Multivariate meta-analysis of QTL mapping studies

A large number of quantitative trait loci (QTLs) for milk production and quality traits in dairy cattle has been reported in literature. The large amount of information available could be exploited by meta-analyses to draw more general conclusions from results obtained in different experimental conditions (animals, statistical methodologies). QTL meta-analyses have been carried out to estimate the distribution of QTL effects in livestock and to find consensus on QTL position. In this study, multivariate dimension reduction techniques are used to analyse a database of dairy cattle QTL published results, in order to extract latent variables able to characterise the research. A total of 92 papers by 72 authors were found on 25 scientific Journals for the period January 1995-February 2008. More than thirty parameters were picked up from the articles. To overcome the problem of different map location, the flanking markers were mapped on release 4.1 of the Bos taurus genome sequence (www.ensembl. org). Their position was retrieved from public databases and, when absent, was calculated in silico by blasting (http://blast.wustl.edu/) the markers’ nucleotide sequence against the genomic sequence. Records were discarded if flanking markers or P-values were not available. After these edits, the final archive consisted of 1,162 records. Seven selected variables were analysed both with the Factor Analysis (FA), combined with the varimax rotation technique, and Principal Component Analysis (PCA). FA was able to explain 68% of the original variability with 3 latent factors: the first factor extracted was highly associated (factor loading of 0.98) to marker location along the chromosome and could be considered as a marker map index; the second factor showed factor loadings of 0.74 and 0.84 related to the variable number of animals involved and year of the experiment, respectively, and it can be regarded as an indicator of the dimension of the study; the third factor was correlated to the significance level of the statistical test (0.78), number of families (0.63), and, negatively, to the marker density (-0.43). It can be named as index of power of the experiment. Same patterns can be observed in the eigenvectors of PCA. Four PCs were able to explain about 80% of the original variance. The first two PCs basically underlined accurately the same structure found with the first two factors in FA, whereas PC3 and PC4 summarized the structure of F3. The score that each QTL gets on each Factor or PC could be useful to classify the original QTL records and make them more comparable once that the redundancy of information has been removed

Study of Holtermanniella wattica, Leucosporidium creatinivorum, Naganishia adeliensis, Solicoccozyma aeria, and Solicoccozyma terricola for their lipogenic aptitude from different carbon sources

Background The ability of some microorganisms to accumulate lipids is well known; however, only recently the number of studies on microbial lipid biosynthesis for obtaining oleochemical products, namely biofuels and some building blocks for chemistry, is rapidly and spectacularly increased. Since 1990s, some oleaginous yeasts were studied for their ability to accumulate lipids up to 60\u201370% of their dry weight. Due to the vast array of engineering techniques currently available, the recombinant DNA technology was the main approach followed so far for obtaining lipid-overproducing yeasts, mainly belonging to the Yarrowia lipolytica. However, an alternative approach can be offered by worldwide diversity as source of novel oleaginous yeasts. Lipogenic aptitude of a number of yeast strains has been reviewed, but many of these studies utilized a limited number of species and/or different culture conditions that make impossible the comparison of different results. Accordingly, the lipogenic aptitude inside the yeast world is still far from being fully explored, and finding new oleaginous yeast species can acquire a strategic importance. Results Holtermanniella wattica, Leucosporidium creatinivorum, Naganishia adeliensis, Solicoccozyma aeria, and Solicoccozyma terricola strains were selected as a result of a large-scale screening on 706 yeasts (both Ascomycota and Basidiomycota). Lipid yields and fatty acid profiles of selected strains were evaluated at 20 and 25 \ub0C on glucose, and on glycerol, xylose, galactose, sucrose, maltose, and cellobiose. A variable fatty acid profile was observed in dependence of both temperature and different carbon sources. On the whole, L. creatinivorum exhibited the highest performances: total lipid yield (YL) >7 g/l on glucose and glycerol, % of intracellular lipids on cell biomass (YL/DW) >70% at 20 \ub0C on glucose, lipid coefficient (YL/Glu) around 20% on glucose, and daily productivity (YL/d) on glucose and sucrose >1.6 g/(l*d). Conclusions This study provides some meaningful information about the lipogenic ability of some yeast species. Variable lipid yields and fatty acid profiles were observed in dependence of both temperature and different carbon sources. L. creatinivorum exhibited the highest lipogenic performances

Trans-synaptic degeneration in the optic pathway. A study in clinically isolated syndrome and early relapsing-remitting multiple sclerosis with or without optic neuritis

Increasing evidence suggest that neuronal damage is an early and diffuse feature of Multiple Sclerosis (MS) pathology. Analysis of the optic pathway may help to clarify the mechanisms involved in grey matter damage in MS. Purpose of our study was to investigate the relationship between inflammation and neurodegeneration and to achieve evidence of trans-synaptic degeneration in the optic pathway in MS at clinical onset

A VLBI experiment using a remote atomic clock via a coherent fibre link

We describe a VLBI experiment in which, for the first time, the clock reference is delivered from a National Metrology Institute to a radio telescope using a coherent fibre link 550 km long. The experiment consisted of a 24-hours long geodetic campaign, performed by a network of European telescopes; in one of those (Medicina, Italy) the local clock was alternated with a signal generated from an optical comb slaved to a fibre-disseminated optical signal. The quality of the results obtained with this facility and with the local clock is similar: interferometric fringes were detected throughout the whole 24-hours period and it was possible to obtain a solution whose residuals are comparable to those obtained with the local clock. These results encourage further investigation of the ultimate VLBI performances achievable using fibre dissemination at the highest precision of state-of-the-art atomic clocks

Second-order amplitudes in loop quantum gravity

We explore some second-order amplitudes in loop quantum gravity. In particular, we compute some second-order contributions to diagonal components of the graviton propagator in the large distance limit, using the old version of the Barrett-Crane vertex amplitude. We illustrate the geometry associated to these terms. We find some peculiar phenomena in the large distance behavior of these amplitudes, related with the geometry of the generalized triangulations dual to the Feynman graphs of the corresponding group field theory. In particular, we point out a possible further difficulty with the old Barrett-Crane vertex: it appears to lead to flatness instead of Ricci-flatness, at least in some situations. The observation raises the question whether this difficulty remains with the new version of the vertex.Comment: 22 pages, 18 figure

The Northern Cross Fast Radio Burst project -- III. The FRB-magnetar connection in a sample of nearby galaxies

Fast radio bursts (FRBs) are millisecond radio transients observed at cosmological distances. The nature of their progenitors is still a matter of debate, although magnetars are invoked by most models. The proposed FRB-magnetar connection was strengthened by the discovery of an FRB-like event from the Galactic magnetar SGR J1935+2154. In this work, we aim to investigate how prevalent magnetars such as SGR J1935+2154 are within FRB progenitors. We carried out an FRB search in a sample of seven nearby (< 12 Mpc) galaxies with the Northern Cross radio telescope for a total of 692 h. We detected one 1.8 ms burst in the direction of M101 with a fluence of $58 \pm 5$ Jy ms. Its dispersion measure of 303 pc cm$^{-3}$ places it most-likely beyond M101. Considering that no significant detection comes indisputably from the selected galaxies, we place a 38 yr$^{-1}$ upper limit on the total burst rate (i.e. including the whole sample) at the 95\% confidence level. This upper limit constrains the event rate per magnetar $\lambda_{\rm mag} < 0.42$ magnetar$^{-1}$ yr$^{-1}$ or, if combined with literature observations of a similar sample of nearby galaxies, it yields a joint constraint of $\lambda_{\rm mag} < 0.25$ magnetar$^{-1}$ yr$^{-1}$. We also provide the first constraints on the expected rate of FRBs hypothetically originating from ultraluminous X-ray (ULX) sources, since some of the galaxies observed during our observational campaign host confirmed ULXs. We obtain $< 13$ yr$^{-1}$ per ULX for the total sample of galaxies observed. Our results indicate that bursts with energies $E>10^{34}$ erg from magnetars like SGR J1935+2154 appear more rarely compared to previous observations and further disfavour them as unique progenitors for the cosmological FRB population, leaving more space open to the contribution from a population of more exotic magnetars, not born via core-collapsed supernovae.Comment: 9 pages, 4 figures, published in A&

Comparing Remote Atomic Clocks via VLBI Networks and Fiber Optic Links: the LIFT/MetGeSp Perspective

Very Long Baseline Interferometry experiments require an extremely precise synchronization between the atomic clocks keeping the time and frequency standards at radiotelescope observatories. Recently the availability of fiber optic links from a few radio observatories and their national metrological institutes has made the streaming of extremely stable frequency standards via optical atomic clocks possible (even two orders of magnitudes better than Rubidium or Hydrogen maser standards). Firstly, we present the infrastructure of the Italian Link for Frequency and Time (LIFT) and results of the MetGeSp project aimed at finally creating a common clock between two of the antennas of the VLBI Italian Network. Secondly, the results are shown from VLBI experiments in which the rms phase noise was used to accurately compare the synchronicity of atomic clocks located at a few European stations (Medicina, Noto, Yebes, Torun, and Matera). VLBI clock timing proves a valid alternative to satellite-based techniques such as the Global Navigation Satellite System or the Two-Way Satellite Time and Frequency Transfer

Guidelines on the management of abdominal aortic aneurysms: updates from the Italian Society of Vascular and Endovascular Surgery (SICVE)

The objective of these Guidelines was to revise and update the previous 2016 Italian Guidelines on Abdominal Aortic Aneurysm Disease, in accordance with the National Guidelines System (SNLG), to guide every practitioner toward the most correct management pathway for this pathology. The methodology applied in this update was the GRADE-SIGN version methodology, following the instructions of the AGREE quality of reporting checklist as well. The first methodological step was the formulation of clinical questions structured according to the PICO (Population, Intervention, Comparison, Outcome) model according to which the Recommendations were issued. Then, systematic reviews of the Literature were carried out for each PICO question or for homogeneous groups of questions, followed by the selection of the articles and the assessment of the methodological quality for each of them using qualitative checklists. Finally, a Considered Judgment form was filled in for each clinical question, in which the features of the evidence as a whole are assessed to establish the transition from the level of evidence to the direction and strength of the recommendations. These guidelines outline the correct management of patients with abdominal aortic aneurysm in terms of screening and surveillance. Medical management and indication for surgery are discussed, as well as preoperative assessment regarding patients' background and surgical risk evaluation. Once the indication for surgery has been established, the options for traditional open and endovascular surgery are described and compared, focusing specifically on patients with ruptured abdominal aortic aneurysms as well. Finally, indications for early and late postoperative follow-up are explained. The most recent evidence in the Literature has been able to confirm and possibly modify the previous recommendations updating them, likewise to propose new recommendations on prospectively relevant topics

The First Geodetic VLBI Field Test of LIFT: a 550-km-long Optical Fiber Link for Remote Antenna Synchronization

We present the first field test of the implementation of a coherent optical fiber link for remote antenna synchronization realized in Italy between the Italian Metrological Institute (INRIM) and the Medicina radio observatory of the National Institute for Astrophysics (INAF). The Medicina VLBI antenna participated in the EUR137 experiment carried out in September 2015 using, as reference systems, both the local H-maser and a remote H-maser hosted at the INRIM labs in Turin, separated by about 550 km. In order to assess the quality of the remote clock, the observed radio sources were split into two sets, using either the local or the remote H-maser. A system to switch automatically between the two references was integrated into the antenna field system. The observations were correlated in Bonn and preliminary results are encouraging since fringes were detected with both time references along the full 24 hours of the session. The experimental set-up, the results, and the perspectives for future radio astronomical and geodetic experiments are presented