The microbiota of Idaea inquinata developing on dry herbs

Idaea inquinata (Scopoli) (Lepidoptera: Geometridae, Idaeini) is a potential pest of stored food, mainly dry herbs. In this study, the role of diet in the shaping of the I. inquinata-associated bacterial community was investigated and its impact on insect performance (i.e., proportion of adult emergence and duration of postembryonic development). Larvae were reared on three diets with different nutritional compositions: (1) Matricaria chamomilla L. flowers, (2) Angelica archangelica L. roots, and (3) artificial diet. A DNA metabarcoding approach targeting V1-V2 and V4 regions of the bacterial 16S rRNA was adopted to characterize the bacterial communities associated with adults and larvae reared on different diets, and estimate their composition and diversity. The core microbiota of this species was found to include some bacterial genera commonly associated with Lepidoptera. When a coverage-based integration of rarefaction and extrapolation of Hill numbers was used to compare groups of samples, the microbial diversity (estimated as phylogenetic diversity) differed among individuals reared on different diets, and also between larvae vs. adults. The lowest taxon diversity was found associated with individuals reared on M. chamomilla. Larvae fed with this fiber-rich diet had also a significantly slower development. The composition of the microbial community varied among individuals with different diets, but not between adults vs. larvae. This study highlights the important role of diet in shaping I. inquinata microbiota, but also suggests that the microbiota of non-feeding adult moths could be partially inherited from larvae

RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents

IntroductionOomycetes cause several damaging diseases of plants and animals, and some species also act as biocontrol agents on insects, fungi, and other oomycetes. RNA silencing is increasingly being shown to play a role in the pathogenicity of Phytophthora species, either through trans-boundary movement of small RNAs (sRNAs) or through expression regulation of infection promoting effectors. MethodsTo gain a wider understanding of RNA silencing in oomycete species with more diverse hosts, we mined genome assemblies for Dicer-like (DCL), Argonaute (AGO), and RNA dependent RNA polymerase (RDRP) proteins from Phytophthora plurivora, Ph. cactorum, Ph. colocasiae, Pythium oligandrum, Py. periplocum, and Lagenidium giganteum. Moreover, we sequenced small RNAs from the mycelium stage in each of these species. Results and discussionEach of the species possessed a single DCL protein, but they differed in the number and sequence of AGOs and RDRPs. SRNAs of 21nt, 25nt, and 26nt were prevalent in all oomycetes analyzed, but the relative abundance and 5' base preference of these classes differed markedly between genera. Most sRNAs mapped to transposons and other repeats, signifying that the major role for RNA silencing in oomycetes is to limit the expansion of these elements. We also found that sRNAs may act to regulate the expression of duplicated genes. Other sRNAs mapped to several gene families, and this number was higher in Pythium spp., suggesting a role of RNA silencing in regulating gene expression. Genes for most effector classes were the source of sRNAs of variable size, but some gene families showed a preference for specific classes of sRNAs, such as 25/26 nt sRNAs targeting RxLR effector genes in Phytophthora species. Novel miRNA-like RNAs (milRNAs) were discovered in all species, and two were predicted to target transcripts for RxLR effectors in Ph. plurivora and Ph. cactorum, indicating a putative role in regulating infection. Moreover, milRNAs from the biocontrol Pythium species had matches in the predicted transcriptome of Phytophthora infestans and Botrytis cinerea, and L. giganteum milRNAs matched candidate genes in the mosquito Aedes aegypti. This suggests that trans-boundary RNA silencing may have a role in the biocontrol action of these oomycetes

RNA silencing proteins and small RNAs in oomycete plant pathogens and biocontrol agents

Introduction: Oomycetes cause several damaging diseases of plants and animals, and some species also act as biocontrol agents on insects, fungi, and other oomycetes. RNA silencing is increasingly being shown to play a role in the pathogenicity of Phytophthora species, either through trans-boundary movement of small RNAs (sRNAs) or through expression regulation of infection promoting effectors.Methods: To gain a wider understanding of RNA silencing in oomycete species with more diverse hosts, we mined genome assemblies for Dicer-like (DCL), Argonaute (AGO), and RNA dependent RNA polymerase (RDRP) proteins from Phytophthora plurivora, Ph. cactorum, Ph. colocasiae, Pythium oligandrum, Py. periplocum, and Lagenidium giganteum. Moreover, we sequenced small RNAs from the mycelium stage in each of these species.Results and discussion: Each of the species possessed a single DCL protein, but they differed in the number and sequence of AGOs and RDRPs. SRNAs of 21nt, 25nt, and 26nt were prevalent in all oomycetes analyzed, but the relative abundance and 5’ base preference of these classes differed markedly between genera. Most sRNAs mapped to transposons and other repeats, signifying that the major role for RNA silencing in oomycetes is to limit the expansion of these elements. We also found that sRNAs may act to regulate the expression of duplicated genes. Other sRNAs mapped to several gene families, and this number was higher in Pythium spp., suggesting a role of RNA silencing in regulating gene expression. Genes for most effector classes were the source of sRNAs of variable size, but some gene families showed a preference for specific classes of sRNAs, such as 25/26 nt sRNAs targeting RxLR effector genes in Phytophthora species. Novel miRNA-like RNAs (milRNAs) were discovered in all species, and two were predicted to target transcripts for RxLR effectors in Ph. plurivora and Ph. cactorum, indicating a putative role in regulating infection. Moreover, milRNAs from the biocontrol Pythium species had matches in the predicted transcriptome of Phytophthora infestans and Botrytis cinerea, and L. giganteum milRNAs matched candidate genes in the mosquito Aedes aegypti. This suggests that trans-boundary RNA silencing may have a role in the biocontrol action of these oomycetes.</p

A new scoring system to stratify risk in unstable angina

BACKGROUND: We performed this study to develop a new scoring system to stratify different levels of risk in patients admitted to hospital with a diagnosis of unstable angina (UA), which is a complex syndrome that encompasses different outcomes. Many prognostic variables have been described but few efforts have been made to group them in order to enhance their individual predictive power. METHODS: In a first phase, 473 patients were prospectively analyzed to determine which factors were significantly associated with the in-hospital occurrence of refractory ischemia, acute myocardial infarction (AMI) or death. A risk score ranging from 0 to 10 points was developed using a multivariate analysis. In a second phase, such score was validated in a new sample of 242 patients and it was finally applied to the entire population (n = 715). RESULTS: ST-segment deviation on the electrocardiogram, age ≥ 70 years, previous bypass surgery and troponin T ≥ 0.1 ng/mL were found as independent prognostic variables. A clear distinction was shown among categories of low, intermediate and high risk, defined according to the risk score. The incidence of the triple end-point was 6 %, 19.2 % and 44.7 % respectively, and the figures for AMI or death were 2 %, 11.4 % and 27.6 % respectively (p < 0.001). CONCLUSIONS: This new scoring system is simple and easy to achieve. It allows a very good stratification of risk in patients having a clinical diagnosis of UA. They may be divided in three categories, which could be of help in the decision-making process

Measurement of the atmospheric muon flux with the NEMO Phase-1 detector

The NEMO Collaboration installed and operated an underwater detector including prototypes of the critical elements of a possible underwater km3 neutrino telescope: a four-floor tower (called Mini-Tower) and a Junction Box. The detector was developed to test some of the main systems of the km3 detector, including the data transmission, the power distribution, the timing calibration and the acoustic positioning systems as well as to verify the capabilities of a single tridimensional detection structure to reconstruct muon tracks. We present results of the analysis of the data collected with the NEMO Mini-Tower. The position of photomultiplier tubes (PMTs) is determined through the acoustic position system. Signals detected with PMTs are used to reconstruct the tracks of atmospheric muons. The angular distribution of atmospheric muons was measured and results compared with Monte Carlo simulations.Comment: Astrop. Phys., accepte

Discovery of four recessive developmental disorders using probabilistic genotype and phenotype matching among 4,125 families.

Discovery of most autosomal recessive disease-associated genes has involved analysis of large, often consanguineous multiplex families or small cohorts of unrelated individuals with a well-defined clinical condition. Discovery of new dominant causes of rare, genetically heterogeneous developmental disorders has been revolutionized by exome analysis of large cohorts of phenotypically diverse parent-offspring trios. Here we analyzed 4,125 families with diverse, rare and genetically heterogeneous developmental disorders and identified four new autosomal recessive disorders. These four disorders were identified by integrating Mendelian filtering (selecting probands with rare, biallelic and putatively damaging variants in the same gene) with statistical assessments of (i) the likelihood of sampling the observed genotypes from the general population and (ii) the phenotypic similarity of patients with recessive variants in the same candidate gene. This new paradigm promises to catalyze the discovery of novel recessive disorders, especially those with less consistent or nonspecific clinical presentations and those caused predominantly by compound heterozygous genotypes

Piezomagnetic fields due to an inclined rectangular fault in a viscoelastic half-space: an application to the 2002–2003 Etna eruption

Time-dependent piezomagnetic fields due to inclined rectangular faults embedded in a viscoelastic, homogeneous half-space were investigated. A viscoelastic rheology of the surrounding medium was assumed to relate piezomagnetic changes at the surface to the stress field at depth. The viscosity of the medium strongly influences time-dependent stress changes. Especially in volcanic areas, rocks near magmatic sources are considerably heated. The presence of higher temperatures produces a lower effective viscosity in the crust, making it necessary to consider its inelastic properties. Rocks no longer behave in a purely elastic manner but permanently deform because the viscosity is significantly lowered. To determine the time-dependent piezomagnetic fields in a viscoelastic medium, we applied the Correspondence Principle to the analytical elastic solutions for dislocation sources. Among all the possible rheological models, we investigated three cases in which the bulk modulus is purely elastic and the shear modulus relaxes as for (i) a Maxwell solid, (ii) a standard linear solid (SLS) and (iii) a Kelvin solid. The piezomagnetic field completely vanishes after the relaxation process for a Maxwell rheology, whereas it is found to decrease over time and reach some finite offset values for SLS and Kelvin rheologies. A real case study concerning the magnetic anomalies observed during the 2002–2003 Mt Etna eruption is also investigated. Post-eruptive magnetic variations were in general agreement with a viscoelastic relaxation process of a SLS rheology undergoing in the volcano edifice

Piezomagnetic fields due to an inclined rectangular fault in a viscoelastic half-space: an application to the 2002–2003 Etna eruption

Time-dependent piezomagnetic fields due to inclined rectangular faults embedded in a viscoelastic, homogeneous half-space were investigated. A viscoelastic rheology of the surrounding medium was assumed to relate piezomagnetic changes at the surface to the stress field at depth. The viscosity of the medium strongly influences time-dependent stress changes. Especially in volcanic areas, rocks near magmatic sources are considerably heated. The presence of higher temperatures produces a lower effective viscosity in the crust, making it necessary to consider its inelastic properties. Rocks no longer behave in a purely elastic manner but permanently deform because the viscosity is significantly lowered. To determine the time-dependent piezomagnetic fields in a viscoelastic medium, we applied the Correspondence Principle to the analytical elastic solutions for dislocation sources. Among all the possible rheological models, we investigated three cases in which the bulk modulus is purely elastic and the shear modulus relaxes as for (i) a Maxwell solid, (ii) a standard linear solid (SLS) and (iii) a Kelvin solid. The piezomagnetic field completely vanishes after the relaxation process for a Maxwell rheology, whereas it is found to decrease over time and reach some finite offset values for SLS and Kelvin rheologies. A real case study concerning the magnetic anomalies observed during the 2002–2003 Mt Etna eruption is also investigated. Post-eruptive magnetic variations were in general agreement with a viscoelastic relaxation process of a SLS rheology undergoing in the volcano edifice