Sensing and control of segmented mirrors with a pyramid wavefront sensor in the presence of spiders

The segmentation of the telescope pupil (by spiders & the segmented M4) create areas of phase isolated by the width of the spiders on the wavefront sensor (WFS), breaking the spatial continuity of the wavefront. The poor sensitivity of the Pyramid WFS (PWFS) to differential piston leads to badly seen and therefore uncontrollable differential pistons. In close loop operation, differential pistons between segments will settle around integer values of the average sensing wavelength. The differential pistons typically range from one to ten times the sensing wavelength and vary rapidly over time, leading to extremely poor performance. In addition, aberrations created by atmospheric turbulence will contain large amounts of differential piston between the segments. Removing piston contribution over each of the DM segments leads to poor performance. In an attempt to reduce the impact of unwanted differential pistons that are injected by the AO correction, we compare three different approaches. We first limit ourselves to only use the information measured by the PWFS, in particular by reducing the modulation. We show that using this information sensibly is important but will not be sufficient. We discuss possible ways of improvement by using prior information. A second approach is based on phase closure of the DM commands and assumes the continuity of the correction wavefront over the entire unsegmented pupil. The last approach is based on the pair-wise slaving of edge actuators and shows the best results. We compare the performance of these methods using realistic end-to-end simulations. We find that pair-wise slaving leads to a small increase of the total wavefront error, only adding between 20-45 nm RMS in quadrature for seeing conditions between 0.45-0.85 arcsec. Finally, we discuss the possibility of combining the different proposed solutions to increase robustness.Comment: 12 pages, 15 figures, AO4ELT5 Proceedings, Adaptive Optics for Extremely Large Telescopes 5, Conference Proceeding, Tenerife, Canary Islands, Spain, June 25-30, 201

Evaluation des déformations du myocarde sur des séquences temporelles d'images IRM par estimation contrainte du flot optique

- Ce travail a pour objectif l'estimation du champ de déformation du myocarde sur des séquences d'images IRM non marquées en vue de l'évaluation de la fonction cardiaque. Nous évaluons, par une méthode de segmentation et de mise en correspondance des contours du myocarde, un champ de vitesse épars utilisé comme contrainte dans le calcul du flot optique. Une validation clinique de la méthode d'estimation des déformations myocardiques à partir de ciné IRM standard a permis d'envisager l'évaluation précise de la viabilité du tissu cardiaque en routine clinique

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

BACKGROUND: The recent availability of complete sequences for numerous closely related bacterial genomes opens up new challenges in comparative genomics. Several methods have been developed to align complete genomes at the nucleotide level but their use and the biological interpretation of results are not straightforward. It is therefore necessary to develop new resources to access, analyze, and visualize genome comparisons. DESCRIPTION: Here we present recent developments on MOSAIC, a generalist comparative bacterial genome database. This database provides the bacteriologist community with easy access to comparisons of complete bacterial genomes at the intra-species level. The strategy we developed for comparison allows us to define two types of regions in bacterial genomes: backbone segments (i.e., regions conserved in all compared strains) and variable segments (i.e., regions that are either specific to or variable in one of the aligned genomes). Definition of these segments at the nucleotide level allows precise comparative and evolutionary analyses of both coding and non-coding regions of bacterial genomes. Such work is easily performed using the MOSAIC Web interface, which allows browsing and graphical visualization of genome comparisons. CONCLUSION: The MOSAIC database now includes 493 pairwise comparisons and 35 multiple maximal comparisons representing 78 bacterial species. Genome conserved regions (backbones) and variable segments are presented in various formats for further analysis. A graphical interface allows visualization of aligned genomes and functional annotations. The MOSAIC database is available online at http://genome.jouy.inra.fr/mosaic

Novel phosphate–phosphonate hybrid nanomaterials applied to biology

International audienceA new process for preparing oligonucleotide arrays is described that uses surface grafting chemistry which is fundamentally different from the electrostatic adsorption and organic covalent binding methods normally employed. Solid supports are modified with a mixed organic/inorganic zirconium phosphonate monolayer film providing a stable, well-defined interface. Oligonucleotide probes terminated with phosphate are spotted directly to the zirconated surface forming a covalent linkage. Specific binding of terminal phosphate groups with minimal binding of the internal phosphate diesters has been demonstrated. On the other hand, the reaction of a bisphosphonate bone resorption inhibitor (Zoledronate) with calcium deficient apatites (CDAs) was studied as a potential route to local drug delivery systems active against bone resorption disorders. A simple mathematical model of the Zoledronate/CDA interaction was designed that correctly described the adsorption of Zoledronate onto CDAs. The resulting Zoledronate-loaded materials were found to release the drug in different phosphate-containing media, with a satisfactory agreement between experimental data and the values predicted from the model

Novel calcium phosphate/PCL graded samples: Design and development in view of biomedical applications

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Ultrafast polarization-tunable monochromatic extreme ultraviolet source at high-repetition-rate

International audienceWe report on the development of a high-order harmonic generation (HHG)-based ultrafast high-repetition-rate (250 kHz) monochromatic extreme ultraviolet (21.6 eV) source with polarization tunability, specifically designed for multi-modal dichroism in time- and angle-resolved photoemission spectroscopy. Driving HHG using an annular beam allows us to spatially separate the high-power 515 nm driving laser from the XUV beamlet while preserving the linear polarization axis angle tunability. This enables controlling the polarization state of the XUV radiation with a fixed all-reflective phase-shifter. This scheme leads to a source brightness of 5.7 × 10 12 photons s −1 at 21.6 eV (up to 4 × 10 11 photons s −1 on target) with ellipticities as high as 90%

Drought effects on damage by forest insects and pathogens : a meta-analysis

International audienceIn the context of climate change, the effects of prolonged or more severe droughts on pest and pathogen damage are a major concern for forest ecosystems. To date, there is great uncertainty about the direction, magnitude and sources of variation in responses to drought by insects and fungi. We report the outcomes of a meta-analysis of 100 pairwise comparisons of insect pest or pathogen damage to water-stressed and control trees from 40 publications. The type of feeding substrate for insects and fungi and the water stress severity emerged as the main factors influencing the level of damage in water-stressed trees. Overall, primary damaging agents living in wood caused significantly lower damage to the water-stressed trees compared with the control, whereas primary pests and pathogens living on foliage caused more damage to water-stressed trees, in all cases irrespective of stress severity. In contrast, damage by secondary agents increased with stress severity, which was best estimated by the ratio between the predawn leaf water potential in stressed trees and the xylem pressure inducing 50% loss in hydraulic conductance due to cavitation, a species-specific index of drought tolerance. Insect and fungus feeding behaviour, affected tree part, and water stress severity are therefore proposed as three important predictors of forest damage in drought conditions