Assessment of the variation in nutritional composition and safety of dried recovered food from United States households and prospects for use in chicken feed

IntroductionNew poultry feed valorization pathways for recovered household food could be enabled by commercially available household devices that dry uneaten food material, arrest spoilage, and preserve nutrient content. However, the nutrient composition, safety, and feed incorporation potential of dried recovered household food (DRHF) is presently unknown.MethodsThirty-eight households spanning 31 states participated in a 4-to-6-week survey to generate and collect food residues that were dried using an in-home device. The DRHF samples were evaluated for chemical composition, digestibility of energy and amino acids, and safety to determine their potential for inclusion in chicken feed.Results and discussionThe DRHF had average levels of 15.9% crude protein, 13.3% crude fat, and 22.6% neutral detergent fiber, and 3.18 kcal/g of nitrogen-adjusted true metabolizable energy (by dry weight). The Windows User-Friendly Feed Formulation 2.1 modeler was used to perform linear programming and develop chicken feed rations for broilers and layers that incorporated DRHF alongside conventional feed ingredients, including corn, soybean meal, dicalcium phosphate, limestone, synthetic amino acids, salt, vitamin premix, and mineral premix. The feed formulation results showed that, on average, DRHF incorporation rates of up to 33 and 37% (by weight) are predicted to avoid any nutrient deficiencies or electrolyte imbalances in the broiler and layer rations, respectively. In the broiler ration, DRHF displaced corn, soybean meal, and limestone to varying degrees, while corn, soybean meal, animal fat, dicalcium phosphate, and limestone were substantially displaced in the layer rations. Addition of vitamin premix was predicted as necessary to facilitate DRHF inclusion in the layer rations. Furthermore, foodborne pathogens, mycotoxins, and heavy metals were either absent or below United States regulatory threshold levels. Measured levels of biogenic amines and fat/oil oxidation were consistent with prior research showing compatibility with chickens. These results can inform future in vivo feeding trials to validate the use of DRHF with varying properties in poultry feed

Pathways for avian influenza virus spread: GPS reveals wild waterfowl in commercial livestock facilities and connectivity with the natural wetland landscape

Zoonotic diseases are of considerable concern to the human population and viruses such as avian influenza (AIV) threaten food security, wildlife conservation and human health. Wild waterfowl and the natural wetlands they use are known AIV reservoirs, with birds capable of virus transmission to domestic poultry populations. While infection risk models have linked migration routes and AIV outbreaks, there is a limited understanding of wild waterfowl presence on commercial livestock facilities, and movement patterns linked to natural wetlands. We documented 11 wild waterfowl (three Anatidae species) in or near eight commercial livestock facilities in Washington and California with GPS telemetry data. Wild ducks used dairy and beef cattle feed lots and facility retention ponds during both day and night suggesting use for roosting and foraging. Two individuals (single locations) were observed inside poultry facility boundaries while using nearby wetlands. Ducks demonstrated high site fidelity, returning to the same areas of habitats (at livestock facilities and nearby wetlands), across months or years, showed strong connectivity with surrounding wetlands, and arrived from wetlands up to 1251 km away in the week prior. Telemetry data provides substantial advantages over observational data, allowing assessment of individual movement behaviour and wetland connectivity that has significant implications for outbreak management. Telemetry improves our understanding of risk factors for waterfowl–livestock virus transmission and helps identify factors associated with coincident space use at the wild waterfowl–domestic livestock interface. Our research suggests that even relatively small or isolated natural and artificial water or food sources in/near facilities increases the likelihood of attracting waterfowl, which has important consequences for managers attempting to minimize or prevent AIV outbreaks. Use and interpretation of telemetry data, especially in near-real-time, could provide key information for reducing virus transmission risk between waterfowl and livestock, improving protective barriers between wild and domestic species, and abating outbreaks

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Gastrointestinal impactions in backyard poultry.

In contrast to conventional commercial poultry, which are raised primarily in controlled indoor environments, backyard poultry are typically raised in less restricted settings, potentially exposing them to a greater variety of ingestible substances, including multiple types of forage. Consequently, problems such as gastrointestinal impactions caused by ingesta have been noted in backyard poultry. To determine the prevalence of these impactions in backyard poultry, we performed a retrospective database search for autopsy submissions to the California Animal Health and Food Safety laboratory system and found that gastrointestinal impaction was associated with the death of 42 backyard poultry cases (40 chickens, 1 turkey, and 1 goose) from January 2013 to July 2018. In 32 of these 42 (76%) cases, the impaction was caused by fibrous plant material, 7 (17%) by compacted feed, and 3 (7%) by miscellaneous ingesta (tortilla, plastic, and wood shavings). The large proportion of grass impactions indicate that foraging is the predominant source of impaction material in backyard poultry, and that long grasses may be a significant health hazard for poultry. Backyard, pasture-raised, and free-range poultry producers are advised to maintain short pastures, avoid feeds that may expand in the gastrointestinal tract, and provide adequate grit to prevent impactions

Health surveillance of a potential bridge host: Pathogen exposure risks posed to avian populations augmented with captive‐bred pheasants

Augmentation of wild populations with captive-bred individuals presents an inherent risk of co-introducing novel pathogens to naïve species, but it can be an important tool for supplementing small or declining populations. Game species used for human enterprise and recreation such as the ring-necked pheasant (Phasianus colchicus) are commonly raised in captivity and released onto public and private wildlands as a method of augmenting naturalized pheasant populations. This study presents findings on pathogen exposure from three sources of serological data collected in California during 2014-2017 including (a) 71 pen-reared pheasants sampled across seven game bird breeding farms, (b) six previously released pen-reared pheasants captured at two study sites where wild pheasants occurred and (c) 79 wild pheasants captured across six study sites. In both pen-reared and wild pheasants, antibodies were detected against haemorrhagic enteritis virus (HEV), infectious laryngotracheitis (ILT), infectious bursal disease virus (IBDV), paramyxovirus type 1 (PMV-1) and Pasteurella multocida (PM). Previously released pen-reared pheasants were seropositive for HEV, ILT, and PM. Generalized linear mixed models accounting for intraclass correlation within groups indicated that pen-reared pheasants were more than twice as likely to test positive for HEV antibodies. Necropsy and ancillary diagnostics were performed in addition to serological testing on 40 pen-reared pheasants sampled from five of the seven farms. Pheasants from three of these farms tested positive by PCR for Siadenovirus, the causative agent of both haemorrhagic enteritis in turkeys and marble spleen disease of pheasants, which are serologically indistinguishable. Following necropsy, owners from the five farms were surveyed regarding husbandry and biosecurity practices. Farms ranged in size from 10,000 to more than 100,000 birds, two farms raised other game bird species on premises, and two farms used some form of vaccination. Biosecurity practices varied by farm, but the largest farm implemented the strictest practices

Bioaerosol Mass Spectrometry for Rapid Detection of Individual Airborne Mycobacterium tuberculosis H37Ra Particles

Single-particle laser desorption/ionization time-of-flight mass spectrometry, in the form of bioaerosol mass spectrometry (BAMS), was evaluated as a rapid detector for individual airborne, micron-sized, Mycobacterium tuberculosis H37Ra particles, comprised of a single cell or a small number of clumped cells. The BAMS mass spectral signatures for aerosolized M. tuberculosis H37Ra particles were found to be distinct from M. smegmatis, Bacillus atrophaeus, and B. cereus particles, using a distinct biomarker. This is the first time a potentially unique biomarker was measured in M. tuberculosis H37Ra on a single-cell level. In addition, M. tuberculosis H37Ra and M. smegmatis were aerosolized into a bioaerosol chamber and were sampled and analyzed using BAMS, an aerodynamic particle sizer, a viable Anderson six-stage sampler, and filter cassette samplers that permitted direct counts of cells. In a background-free environment, BAMS was able to sample and detect M. tuberculosis H37Ra at airborne concentrations of >1 M. tuberculosis H37Ra-containing particles/liter of air in 20 min as determined by direct counts of filter cassette-sampled particles, and concentrations of >40 M. tuberculosis H37Ra CFU/liter of air in 1 min as determined by using viable Andersen six-stage samplers. This is a first step toward the development of a rapid, stand-alone airborne M. tuberculosis particle detector for the direct detection of M. tuberculosis bioaerosols generated by an infectious patient. Additional instrumental development is currently under way to make BAMS useful in realistic environmental and respiratory particle backgrounds expected in tuberculosis diagnostic scenarios

A comparison of amplification methods to detect Avian Influenza viruses in California wetlands targeted via remote sensing of waterfowl.

Migratory waterfowl, including geese and ducks, are indicated as the primary reservoir of avian influenza viruses (AIv) which can be subsequently spread to commercial poultry. The US Department of Agriculture's (USDA) surveillance efforts of waterfowl for AIv have been largely discontinued in the contiguous United States. Consequently, the use of technologies to identify areas of high waterfowl density and detect the presence of AIv in habitat such as wetlands has become imperative. Here we identified two high waterfowl density areas in California using processed NEXt generation RADar (NEXRAD) and collected water samples to test the efficacy of two tangential flow ultrafiltration methods and two nucleic acid based AIv detection assays. Whole-segment amplification and long-read sequencing yielded more positive samples than standard M-segment qPCR methods (57.6% versus 3.0%, p < .0001). We determined that this difference in positivity was due to mismatches in published primers to our samples and that these mismatches would result in failing to detect in the vast majority of currently sequenced AIv genomes in public databases. The whole segment sequences were subsequently used to provide subtype and potential host information of the AIv environmental reservoir. There was no statistically significant difference in sequencing reads recovered from the RexeedTM filtration compared to the unfiltered surface water. This overall approach combining remote sensing, filtration and sequencing provides a novel and potentially more effective, surveillance approach for AIv

Table_3_Assessment of the variation in nutritional composition and safety of dried recovered food from United States households and prospects for use in chicken feed.DOCX

IntroductionNew poultry feed valorization pathways for recovered household food could be enabled by commercially available household devices that dry uneaten food material, arrest spoilage, and preserve nutrient content. However, the nutrient composition, safety, and feed incorporation potential of dried recovered household food (DRHF) is presently unknown.MethodsThirty-eight households spanning 31 states participated in a 4-to-6-week survey to generate and collect food residues that were dried using an in-home device. The DRHF samples were evaluated for chemical composition, digestibility of energy and amino acids, and safety to determine their potential for inclusion in chicken feed.Results and discussionThe DRHF had average levels of 15.9% crude protein, 13.3% crude fat, and 22.6% neutral detergent fiber, and 3.18 kcal/g of nitrogen-adjusted true metabolizable energy (by dry weight). The Windows User-Friendly Feed Formulation 2.1 modeler was used to perform linear programming and develop chicken feed rations for broilers and layers that incorporated DRHF alongside conventional feed ingredients, including corn, soybean meal, dicalcium phosphate, limestone, synthetic amino acids, salt, vitamin premix, and mineral premix. The feed formulation results showed that, on average, DRHF incorporation rates of up to 33 and 37% (by weight) are predicted to avoid any nutrient deficiencies or electrolyte imbalances in the broiler and layer rations, respectively. In the broiler ration, DRHF displaced corn, soybean meal, and limestone to varying degrees, while corn, soybean meal, animal fat, dicalcium phosphate, and limestone were substantially displaced in the layer rations. Addition of vitamin premix was predicted as necessary to facilitate DRHF inclusion in the layer rations. Furthermore, foodborne pathogens, mycotoxins, and heavy metals were either absent or below United States regulatory threshold levels. Measured levels of biogenic amines and fat/oil oxidation were consistent with prior research showing compatibility with chickens. These results can inform future in vivo feeding trials to validate the use of DRHF with varying properties in poultry feed.</p

Table_1_Assessment of the variation in nutritional composition and safety of dried recovered food from United States households and prospects for use in chicken feed.docx

IntroductionNew poultry feed valorization pathways for recovered household food could be enabled by commercially available household devices that dry uneaten food material, arrest spoilage, and preserve nutrient content. However, the nutrient composition, safety, and feed incorporation potential of dried recovered household food (DRHF) is presently unknown.MethodsThirty-eight households spanning 31 states participated in a 4-to-6-week survey to generate and collect food residues that were dried using an in-home device. The DRHF samples were evaluated for chemical composition, digestibility of energy and amino acids, and safety to determine their potential for inclusion in chicken feed.Results and discussionThe DRHF had average levels of 15.9% crude protein, 13.3% crude fat, and 22.6% neutral detergent fiber, and 3.18 kcal/g of nitrogen-adjusted true metabolizable energy (by dry weight). The Windows User-Friendly Feed Formulation 2.1 modeler was used to perform linear programming and develop chicken feed rations for broilers and layers that incorporated DRHF alongside conventional feed ingredients, including corn, soybean meal, dicalcium phosphate, limestone, synthetic amino acids, salt, vitamin premix, and mineral premix. The feed formulation results showed that, on average, DRHF incorporation rates of up to 33 and 37% (by weight) are predicted to avoid any nutrient deficiencies or electrolyte imbalances in the broiler and layer rations, respectively. In the broiler ration, DRHF displaced corn, soybean meal, and limestone to varying degrees, while corn, soybean meal, animal fat, dicalcium phosphate, and limestone were substantially displaced in the layer rations. Addition of vitamin premix was predicted as necessary to facilitate DRHF inclusion in the layer rations. Furthermore, foodborne pathogens, mycotoxins, and heavy metals were either absent or below United States regulatory threshold levels. Measured levels of biogenic amines and fat/oil oxidation were consistent with prior research showing compatibility with chickens. These results can inform future in vivo feeding trials to validate the use of DRHF with varying properties in poultry feed.</p