Results of four years of digital urban monitoring of Rattus norvegicus with RatMap in Hamburg including data on infestation near the surface and in underground sewers

Plenge-Bönig, A., Zickert, A., Baumgardt, K., Sammann, A

Distribution and consequences of VKORC1 polymorphisms in Germany

Runge, M., Von Keyserlingk, M., Braune, S., Freise, J., Eiler, T., Plenge-Bönig, A., Becker, D., Pelz, H.-J., Esther, A., Rost, S., Müller, C.R

Novel Hepatitis E Virus Genotype in Norway Rats, Germany

Human hepatitis E virus infections may be caused by zoonotic transmission of virus genotypes 3 and 4. To determine whether rodents are a reservoir, we analyzed the complete nucleotide sequence of a hepatitis E–like virus from 2 Norway rats in Germany. The sequence suggests a separate genotype for this hepatotropic virus

A SARS-CoV-2 Omicron outbreak among crew members on a cruise ship in Germany in early 2022

Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreaks on cruise shipshave rarely been investigated. In early 2022, we were informed about a SARS-CoV-2 outbreak on a cruiseship calling Port of Hamburg after 10 infections among crew members were detected. We conducted anoutbreak investigation in collaboration between ship owners, the ship physician and Hamburg’s Institutefor Hygiene and Environment, to identify risk factors and to achieve containment. The aim was to identifyrisk factors for SARS-CoV-2 infection and SARS-CoV-2 variants in a cohort of 165 crew members.Materials and methods: For this purpose, we collected data on age, sex, nationality, boarding-time, cabin use(single/shared), work place, and vaccination status of the study participants. Cases were defined as individualswho tested SARS-CoV-2 positive at least once in daily screenings during the outbreak period (10 days)by polymerase chain reaction or antigen test. We investigated risk factors for infection by descriptive, univariableand multivariable analysis. We performed whole genome sequencing to identify SARS-CoV-2 variants.Results: We verified 103 SARS-CoV-2 positive cases (attack rate [AR] 62.4%); 39/41 sequenced sampleswere BA.2.3 Omicron subtype, one BA.1 and one BA.1.1. Among boostered crew members, AR was 38%vs. 65% among those vaccinated once or twice. Among those who stayed < 30 days on board, AR was31% vs. 72% among those staying on board longer. Among Europeans, the AR was 53% vs. 71% in non--Europeans. Adjusting for age and sex, cases were more likely to have received no booster vaccine (oddsratio [OR]: 2.66, 95% confidence interval [CI]: 0.99–7.13), to have spent more time on board (≥ 30 days,OR: 6.36, 95% CI: 2.81–14.40 vs. < 30 days) and to have a non-European nationality (OR: 2.14, 95% CI:1.08–4.27). The outbreak stopped shortly after offboard isolation of cases.Conclusions: This investigation confirms the importance of a booster vaccine against COVID-19. Longerstays onboard could facilitate social mixing. Further studies could investigate the impact of social, cultural/behavioural patterns and public health access on the infection risk. Physical distancing together withscreening and isolation can contain SARS-CoV-2 outbreaks on cruise ships

Health care-associated rotavirus illness in pediatric inpatients in Germany, Austria, and Switzerland

A longitudinal study of health care-associated transmission of rotaviruses (RVs) in pediatric inpatients 0-48 months old in Austria, Germany, and Switzerland showed that almost one third of all cases occurred in patients 2 months old or younger. The effectiveness of vaccination against RV from 2 months of age onward remains to be evaluated

Desperately seeking diarrhoea: outbreak of haemolytic uraemic syndrome caused by emerging sorbitol-fermenting shiga toxin-producing Escherichia coli O157:H-, Germany, 2009

Infection with sorbitol-fermenting Shiga toxin-producing Escherichia coli O157:H- (sf STEC O157:H-) is rare, but emerging in Europe. The pathogen is typically isolated from paediatric patients with life-threatening haemolytic uraemic syndrome (HUS). It is unclear whether this observation primarily reflects the pathogen's virulence or its complex laboratory diagnosis, not routinely conducted in diarrhoeal patients. In summer 2009, four boys living in the same suburb in Germany developed diarrhoea-associated HUS: three were infected by sf STEC O157:H- and one died. We conducted two analytical epidemiological studies, an extensive search for diarrhoeal cases in potentially exposed groups, and an environmental investigation. Outbreak cases were residents of the suburb diagnosed with HUS, sf STEC O157:H- infection, or both between 24 July 2009 and 25 August 2009. Overall, we ascertained eight cases with a median age of 4 years (range: from 8 months to 9 years). Stool screening of 220 persons led to the identification of only four additional cases: two asymptomatic carriers and two diarrhoeal cases. HUS was strongly associated with visiting a local playground in July, particularly on 16th July (odds ratio = 42.7, P = 0.002). No other commonality, including food, was identified, and all environmental samples (n = 24) were negative. In this localized non-foodborne outbreak, the place of likely infection was a local playground. Sf STEC O157:H- infection apparently limits itself rarely to diarrhoeal illness and progresses frequently to HUS. Therefore, detection of and response to this hypervirulent pathogen primarily relies on HUS surveillance

A novel hepatitis E virus-like agent in wild Norway rats (Rattus norvegicus) from Germany

Ulrich, R.G., Plenge-Bönig, A., Schielke, A., Kindler, E., Dremsek, P., Gregersen, H., Rietschel, W., Groschup, M.H., Reetz, J., Guenther, S., Heckel, G., Johne, R