Tidally Induced Offset Disks in Magellanic Spiral Galaxies

Magellanic spiral galaxies are a class of one-armed systems that often exhibit an offset stellar bar, and are rarely found around massive spiral galaxies. Using a set of N-body and hydrodynamic simulations we consider a dwarf-dwarf galaxy interaction as the driving mechanism for the formation of this peculiar class of systems. We investigate here the relation between the dynamical, stellar and gaseous disk center and the bar. In all our simulations the bar center always coincides with the dynamical center, while the stellar disk becomes highly asymmetric during the encounter causing the photometric center of the Magellanic galaxy disk to become mismatched with both the bar and the dynamical center. The disk asymmetries persist for almost 2 Gyrs, the time that it takes for the disk to be re-centered with the bar, and well after the companion has passed. This explains the nature of the offset bar found in many Magellanic-type galaxies, including the Large Magellanic Cloud (LMC) and NGC 3906. In particular, these results, once applied to the LMC, suggest that the dynamical center should reside in the bar center instead of the HI center as previously assumed, pointing to a variation in the current estimate of the north component of the LMC proper motion.Comment: 12 pages, 8 figures, corrected for referee comment

Evolution of the Kdo2-lipid A biosynthesis in bacteria

<p>Abstract</p> <p>Background</p> <p>Lipid A is the highly immunoreactive endotoxic center of lipopolysaccharide (LPS). It anchors the LPS into the outer membrane of most Gram-negative bacteria. Lipid A can be recognized by animal cells, triggers defense-related responses, and causes Gram-negative sepsis. The biosynthesis of Kdo₂-lipid A, the LPS substructure, involves with nine enzymatic steps.</p> <p>Results</p> <p>In order to elucidate the evolutionary pathway of Kdo₂-lipid A biosynthesis, we examined the distribution of genes encoding the nine enzymes across bacteria. We found that not all Gram-negative bacteria have all nine enzymes. Some Gram-negative bacteria have no genes encoding these enzymes and others have genes only for the first four enzymes (LpxA, LpxC, LpxD, and LpxB). Among the nine enzymes, five appeared to have arisen from three independent gene duplication events. Two of such events happened within the Proteobacteria lineage, followed by functional specialization of the duplicated genes and pathway optimization in these bacteria.</p> <p>Conclusions</p> <p>The nine-enzyme pathway, which was established based on the studies mainly in <it>Escherichia coli </it>K12, appears to be the most derived and optimized form. It is found only in <it>E. coli </it>and related Proteobacteria. Simpler and probably less efficient pathways are found in other bacterial groups, with Kdo₂-lipid A variants as the likely end products. The Kdo₂-lipid A biosynthetic pathway exemplifies extremely plastic evolution of bacterial genomes, especially those of Proteobacteria, and how these mainly pathogenic bacteria have adapted to their environment.</p

Ontology-based Navigation of Bibliographic Metadata

This paper describes the work done within the Food and Agriculture Organization of the United Nations (FAO) on providing an ontology-based navigation for the Food, Nutrition and Agriculture (FNA) Journal. The aim of the revised navigation was to provide more efficient and effective browsing of the Food and Nutrition Publications using a knowledge model to guide the user with concepts and relationships relevant to a specific subject area. With this approach, data from two different bibliographical databases was merged, unified and presented to the user with improved services. A preliminary metadata merge was needed to combine all the information into one system in order to produce a metadata-ontology. Resource Description Framework Schema (RDFS) was chosen to exploit semantic relationships, e.g. the possibilities of browsing the data in different ways (by keywords, categories, authors, etc.), and the creation of a multilingual concept-based advanced search

The Lyman Alpha Reference Sample. VIII. Characterizing Lyman-Alpha Scattering in Nearby Galaxies

We examine the dust geometry and Ly{\alpha} scattering in the galaxies of the Lyman Alpha Reference Sample (LARS), a set of 14 nearby (0.02 < $z$ < 0.2) Ly{\alpha} emitting and starbursting systems with Hubble Space Telescope Ly{\alpha}, H{\alpha}, and H{\beta} imaging. We find that the global dust properties determined by line ratios are consistent with other studies, with some of the LARS galaxies exhibiting clumpy dust media while others of them show significantly lower Ly{\alpha} emission compared to their Balmer decrement. With the LARS imaging, we present Ly{\alpha}/H{\alpha} and H{\alpha}/H{\beta} maps with spatial resolutions as low as $\sim$ 40 pc, and use these data to show that in most galaxies, the dust geometry is best modeled by three distinct regions: a central core where dust acts as a screen, an annulus where dust is distributed in clumps, and an outer envelope where Ly{\alpha} photons only scatter. We show that the dust that affects the escape of Ly{\alpha} is more restricted to the galaxies' central regions, while the larger Ly{\alpha} halos are generated by scattering at large radii. We present an empirical modeling technique to quantify how much Ly{\alpha} scatters in the halo, and find that this "characteristic" scattering distance correlates with the measured size of the Ly{\alpha} halo. We note that there exists a slight anti-correlation between the scattering distance of Ly{\alpha} and global dust properties.Comment: 32 pages, 51 figures, accepted to Ap

The Lyman Alpha Reference Sample: III. Properties of the Neutral ISM from GBT and VLA Observations

We present new H I imaging and spectroscopy of the 14 UV-selected star-forming galaxies in the Lyman Alpha Reference Sample (LARS), aimed for a detailed study of the processes governing the production, propagation, and escape of Ly$\alpha$ photons. New H I spectroscopy, obtained with the 100m Green Bank Telescope (GBT), robustly detects the H I spectral line in 11 of the 14 observed LARS galaxies (although the profiles of two of the galaxies are likely confused by other sources within the GBT beam); the three highest redshift galaxies are not detected at our current sensitivity limits. The GBT profiles are used to derive fundamental H I line properties of the LARS galaxies. We also present new pilot H I spectral line imaging of 5 of the LARS galaxies obtained with the Karl G. Jansky Very Large Array (VLA). This imaging localizes the H I gas and provides a measurement of the total H I mass in each galaxy. In one system, LARS 03 (UGC 8335 or Arp 238), VLA observations reveal an enormous tidal structure that extends over 160 kpc from the main interacting systems and that contains $>$10$^9$ M$_{\odot}$ of H I. We compare various H I properties with global Ly$\alpha$ quantities derived from HST measurements. The measurements of the Ly$\alpha$ escape fraction are coupled with the new direct measurements of H I mass and significantly disturbed H I velocities. Our robustly detected sample reveals that both total H I mass and linewidth are tentatively correlated with key Ly$\alpha$ tracers. Further, on global scales, these data support a complex coupling between Ly$\alpha$ propagation and the H I properties of the surrounding medium.Comment: Preprint form, 16 figures, accepted in Ap

The Lyman alpha reference sample. VII. Spatially resolved Hα\alpha kinematics

We present integral field spectroscopic observations with the Potsdam Multi Aperture Spectrophotometer of all 14 galaxies in the $z\sim 0.1$ Lyman Alpha Reference Sample (LARS). We produce 2D line of sight velocity maps and velocity dispersion maps from the Balmer $\alpha$ (H$\alpha$) emission in our data cubes. These maps trace the spectral and spatial properties of the LARS galaxies' intrinsic Ly$\alpha$ radiation field. We show our kinematic maps spatially registered onto the Hubble Space Telescope H$\alpha$ and Lyman $\alpha$ (Ly$\alpha$) images. Only for individual galaxies a causal connection between spatially resolved H$\alpha$ kinematics and Ly$\alpha$ photometry can be conjectured. However, no general trend can be established for the whole sample. Furthermore, we compute non-parametric global kinematical statistics -- intrinsic velocity dispersion $\sigma_0$, shearing velocity $v_\mathrm{shear}$, and the $v_\mathrm{shear}/\sigma_0$ ratio -- from our kinematic maps. In general LARS galaxies are characterised by high intrinsic velocity dispersions (54\,km\,s$^{-1}$ median) and low shearing velocities (65\,km\,s$^{-1}$ median). $v_\mathrm{shear}/\sigma_0$ values range from 0.5 to 3.2 with an average of 1.5. Noteworthy, five galaxies of the sample are dispersion dominated systems with $v_\mathrm{shear}/\sigma_0 <1$ and are thus kinematically similar to turbulent star forming galaxies seen at high redshift. When linking our kinematical statistics to the global LARS Ly$\alpha$ properties, we find that dispersion dominated systems show higher Ly$\alpha$ equivalent widths and higher Ly$\alpha$ escape fractions than systems with $v_\mathrm{shear}/\sigma_0 > 1$. Our result indicates that turbulence in actively star-forming systems is causally connected to interstellar medium conditions that favour an escape of Ly$\alpha$ radiation.Comment: 26 pages, 15 figures, accepted for publication in A&

The Neutral Gas Dynamics of the Nearby Magellanic Irregular Galaxy UGCA 105

We present new low-resolution HI spectral line imaging, obtained with the Karl G. Jansky Very Large Array (JVLA), of the star-forming Magellanic irregular galaxy UGCA 105. This nearby (D = 3.39+/-0.25 Mpc), low mass [M_HI=(4.3+/-0.5)x10^8 Solar masses] system harbors a large neutral gas disk (HI radius ~7.2 kpc at the N_HI=10^20 cm^-2 level) that is roughly twice as large as the stellar disk at the B-band R_25 isophote. We explore the neutral gas dynamics of this system, fitting tilted ring models in order to extract a well-sampled rotation curve. The rotation velocity rises in the inner disk, flattens at 72+/-3 km/s, and remains flat to the last measured point of the disk (~7.5 kpc). The dynamical mass of UGCA 105 at this outermost point, (9+/-2)x10^9 Solar masses, is ~10 times as large as the luminous baryonic components (neutral atomic gas and stars). The proximity and favorable inclination (55 degrees) of UGCA 105 make it a promising target for high-resolution studies of both star formation and rotational dynamics in a nearby low-mass galaxy.Comment: The Astronomical Journal, in pres