1,612 research outputs found

    Whole genome comparisons reveal panmixia among fall armyworm (Spodoptera frugiperda) from diverse locations

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    Background: The fall armyworm (Spodoptera frugiperda (J.E. Smith)) is a highly polyphagous agricultural pest with long-distance migratory behavior threatening food security worldwide. This pest has a host range of > 80 plant species, but two host strains are recognized based on their association with corn (C-strain) or rice and smaller grasses (R-strain). The population genomics of the United States (USA) fall armyworm remains poorly characterized to date despite its agricultural threat. Results: In this study, the population structure and genetic diversity in 55 S. frugiperda samples from Argentina, Brazil, Kenya, Puerto Rico and USA were surveyed to further our understanding of whole genome nuclear diversity. Comparisons at the genomic level suggest a panmictic S. frugiperda population, with only a minor reduction in gene flow between the two overwintering populations in the continental USA, also corresponding to distinct host strains at the mitochondrial level. Two maternal lines were detected from analysis of mitochondrial genomes. We found members from the Eastern Hemisphere interspersed within both continental USA overwintering subpopulations, suggesting multiple individuals were likely introduced to Africa. Conclusions: Our research is the largest diverse collection of United States S. frugiperda whole genome sequences characterized to date, covering eight continental states and a USA territory (Puerto Rico). The genomic resources presented provide foundational information to understand gene flow at the whole genome level among S. frugiperda populations. Based on the genomic similarities found between host strains and laboratory vs. field samples, our findings validate the experimental use of laboratory strains and the host strain differentiation based on mitochondria and sex-linked genetic markers extends to minor genome wide differences with some exceptions showing mixture between host strains is likely occurring in field populations.Fil: Schlum, Katrina A.. University of Tennessee; Estados UnidosFil: Lamour, Kurt. University of Tennessee; Estados UnidosFil: Placidi de Bortoli, Caroline. University of Tennessee; Estados UnidosFil: Banerjee, Rahul. University of Tennessee; Estados UnidosFil: Meagher, Robert. United States Department Of Agriculture. Center For Medical Agric And Vet Entomology; Estados UnidosFil: Pereira, Eliseu. Universidade Federal de Viçosa; BrasilFil: MurĂșa, MarĂ­a Gabriela. Consejo Nacional de Investigaciones CientĂ­ficas y TĂ©cnicas. Centro CientĂ­fico TecnolĂłgico Conicet - TucumĂĄn. Instituto de TecnologĂ­a Agroindustrial del Noroeste Argentino. Provincia de TucumĂĄn. Ministerio de Desarrollo Productivo. EstaciĂłn Experimental Agroindustrial "Obispo Colombres" (p). Instituto de TecnologĂ­a Agroindustrial del Noroeste Argentino; ArgentinaFil: Sword, Gregory A.. Texas A&M University; Estados UnidosFil: Tessnow, Ashley E.. Texas A&M University; Estados UnidosFil: Viteri Dillon, Diego. Universidad de Puerto Rico; Puerto RicoFil: Linares Ramirez, Angela M.. Universidad de Puerto Rico; Puerto RicoFil: Akutse, Komivi S.. International Centre Of Insect Physiology And Ecology; KeniaFil: Schmidt Jeffris, Rebecca. United States Department Of Agriculture. Center For Medical Agric And Vet Entomology; Estados UnidosFil: Huang, Fangneng. State University of Louisiana; Estados UnidosFil: Reisig, Dominic. North Carolina State University; Estados UnidosFil: Emrich, Scott J.. University of Tennessee; Estados UnidosFil: Jurat Fuentes, Juan Luis. University of Tennessee; Estados Unido

    L’insediamento a bifacciali di Guado San Nicola (Monteroduni, Molise, Italia)

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    La monografia rappresenta un compendio di lavori specialistici sul sito paleolitico di Guado San Nicola a Monteroduni (Molise, Italia), oggetto di ricerche sistematiche ed indagini interdisciplinari inaugurate nell’area a partire dal 2000 dall'Università degli Studi di Ferrara. Il sito, ascrivibile al MIS 10/11, costituisce un tassello importante nell’ambito della ricostruzione del quadro del popolamento umano della penisola italiana e dell’intero bacino del Mediterraneo, alla luce delle considerazioni crono-stratigrafiche, della ricchezza della documentazione e della presenza di elementi innovativi dal punto di vista culturale quali la padronanza del metodo Levallois e l’uso di percussori in palchi di cervo

    Low prevalence of renal, cardiac, pulmonary, and neurological extra-articular clinical manifestations in spondyloarthritis: analysis of the Brazilian Registry of Spondyloarthritis

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    OBJECTIVE: To describe the extra-articular manifestations (cardiac, renal, pulmonary, and neurological), usually not related to spondyloarthritis (SpA), in a large cohort of Brazilian patients. MATERIALS AND METHODS: This retrospective study analyzed 1,472 patients diagnosed with SpA and cared for at 29 health care centers distributed in the five major geographic regions in the country, participating in the Brazilian Registry of Spondyloarthritis (BRS). All patients were assessed for the prevalence of major extra-articular manifestations (cardiac, renal, pulmonary, and neurological), classified according to the diagnosis [ankylosing spondylitis (AS), psoriatic arthritis (PsA), reactive arthritis (ReA), arthritis associated with inflammatory bowel disease (IBD), undifferentiated spondyloarthritis (uSpA), and juvenile SpA], and according to the clinical presentation (axial, peripheral, mixed, and enthesitis). RESULTS: Of the patients with SpA assessed, 963 had AS, 271 PsA, 49 ReA, 48 arthritis associated with IBD, 98 uSpA, and 43 juvenile SpA. Cardiac involvement was reported in 44 patients (3.0%), pulmonary involvement in 19 (1.3%), renal involvement in 17 (1.2%), and neurological involvement in 13 patients (0.9%). Most patients with visceral involvement had AS or PsA, and the mixed (axial + peripheral) and/or predominantly axial clinical form. CONCLUSION: Cardiac, renal, pulmonary, and neurological extra-articular manifestations are quite infrequent in SpA, ranging from 0.9% to 3% in this large Brazilian cohort, and affected predominantly patients with AS and PsA.OBJETIVO: Descrever as manifestaçÔes extra-articulares (cardĂ­acas, renais, pulmonares e neurolĂłgicas) geralmente nĂŁo relacionadas Ă s espondiloartrites (EpA) em uma grande coorte de pacientes brasileiros. MÉTODOS: Este estudo retrospectivo analisou 1.472 pacientes com o diagnĂłstico de EpA atendidos em 29 centros distribuĂ­dos pelas cinco principais regiĂ”es geogrĂĄficas do Brasil, integrantes do Registro Brasileiro de Espondiloartrites. Todos os pacientes foram avaliados para a prevalĂȘncia das principais manifestaçÔes extra-articulares (cardĂ­acas, renais, pulmonares e neurolĂłgicas), divididas por diagnĂłstico [espondilite anquilosante (EA), artrite psoriĂĄsica (AP), artrite reativa (ARe), artrite associada a doença inflamatĂłria intestinal (DII), EpA indiferenciada (EI) e EpA juvenil] e por forma clĂ­nica (axial, perifĂ©rica, mista e entesĂ­tica). RESULTADOS: Dentre os pacientes avaliados com EpA, 963 apresentavam EA, 271 AP, 49 ARe, 48 artrite associada a DII, 98 EI e 43 EpA juvenil. Acometimento cardĂ­aco foi observado em 44 pacientes (3,0%), seguido por acometimento pulmonar em 19 (1,3%), renal em 17 (1,2%) e neurolĂłgico em 13 pacientes (0,9%). A maioria dos casos de acometimento visceral ocorreu nos pacientes com EA ou AP e naqueles com forma clĂ­nica mista (axial e perifĂ©rica) e/ou predominantemente axial. CONCLUSÃO: As manifestaçÔes extra-articulares cardĂ­acas, renais, pulmonares e neurolĂłgicas sĂŁo muito pouco frequentes nas EpA, variando de 0,9%-3% nesta grande coorte brasileira, estando mais associadas a EA e AP.37938

    DNA methylation patterns identify subgroups of pancreatic neuroendocrine tumors with clinical association

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    Here we report the DNA methylation profile of 84 sporadic pancreatic neuroendocrine tumors (PanNETs) with associated clinical and genomic information. We identified three subgroups of PanNETs, termed T1, T2 and T3, with distinct patterns of methylation. The T1 subgroup was enriched for functional tumors and ATRX, DAXX and MEN1 wild-type genotypes. The T2 subgroup contained tumors with mutations in ATRX, DAXX and MEN1 and recurrent patterns of chromosomal losses in half of the genome with no association between regions with recurrent loss and methylation levels. T2 tumors were larger and had lower methylation in the MGMT gene body, which showed positive correlation with gene expression. The T3 subgroup harboured mutations in MEN1 with recurrent loss of chromosome 11, was enriched for grade G1 tumors and showed histological parameters associated with better prognosis. Our results suggest a role for methylation in both driving tumorigenesis and potentially stratifying prognosis in PanNETs
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