Assessment of limits for racing speed in the Italian trotter population

The current world record for trotter is 68.0 s/km, that is better than the estimates of record limit reported in literature (68.2 s/km for males and 69.1 s/km for females in Swedish Trotters): this is way the record limit was investigated in Italian Trotter using the same methodology applied to Swedish Trotter. The best racing times of 30'587 3-5 year old Italian Trotters, recorded between January 1st, 1992, and October 31th, 2009, have been log transformed to check for trends and asymptotic limit: a positive trend is present, and limits of 61.8 s/km and 62.8 s/km have been respectively estimated for males and females. The Generalized Extreme Value theory, applied to the 3-year old winners of the Italian Trot Derby, estimates a limit of 64.7 s/km. These results indicate that the limit for racing speed is still far from actual values

Optimization of the Performance Test Length for theSella ItalianoStallion

The Sella Italiano stallions are selected by 100-day perfomance test, but many breeders organisations use station test of shorter length. In twelve editions, 17,394 ten-point scores both for character and gaits, and 6291 scores for jumping were assigned to 314 candidate stallions. By means of the comparison of univariate EBVs, calculated from the complete dataset or from the reduced subsets, a dataset lasting only from 33rd day to 78th day of the training period was selected: it included less than 70% of the original data. The subset was validated by 3-trait AM BLUP: there were no evident effects on the estimates of variance component or ratio, and the aggregated selection index for the three traits showed a 99% rank correlation with the official index. These findings demonstrate that the training period could be reduced without affecting the genetic progress in the Sella Italiano breed

Analysis of founders and performance test effects on an autochthonous horse population through pedigree analysis: structure, genetic variability and inbreeding.

The Maremmano is an autochthonous Italian horse breed, which probably descended from the native horses of the Etruscans (VI century B.C.); the Studbook was acknowledged in 1980, and it includes 12 368 horses born from that year up to 2015. The aim of this study was to evaluate the effect of the selection program on the genetic variability of the Maremmano population; the analysis was performed using both the 'Endog v 4.8' program available at http://webs.ucm.es/info/prodanim/html/JP_Web.htm and in-house software on official pedigree data. Four Reference Populations were considered, and the most important one was the population of the 12 368 Maremmano horses officially registered in the National Studbook. The pedigree completeness of this population was very good because it was more than 90% at the third parental generation and more than 70% at the fifth generation; the pedigree traced back to a maximum of 10.50 generations with an average of 3.30 complete generations and 5.70 equivalent complete generations. The average generation interval was 10.65±4.72 years, with stallions used for longer periods than mares. The intervals ranged from 10.15±4.45 (mother-daughter) to 10.99±4.93 (father-daughter). The effective number of founders (f e) was 74 and the effective number of ancestors (f a) was 30 so that the ratio f e/f a was 2.47. The founder genome equivalents (f g) was 13.72 with a ratio f g/f e equal to 0.18. The mean of the genetic conservation index was 5.55±3.37, and it ranged from 0.81 to 21.32. The average inbreeding coefficient was 2.94%, with an increase of 0.1%/year, and the average relatedness coefficient was 5.52%. The effective population size (N e) computed by an individual increase in inbreeding was 68.1±13.00; the N e on equivalent generations was 42.00, and this value slightly increased to 42.20 when computed by Log regression on equivalent generations. The analysis confirmed the presence of seven traditional male lines. The percentage of Thoroughbred blood in the foals born in 2015 was 20.30% and has increased 0.21%/year since 1980; in particular, it increased more than twice (0.51%/year) until 1993 and afterwards slightly fluctuated. The pedigree analysis confirmed the completeness of genealogical information and the traditional importance that breeders gave to the male lines; although the genetic diversity of Maremmano seemed to be not endangered by the selection program, some effects on the population structure were found and a more scientific approach to genetic conservation should be incorporated in the selection plans

the use of a random regression model on the estimation of genetic parameters for weight at performance test in appenninica sheep breed

The Appenninica breed is an Italian meat sheep; the rams are approved according to a phenotypic index that is based on an average daily gain at performance test. The 8546 live weights of 1930 Appenninica male lambs tested in the performance station of the ASSONAPA (National Sheep Breeders Association, Italy) from 1986 to 2010 showed a great variability in age at weighing and in number of records by year. The goal of the study is to verify the feasibility of the estimation of a genetic index for weight in the Appenninica sheep by a mixed model, and to explore the use of random regression to avoid the corrections for weighing at different ages. The heritability and repeatability (mean±SE) of the average live weight were 0.27±0.04 and 0.54±0.08 respectively; the heritabilities of weights recorded at different weighing days ranged from 0.27 to 0.58, while the heritabilities of weights at different ages showed a narrower variability (0.29÷0.41). The estimates of live weight heritability by random regressions ranged between 0.34 at 123 d of age and 0.52 at 411 d. The results proved that the random regression model is the most adequate to analyse the data of Appenninica breed

Exercise-induced up-regulation of MMP-1 and IL-8 genes in endurance horses

<p>Abstract</p> <p>Background</p> <p>The stress response is a critical factor in the training of equine athletes; it is important for performance and for protection of the animal against physio-pathological disorders.</p> <p>In this study, the molecular mechanisms involved in the response to acute and strenuous exercise were investigated using peripheral blood mononuclear cells (PBMCs).</p> <p>Results</p> <p>Quantitative real-time PCR (qRT-PCR) was used to detect modifications in transcription levels of the genes for matrix metalloproteinase-1 (<it>MMP-1</it>) and interleukin 8 (<it>IL-8</it>), which were derived from previous genome-wide expression analysis. Significant up-regulation of these two genes was found in 10 horses that had completed a race of 90–120 km in a time-course experimental design.</p> <p>Conclusion</p> <p>These results suggest that <it>MMP-1 </it>and <it>IL-8 </it>are both involved in the exercise-induced stress response, and this represents a starting point from which to understand the adaptive responses to this phenomenon.</p

Pre-selection of most significant SNPS for the estimation of genomic breeding values

The availability of a large amount of SNP markers throughout the genome of different livestock species offers the opportunity to estimate genomic breeding values (GEBVs). However, the estimation of many effects in a data set of limited size represent a severe statistical problem. A pre-selection of SNPS based on single regression may provide a reasonable compromise between accuracy of results, number of independent variables to be considered and computing requirements

Suitability of linear scoring in meat sheep: the practical case of Merinizzata Italiana breed

Linear scoring is widely applied in domestic animal species, mainly in cattle and horses. There are only few cases of linear scoring in sheep, probably because the small body size and the narrow range of the classes make difficult to correctly evaluate the measures. In this paper the results of a linear scoring test carried out on Merinizzata Italiana sheep breed in order to verify the feasibility of this method in sheep, are reported. Twenty untrained people, with three different levels of scoring experience in meat sheep morphology, evaluated 52 pluriparous ewes for body length, chest circumference, chest width, rump height, rump width, and withers height; to check for misclassification, their scores were compared with a reference score, previously obtained measuring the same animals by the suitable tools (measuring tape and a Lydtin stick). The percentage of correct scoring ranged from 44.4% for body length to 61.8% for withers height, and was not affected by the experience of the judge. In all characters, the distance of the class from the trait mean had a significant effect in increasing the intensity of misclassifications; the judge's experience showed a positive effect in reducing the intensity of the misclassification for body length, that was the hardest trait to score. These results encourage to further verifying in practice the linear scoring in the Merinizzata Italiana sheep and in other meat breeds

Variability of fibre quality on Chinese Alashan Left Banner White Cashmere goat

The heritability and the phenotypic and genetic correlations of down weight (DW), down fibre diameter (DFD), and coefficient of variation of the down fibre diameter (CVDFD) of Chinese Alashan Left Banner White Cashmere goat were estimated on 1375 one-year-old animals, born in 2009, 2011 and 2013 and bred at the Station for Livestock Improvement of Alashan (Left Banner, Inner Mongolia, P.R. China). For all traits, significant effects were for sex, cohort and sex–cohort interaction (p < .001). The heritability for DFD and CVDFD was high, 0.41 ± 0.08 and 0.52 ± 0.06, respectively. Heritability for the DW was low (0.12 ± 0.03). Phenotypic correlation calculated by Pearson's coefficient showed that DFD is positively correlated with both CVDFD (0.29 ± 0.07) and DW (0.20 ± 0.05). The phenotypic correlation between CVDFD and DW was negative (−0.11 ± 0.06). The genetic correlations between DW and CVDFD and between DFD and CVDFD were both high and positive (0.63 ± 0.16 and 0.39 ± 0.1, respectively) while the DW showed a negative genetic correlation with DFD (−0.27 ± 0.2). Our results suggest that the selection for reducing DFD and its CVDFD is possible and a genetic progress can be achieved quickly in the Chinese Alashan Left Banner White Cashmere goat

Use of Spline function for the characterisation on peak yield, peak day and persistency in lactation curves in Murciano-Granadina goats

The objective of this study was to characterise the peak yield (PY), peak day (PD) and the persistency (P) of the lactation curve of Murciano-Granadina goats by Spline considering the variation factors (region, type of kidding, lactation number and season) and their levels. A total of 1,349,347 test-day records from 180,872 lactations, of 85,404 goats were used. The analysed data with Spline model was considered for adequate fit in lactation curves for others traits in these goats. All factors affected the scale and/or shape of the lactation curve. In the region factor, significant differences (SD, p  .05) between regions. The type of kidding presented SD among its levels (evident between double versus single and triple) with the exception of the PY. The lactation number for the variables of PD, PY and TY from second to fifth lactation showed NSD among themselves; but it did in the case of the first. The P of first lactation was longer, with a decrease in subsequent lactations. In the season factor, PD, TY and P presented SD; where the PD was divided into two groups: late group (winter-spring) and early group (fall-winter). The P, PY and PD can be considered as an additional selection criterion and thus modify the lactation curve.Highlights The biomodeling of individualized lactation curves is an important information resource for farmers and their breeding program. A conglomerate of microeffects such us climate, photoperiod, agroecological aspects, affect parameters of the lactation curve and their productions. It is preferable to achieve lactations with more emphasis on persistency in order to provide animal welfare and obtain adequate economic benefits

Tendencias genéticas y fenotípicas para pico productivo, rendimiento lechero y persistencia de lactación en la raza Murciano-Granadina

El objetivo fue evaluar las tendencias genéticas (TG) y fenotípicas (TF) para los caracteres de pico productivo (PP), rendimiento lechero (RL) y persistencia de la lactación (P) en la curva de lactación de la raza Murciano-Granadina (MG). Para ello se utilizaron 180,872 lactaciones, de 85,404 cabras (registros históricos de 1990-2012). Para la obtención de los caracteres de interés (PP, RL y P) se realizó la biomodelación de curvas de lactación mediante el modelo Spline usando el software "R". Los valores genéticos (VG) se obtuvieron mediante modelo animal univariado con observaciones repetidas, empleándose el paquete MTDFREML. Las TG y TF se estimaron vía mínimos cuadrados en una regresión del promedio de los VG e información productiva conocida según el año de nacimiento. En el cálculo de las TG y TF se obtuvieron coeficientes de regresión lineal (b), donde los valores b para PP, RL y P fueron de +0.00071, +0.00698; +0.00114, +0.01117 y +0.00002, -0.00076; respectivamente. El trayecto de TG, TF de PP y RL se comportó de la misma manera siguiendo una línea de tendencia ascendente con presencia de intervalos de crecimiento y decrecimiento. La TG de P mostró un comportamiento estacional y la TF fue descendente con puntos más consistentes en su recorrido; reforzando la idea de que altas producciones van en detrimento de la P. Estos resultados permiten informar a los criadores del comportamiento de estos caracteres y considerar la incorporación de la persistencia de la lactación como criterio de selección en el programa genético de la raza