DNA damage. The mechanism of this DNA damage formation has yet to be thoroughly investigated but is hypothesised to be due to reactive oxygen species formation. Further work is required to assess the extent of contribution of reactive oxygen species to this DNA damage, but this study highlights the potential role of chemistry and/or mineralogy to the extent and/or nature of DNA damage caused by particulates

Geostationary aerosol retrievals of extreme biomass burning plumes during the 2019–2020 Australian bushfires

Extreme biomass burning (BB) events, such as those seen during the 2019-2020 Australian bushfire season, are becoming more frequent and intense with climate change. Ground-based observations of these events can provide useful information on the macro-and micro-physical properties of the plumes, but these observations are sparse, especially in regions which are at risk of intense bushfire events. Satellite observations of extreme BB events provide a unique perspective, with the newest generation of geostationary imagers, such as the Advanced Himawari Imager (AHI), observing entire continents at moderate spatial and high temporal resolution. However, current passive satellite retrieval methods struggle to capture the high values of aerosol optical thickness (AOT) seen during these BB events. Accurate retrievals are necessary for global and regional studies of shortwave radiation, air quality modelling and numerical weather prediction. To address these issues, the Optimal Retrieval of Aerosol and Cloud (ORAC) algorithm has used AHI data to measure extreme BB plumes from the 2019-2020 Australian bushfire season. The sensitivity of the retrieval to the assumed optical properties of BB plumes is explored by comparing retrieved AOT with AErosol RObotic NETwork (AERONET) level-1.5 data over the AERONET site at Tumbarumba, New South Wales, between 1 December 2019 at 00:00UTC and 3 January 2020 at 00:00UTC. The study shows that for AOT values >2, the sensitivity to the assumed optical properties is substantial. The ORAC retrievals and AERONET data are compared against the Japan Aerospace Exploration Agency (JAXA) Aerosol Retrieval Product (ARP), Moderate Resolution Imaging Spectroradiometer (MODIS) Deep Blue over land, MODIS MAIAC, Sentinel-3 SYN and VIIRS Deep Blue products. The comparison shows the ORAC retrieval significantly improves coverage of optically thick plumes relative to the JAXA ARP, with approximately twice as many pixels retrieved and peak retrieved AOT values 1.4 times higher than the JAXA ARP. The ORAC retrievals have accuracy scores of 0.742-0.744 compared to the values of 0.718-0.833 for the polar-orbiting satellite products, despite successfully retrieving approximately 28 times as many pixels over the study period as the most successful polar-orbiting satellite product. The AHI and MODIS satellite products are compared for three case studies covering a range of BB plumes over Australia. The results show good agreement between all products for plumes with AOT values ≤2. For extreme BB plumes, the ORAC retrieval finds values of AOT >15, significantly higher than those seen in events classified as extreme by previous studies, although with high uncertainty. A combination of hard limits in the retrieval algorithms and misclassification of BB plumes as cloud prevents the JAXA and MODIS products from returning AOT values significantly greater than 5

Engineering of Chinese hamster ovary cell lipid metabolism results in an expanded ER and enhanced recombinant biotherapeutic protein production

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Data for engineering lipid metabolism of Chinese hamster ovary (CHO) cells for enhanced recombinant protein production

The data presented in this article relates to the manuscript entitled ‘Engineering of Chinese hamster ovary cell lipid metabolism results in an expanded ER and enhanced recombinant biotherapeutic protein production’, published in the Journal Metabolic Engineering [1]. In the article here, we present data examining the overexpression of the lipid metabolism modifying genes SCD1 and SREBF1 in CHO cells by densitometry of western blots and by using mass spectrometry to investigate the impact on specific lipid species. We also present immunofluorescence data at the protein level upon SCD1 and SREBF1 overexpression. The growth profile data during batch culture of control CHO cells and CHO cells engineered to overexpress SCD1 and SREBF1 during batch culture are also reported. Finally, we report data on the yields of model secretory recombinant proteins produced from control, SCD1 or SREBF1 engineered cells using a transient expression systems

Atypical scrapie in sheep from a UK research flock which is free from classical scrapie

Background: In the wake of the epidemic of bovine spongiform encephalopathy the British government established a flock of sheep from which scrapie-free animals are supplied to laboratories for research. Three breeds of sheep carrying a variety of different genotypes associated with scrapie susceptibility/resistance were imported in 1998 and 2001 from New Zealand, a country regarded as free from scrapie. They are kept in a purpose-built Sheep Unit under strict disease security and are monitored clinically and post mortem for evidence of scrapie. It is emphasised that atypical scrapie, as distinct from classical scrapie, has been recognised only relatively recently and differs from classical scrapie in its clinical, neuropathological and biochemical features. Most cases are detected in apparently healthy sheep by post mortem examination.Results: The occurrence of atypical scrapie in three sheep in (or derived from) the Sheep Unit is reported. Significant features of the affected sheep included their relatively high ages (6 y 1 mo, 7 y 9 mo, 9 y 7 mo respectively), their breed (all Cheviots) and their similar PRNP genotypes (AFRQ/AFRQ, AFRQ/ALRQ, and AFRQ/AFRQ, respectively). Two of the three sheep showed no clinical signs prior to death but all were confirmed as having atypical scrapie by immunohistochemistry and Western immunoblotting. Results of epidemiological investigations are presented and possible aetiologies of the cases are discussed.Conclusion: By process of exclusion, a likely explanation for the three cases of atypical scrapie is that they arose spontaneously and were not infected from an exterior source. If correct, this raises challenging issues for countries which are currently regarded as free from scrapie. It would mean that atypical scrapie is liable to occur in flocks worldwide, especially in older sheep of susceptible genotypes. To state confidently that both the classical and atypical forms of scrapie are absent from a population it is necessary for active surveillance to have taken place