The Saltol QTL-localized transcription factor OsGATA8 plays an important role in stress tolerance and seed development in Arabidopsis and rice

A multi-stress inducible, Saltol-QTL localized transcription factor OsGATA8 promotes leaf greening, photosynthetic efficiency, ion homeostasis, seed size, and grain yield, and is essential for abiotic stress tolerance in rice

Elucidating the Response of Crop Plants towards Individual, Combined and Sequentially Occurring Abiotic Stresses

In nature, plants are exposed to an ever-changing environment with increasing frequencies of multiple abiotic stresses. These abiotic stresses act either in combination or sequentially, thereby driving vegetation dynamics and limiting plant growth and productivity worldwide. Plants’ responses against these combined and sequential stresses clearly differ from that triggered by an individual stress. Until now, experimental studies were mainly focused on plant responses to individual stress, but have overlooked the complex stress response generated in plants against combined or sequential abiotic stresses, as well as their interaction with each other. However, recent studies have demonstrated that the combined and sequential abiotic stresses overlap with respect to the central nodes of their interacting signaling pathways, and their impact cannot be modelled by swimming in an individual extreme event. Taken together, deciphering the regulatory networks operative between various abiotic stresses in agronomically important crops will contribute towards designing strategies for the development of plants with tolerance to multiple stress combinations. This review provides a brief overview of the recent developments in the interactive effects of combined and sequentially occurring stresses on crop plants. We believe that this study may improve our understanding of the molecular and physiological mechanisms in untangling the combined stress tolerance in plants, and may also provide a promising venue for agronomists, physiologists, as well as molecular biologists

Isolation of total ribonucleic acid from fresh and frozen-thawed boar semen and its relevance in transcriptome studies

The main objective of this study was to isolate high-quality total ribonucleic acid (RNA) from raw fresh semen and frozen-thawed boar semen, using a protocol comprising the conventional TRIzol assay and a membrane-based technique, the PureLink RNA mini kit. Bioanalyzer profile revealed that the sperm RNA size distributions comprised mainly intact RNA ranging from 1500 to 1800 bp, without any detectable residual genomic deoxyribonucleic acid (DNA) or 28S ribosomal RNA (rRNA). Spectrophotometric quantifications of the total RNA yielded 1.64 to 2.44 μg/106 spermatozoa, irrespective of the sperm source. The TRIzol/PureLink protocol allowed the isolation of high-quality intact RNA from boar spermatozoa, which is required for transcriptome analysis on high-throughput RNA-sequencing (RNA-Seq) data. Such an approach is relevant to identifying sperm messenger RNA (mRNA transcripts) that are associated with boar semen freezability.Keywords: cryopreservation, RNA-Seq, semen qualit

An improved protocol for efficient transformation and regeneration of diverse indica rice cultivars

<p>Abstract</p> <p>Background</p> <p>Rice genome sequencing projects have generated remarkable amount of information about genes and genome architecture having tremendous potential to be utilized in both basic and applied research. Success in transgenics is paving the way for preparing a road map of functional genomics which is expected to correlate action of a gene to a trait in cellular and organismal context. However, the lack of a simple and efficient method for transformation and regeneration is a major constraint for such studies in this important cereal crop.</p> <p>Results</p> <p>In the present study, we have developed an easy, rapid and highly efficient transformation and regeneration protocol using mature seeds as explants and found its successful applicability to a choice of elite indica rice genotypes. We have optimized various steps of transformation and standardized different components of the regeneration medium including growth hormones and the gelling agent. The modified regeneration medium triggers production of large number of shoots from smaller number of calli and promotes their faster growth, hence significantly advantageous over the existing protocols where the regeneration step requires maximum time. Using this protocol, significantly higher transformation efficiency (up to 46%) and regeneration frequency (up to 92% for the untransformed calli and 59% for the transformed calli) were achieved for the four tested cultivars. We have used this protocol to produce hundreds of independent transgenic lines of different indica rice genotypes. Upon maturity, these transgenic lines were fertile thereby indicating that faster regeneration during tissue culture did not affect their reproductive potential.</p> <p>Conclusions</p> <p>This speedy, yet less labor-intensive, protocol overcomes major limitations associated with genetic manipulation in rice. Moreover, our protocol uses mature seeds as the explant, which can easily be obtained in quantity throughout the year and kept viable for a long time. Such an easy, efficient and generalized protocol has the potential to be a major tool for crop improvement and gene-function studies on the model monocot plant rice.</p

Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation

<p>Abstract</p> <p>Background</p> <p>In <it>Arabidopsis thaliana </it>(L.) Heynh and <it>Oryza sativa </it>L., a large number of genes encode proteins of unknown functions, whose characterization still remains one of the major challenges. With an aim to characterize these unknown proteins having defined features (PDFs) in plants, we have chosen to work on proteins having a cystathionine β-synthase (CBS) domain. CBS domain as such has no defined function(s) but plays a regulatory role for many enzymes and thus helps in maintaining the intracellular redox balance. Its function as sensor of cellular energy has also been widely suggested.</p> <p>Results</p> <p>Our analysis has identified 34 CBS domain containing proteins (CDCPs) in <it>Arabidopsis </it>and 59 in <it>Oryza</it>. In most of these proteins, CBS domain coexists with other functional domain(s), which may indicate towards their probable functions. In order to investigate the role(s) of these CDCPs, we have carried out their detailed analysis in whole genomes of <it>Arabidopsis </it>and <it>Oryza</it>, including their classification, nomenclature, sequence analysis, domain analysis, chromosomal locations, phylogenetic relationships and their expression patterns using public databases (MPSS database and microarray data). We have found that the transcript levels of some members of this family are altered in response to various stresses such as salinity, drought, cold, high temperature, UV, wounding and genotoxic stress, in both root and shoot tissues. This data would be helpful in exploring the so far obscure functions of CBS domain and CBS domain-containing proteins in plant stress responses.</p> <p>Conclusion</p> <p>We have identified, classified and suggested the nomenclature of CDCPs in <it>Arabidopsis </it>and <it>Oryza</it>. A comprehensive analysis of expression patterns for CDCPs using the already existing transcriptome profiles and MPSS database reveals that a few CDCPs may have an important role in stress response/tolerance and development in plants, which needs to be validated further through functional genomics.</p

Gaining Acceptance of Novel Plant Breeding Technologies

Ensuring the sustainability of agriculture under climate change has led to a surge in alternative strategies for crop improvement. Advances in integrated crop breeding, social acceptance, and farm-level adoption are crucial to address future challenges to food security. Societal acceptance can be slow when consumers do not see the need for innovation or immediate benefits. We consider how best to address the issue of social licence and harmonised governance for novel gene technologies in plant breeding. In addition, we highlight optimised breeding strategies that will enable long-term genetic gains to be achieved. Promoted by harmonised global policy change, innovative plant breeding can realise high and sustainable productivity together with enhanced nutritional traits

Sperm DNA damage in relation to lipid peroxidation following freezing-thawing of boar semen

This study investigated the relationships between lipid peroxidation (LPO) and sperm DNA damage following freezing-thawing of boar semen in different extenders. The comet assay was used to measure the extent of sperm DNA damage in a cryoprotectant-free extender or in cryoprotectant-based extenders after single and repeated freezing and thawing. As well as an analysis of sperm motion characteristics, mitochondrial function, membrane integrity, and lipid peroxidation (LPO) were assessed simultaneously with the measurements of sperm DNA damage. Consistent positive significant correlations were found between sperm DNA damage and LPO after freezing-thawing. Comet assay measurements showed that cryo-induced sperm DNA damage was more marked in the cryoprotectant-free extender, irrespective of freezing cycle. The frequency of sperm cells with damaged DNA increased with repeated freezing and thawing in the cryoprotectant-based extenders. Except for sperm DNA damage, there were no consistent associations between post-thaw sperm LPO and sperm quality characteristics. It could be suggested that the increased LPO of membrane phospholipids is associated with higher susceptibility of boar spermatozoa to cryo-induced DNA damage.Keywords: Comet assay measurements, cryopreservation, extenders, spermatozo

Generation and Measurement of Non Equilibrium Spin Currents in Two Terminal Systems

Generation and measurement of non-equilibrium spin current in two probe configuration is discussed. It is argued and shown that spin current can be generated in two terminal non-magnetic system. Further it is shown that these spin currents can be measured via conductance in two probe configuration when the detector probe is ferromagnetic.Comment: 4 pages, 5 figure

Persistent currents in coupled mesoscopic rings

We have analysed the nature of persistent currents in open coupled mesoscopic rings. Our system is comprised of two ideal loops connected to an electron reservoir. We have obtained analytical expressions for the persistent current densities in two rings in the presence of a magnetic field. We show that the known even-odd parity effects in isolated single loops have to be generalised for the case of coupled rings. We also show that when the two rings have unequal circumferences, it is possible to observe opposite currents (diamagnetic or paramagnetic) in the two rings for a given Fermi level.Comment: Submitted to PRB. 9 figures availabel on reques

DPS1 regulates cuticle development and leaf senescence in rice

AbstractLeaves are the primary food‐producing organs for a plant that carry out photosynthesis and contribute to biomass and grain yield. Leaf senescence is a developmentally regulated physiological process but early leaf senescence is known to negatively affect plant yield. The cuticle is an outer waxy protective layer on the leaf surface which protects plants from pathogens attack as well as dehydration. Our understanding of the molecular mechanisms underlying cuticle development and leaf senescence is still immature. The present study reports the role of the DEGENERATED PANICLE AND PARTIAL STERILITY 1 (DPS1) gene encoding a cystathionine β‐synthase (CBS) domain‐containing protein in cuticle development and leaf senescence in rice. The dps1 loss‐of‐function mutant showed leaf senescence phenotype with twisted leaves, significantly reduced chlorophyll content and degenerated chloroplasts characterized by a reduced number of starch granules and an abundance of osmiophilic bodies. Furthermore, dps1 leaves displayed defective cuticle development, reduced wax and cutin compounds, and lower relative water content as compared with wild type. Physiological assays showed significantly higher accumulation of reactive oxygen species (ROS) accompanied by enhanced DNA fragmentation in dps1 leaves, which could be associated with chloroplast degeneration and defective cuticle development. Transcriptome analysis revealed altered expression of several critical genes related to photosynthesis and wax/cutin pathway. This study revealed a crucial role of DPS1 in regulating leaf cuticle development and senescence by affecting the expression of several genes. Thus, a moderate expression of DPS1 is necessary for better plant growth and productivity