78 research outputs found
Contemporary socio-political approaches to poverty alleviation in developing countries
Савремено друштво је обележено периодом вртоглаве иновације, подржане
глобализацијом и технолошким развојем, који омогућавају демократизацију и
активно учешће становништва у свакодневним социјално-економским и
политичким процесима. Међутим, предности ових иновација нису доспеле до
свих слојева становништва, будући да је скоро једна петина светског
становништва остала заробљена у „зачараном кругу” сиромаштва из кога још увек
није пронађен пут изласка. Овај рад се бави анализом појаве и ефеката
сиромаштва у земљама у развоју, као и фактора који доприносе тој појави и
савременим методама које се употребљавају да се оно ублажи. Научни допринос
овог рада је у компаративној анализи савремених приступа планова и програма
ублажавању сиромаштва у земљама у развоју. Други важан допринос односи се на
закључке о могућности да се утврде дугорочна и одржива решења за третман
феномена сиромаштва кроз активно учешће сиромашних у тим процесима.
Рад почиње дефиницијом сиромаштва и анализом традиционалних
историјских приступа овој појави, у циљу одређивања фактора који доприносе
формирању и задржавању сиромаштва у земљама у развоју. Проучавањем
класичних приступа може се разумети и повод за дефинисање алтернативних
савремених приступа ублажавању сиромаштва. У раду се дефинишу и значајне
разлике у карактеру и интензитету сиромаштва између развијених и земаља у
развоју, са циљем објашњавања потребе за посебним приступима који су
прилагођени реалним условима тих земаља. Аутор одбацује дефиницију
сиромаштва као ендемске болести, уз аргумент да се сиромашни слојеви
становништва могу третирати као потенцијални фактори процеса ублажавања па
и елиминисања сиромаштва, сопственим ангажовањем за побољшање свог
социјално-економског положаја.
Након појмовног одређивања и разматрања нових теорија о сиромаштву,
аутор закључује да је дошло до реконцептуализације појма сиромаштва кроз
дубљу спознају о животима и потребама самих сиромашних категорија
становништва. Овакав приступ „од основе ка врху” омогућио је да се сиромашни
укључе у процесе дефинисања стратегија за ублажавање сиромаштва и помогао је
v
да се креирају нова решења која одговарају том сегменту становништва.
Преласком са пасивног ка активном учешћу, приступи ублажавању сиромаштва у
земљама у развоју бивају дефинисани концептом заједничке одговорности.
У анализи ефеката савремених приступа, аутор се концентрише на улогу
финансија у сиромаштву, односно на истраживање о тржишном приступу
финансијске инклузије и државном приступу условних новчаних трансфера.
Почевши од аргумента да је приступ финансијским услугама од великог значаја за
сиромашно становништво, аутор истражује ефикасност финансијске инклузије у
процесу ублажавања сиромаштва и детаљније анализира ефекат микрофинансија
на овај сегмент становништва. Преласком на анализу социјалне политике и
приступа од растућег значаја у свету, у раду се износи комплексна анализа
условних новчаних трансфера и њиховог ефекта на постизање краткорочних и
дугорочних резултата ублажавања сиромаштва, посебно у земљама у развоју.
Применом инстердисциплинарног приступа истраживању сиромаштва,
аутор повезује финансијску инклузију и условне новчане трансфере кроз студију
случаја у Колумбији и закључује да су блиско повезани, а да се њиховом
интеграцијом могу постићи још значајнији резултати. Кроз закључке емпиријског
истраживања у Јужној Америци и анализу примене иновативних приступа, аутор
указује на значај иновација и неопходност интердисциплинарног приступа и
инклузије у процесу ублажавања сиромаштва у свету. Технолошке иновације чине
савремено друштво ефикаснијим, продуктивнијим и богатијим, али могу имати
значајну улогу у процесу ублажавања сиромаштва. Уколико се процесом
привредног развоја не води рачуна о најсиромашнијим особама, тренд социјалне
неједнакости ће се наставити, а човечанство ће бити лишено могућности
коришћења потенцијалних благодети великог сегмента савременог друштваContemporary society is marked by a period of dizzying innovation, spurred on
by the phenomena of globalization and technological development, which have
supported democratization and the active participation of citizens in everyday
socioeconomic and political processes. However, these innovations have not reached
everyone, given that one fifth of the world's population remains trapped, with no
defined pathway out of the cycle of poverty.
This dissertation offers an analysis of the evolution and effects of poverty in
developing countries, as well as the factors contributing to this issue and the
contemporary approaches that have been used to alleviate poverty. The dissertation's
scientific contribution is its critical comparative analysis of contemporary approaches to
poverty alleviation plans and programs in developing countries. Additionally, it offers
conclusions that help define short-term and long-term sustainable solutions to poverty
alleviation through the active engagement of the poor.
The research begins with an analysis of the traditional historical approaches to
poverty and its associated definitions, with the goal of determining which factors
contribute to the formation and persistence of poverty in developing countries. Studying
the classical approaches, one is able to understand the need for defining alternative
contemporary approaches to poverty alleviation. The dissertation provides clarification
as to the specific differences in the character and intensity of poverty in developed and
developing countries, with the goal of demonstrating the need for targeted approaches,
adapted to the conditions of each country. The author rejects the notion that poverty is
an endemic problem, through the argument that the poor can be considered a potential
partner in alleviating and even eliminating poverty via their engagement in the gradual
improvement of their socioeconomic situation.
After defining the relevant terms and analyzing newer theories related to
poverty, such as the theory of human development, the author identifies a
reconceptualization of poverty, grounded in a much deeper understanding of the lives
and needs of the poor. This “bottom-up approach” has catalyzed the active participation
of the poor in co-defining strategies for poverty alleviation, and has helped create
approaches that fit the needs of this segment of the population. By transitioning from
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passive to active participation, contemporary socio-political approaches to poverty
alleviation in developing countries are defined through the concept of coresponsibility.
Analyzing the effects of these contemporary approaches, the author focuses on
the role that finance plays in poverty, by analyzing the market-based financial inclusion
approach and the government-led conditional cash transfer approach. Beginning with
the argument that access to financial services is of crucial importance to the poor, the
author analyzes the impact of financial inclusion on poverty alleviation processes, with
a special focus on the role of microfinance. Transitioning to an assessment of social
policy, the dissertation continues with a complex analysis of conditional cash transfers,
an approach that is gaining global popularity, and their ability to support short-term and
long-term poverty alleviation goals, particularly in the context of developing countries.
Applying an interdisciplinary approach to poverty research, the author connects
these two perspectives in a case study of the country of Colombia, concluding that
financial inclusion and conditional cash transfer programs are intricately connected, and
that their integration can lead to even greater impact. Through empirical research in
South America and analyses of the application of innovative approaches, the author
concludes by highlighting the importance of innovation, interdisciplinarity and
inclusion in the process of worldwide poverty alleviation. Technological innovation has
made contemporary society more efficient, connected and productive. However, if it
does not support the needs of the poorest segment of the population, the trend of
inequality will continue and mankind will have lost the opportunity to take advantage of
the significant contributions of this segment of the populatio
Representing IT Performance Management as Metamodel
Many empirical studies have shown that the business value from investment in IT projects can be greater than the one being currently achieved. Thus it calls for specific focus on IT governance in order to reach fusion between business and IT goals. Good IT performance management should enable the business and IT executives to understand how IT is contributing to the achievement of business goals. The paper addresses the issue of representing IT governance best practice frameworks as ontological metamodels. Special attention is dedicated to VAL IT framework, which represents a comprehensive framework to maximize business value from IT investments. The paper points out the necessity of analyzing, comparing and integrating IT governance frameworks in order to complement different knowledge and generate ontological metamodel of IT performance management. Scope ofour work is in the static aspect of the framework and as the metalanguage Extended Entity/Relationship model is used
Strukturna karakterizacija proteina zastupljenih u kasnoj fazi embriogeneze iz biljke Ramonda Serbica : Potencijalni inhibitor agregacije α‐ sinukleina
Ramonda serbica is an endemic and resurrection plant species that can survive
extreme dehydration even over months. Desiccation (loss of >95% of cellular water) leads to
protein denaturation, aggregation, and degradation and impairs membrane lipid fluidity, resulting in
loss of membrane integrity at the cellular level. The induction of late embryogenesis abundant
proteins (LEAPs) is considered an essential component of desiccation tolerance strategy in so-called
resurrection plants. This heterogeneous group of anhydrobiosis-related intrinsically
disordered proteins (IDPs) is characterized by high structural plasticity enabling them to interact
with various ligands and partners, including ion sequestration and stabilization of membranes and
enzymes during freezing or drying. the aim of our research is to assess the potential of selected
RsLEAPs to inhibit the aggregation of α-synuclein, paving the way for new therapeutic
strategies against neurodegenerative disorders, such as Parkinson’s disease.
Our new transcriptome database of R. serbica leaves allowed us to identify around 165
members of LEA protein family. Based on multiple sequence alignment, secondary structure
prediction and 3D structure modelling we classified identified LEAPs into six groups
(according to the Pfam database) and showed that more than 50% of identified LEAPs
exhibited a high propensity to form α-helices. As predicted by several bioinformatic tools,
more than 70% of identified LEAPs were found to be highly disordered. By using molecular
dynamic simulations, we identified the most favourable conformations of representative
LEAPs and showed the loss of the secondary, α-helical structure in water, in contrast to
globular proteins.
Structural characterization of LEAPs is a key to understand their function and
regulation of their intrinsic structural disorder-to-order transition during desiccation. These
findings will promote transformative advancements in various fields, such as the
development of new strategies in neurodegenerative disorders, cell preservation technology
and the improvement of crop drought tolerance.Ramonda serbica endemska vrsta, i biljka vaskrsnica, sposobna da preživi u uslovima
ekstremne dehidratacije tokom perioda dužeg od mesec dana. Desikacija (gubitak preko 95
% vode u ćeliji) dovodi do denaturacije, agregacije i degradacije proteina, i utiče na fluidnost
membrana, što finalno dovodi do gubitka integriteta ćelije. Prisustvo proteina zastupljenih u
kasnoj fazi embriogeneze (late embryogenesis abundant proteins – LEAPs) se smatra esencijalnim
delom strategije tolerancije na desikaciju kod vaskrsnica. Ovu heterogenu grupu prirodno neuređenih
proteina, povezanih sa anhidrobiozom, odlikuje visoka strukturna plastičnost koja im omogućava
interakciju sa brojnim ligandima i partnerima. LEA proteini su uključeni u heliranje jona, stabilizaciju
membrana i enzima tokom zamrzavanja ili suše. Cilj našeg istraživanja je procena potencijala
izabranog LEA proteina iz ramonde da inhibira agregaciju α-sinukleina, otvarajući put ka razvoju
novih terapija za lečenje neurodegenerativnih poremećaja poput Parkinskonove bolesti.
Analiziranjem transkriptoma listova R. serbica i formiranjem baze podataka
identifikovano je oko 165 proteina koji pripadaju LEA proteinskoj familiji. Na osnovu
višestrukog poravnjanja aminokiselinskih sekvenci, predviđanja sekundarne strukture i 3D
strukturnog modelinga, identifikovani LEA proteini su podeljeni u šest grupa (prema Pfam
bazi podataka) i pokazano je sa velikom verovatnoćom da je više od 50 % LEA proteina u
mogućnosti da formira α-helikse. Pomoću nekoliko bioinformatičkih alata predviđeno je da
više od 70 % identifikovanih LEA proteina formira visoko neuređenu strukturu. Korišćenjem
simulacije molekularne dinamike, identifikovane su najpovoljnije konformacije
reprezentativnih LEA proteina. Tom prilikom je kod LEA proteina uočen gubitak sekundarne
α-heliksne strukture u vodi, za razliku od globularnih proteina kada je ova struktura
favorizovana.
Strukturna karakterizacija LEA proteina je ključna za razumevanje njihove funkcije i
regulaciju njihovog prelaska iz neuređene u uređenu konformaciju tokom desikacije. Ova
saznanja bi trebalo da omoguće značajna napredovanja na različitim poljima, kao što je
razvoj novih strategija u borbi protiv neurodegenerativnih poremećaja, tehnologija čuvanja
zamrznutih ćelija, kao i na povećanje otpornosti useva na sušu
De Novo Transcriptome Sequencing of Ramonda serbica: Identification of Late Embryogenesis Abundant Proteins
An extreme loss of cellular water or desiccation (5-10% of relative water content) leads to protein denaturation, aggregation and degradation, and affects the fluidity of membrane lipids resulting in loss of membrane integrity [1]. The essential constituents of vegetative desiccation tolerance in so-called resurrection plants are late embryogenesis abundant proteins (LEAPs). This heterogeneous group of anhydrobiosis-related intrinsically disordered proteins forms mostly random conformation when fully hydrated, turning into compact α-helices during desiccation [2]. Based on in vitro studies, LEAPs can be involved in water binding, ion sequestration, stabilization of both membrane and enzymes during freezing or drying, while by forming intracellular proteinaceous condensates they increase structural integrity and intracellular viscosity of cells during desiccation.
Here, we identify 164 members of LEA gene family in endemic and relict resurrection species Ramonda serbica by integrating previously done de novo transcriptome and homologues protein motifs. Identified LEAPs were classification into six groups according to Protein family (PFAM) database and the most populated group was LEA4 containing 47% of total identified LEAPs. By using four secondary structure predictors, we showed that this group exhibited a high propensity to form amphipathic α-helices (81% of total sequence length is predicted to form α-helical structure). This implies that charged residues might be exposed to the solvent, while hydrophobic amino acids might interact with lipid bilayers or with other target proteins in the cell. In addition, as predicted by several bioinformatic tools, more than 70% of identified LEAPs were found to be highly disordered (~64%). Structural characterization of LEAPs is a key to understand their function and regulation of their intrinsic structural disorder-to-order transition during desiccation. These findings will promote transformative advancements in various fields, such as the development of new strategies in neurodegenerative disorders, cell preservation technology and the improvement of crop drought tolerance.Book of Abstracts; Belgrade BioInformatics Conference 2021, 21-25 June 2021, Vinča, Serbi
Characterization of outer membrane vesicles of plant growth promoting bacteria Paraburkholderia phytofirmans PsJN
Plant growth promoting bacteria (PGPB) are microorganisms present in plant
rhizosphere that stimulate plant growth, as well as prime plants against abiotic
and biotic stress. PGPB are also located in plant intercellular space and can directly
interfere with plant pathogens. Many different mechanisms of interaction
between plants and PGPB has been shown, but the interaction through outer
membrane vesicles (OMVs) has only been proposed. OMVs are membrane-enclosed
nanostructures produced by Gram-negative bacteria. Size of OMVs can
range from 20 to 300 nm, depending on the strain. In this research, we determined
optimal method for isolation of OMVs produced by Paraburkholderia
phytofirmans PsJN, characterized the size range of OMVs, their concentration
and origin. OMVs from PGPB PsJN have been isolated us\ing two methodological
approaches: 1) differential centrifugation, ultrafiltration, and purification
using Optiprep density gradient, and 2) OMV isolation by the commercial
ExoBacteria OMV Isolation Kit that uses an affinity-based column system. Size
and concentration of isolated OMVs were analyzed using Nanoparticle Tracking
Analysis (NTA). As the OMVs are derived from outer membranes of bacteria, their
origin has been proven using an essay for detection of lipopolysaccharides. In
addition, protein profiles of OMV from PsJN were visualized by SDS-PAGE. Comparing
different methods for isolation and purification of vesicles from PsJN we
concluded that for our PGPB strain the commercial ExoBacteria OMV Isolation
Kit provides the highest yield. Quantification of OMV using NTA of OMVs produced
by P. phytofirmans PsJN, isolated with the commercial kit, showed a mean
particle numeration of 4.05*109 particles/ml. Size of OMVs isolated from PsJN
ranged from 50 to 200 nm. Detection of lipopolysaccharides confirmed that
isolated vesicles originated from outer membranes of PsJN. These findings are
the important first step in our research of the role of OMVs in PGPB interaction
with plants.Book of abstract: ICGEB WORKSHOP; Trends in microbial solutions for sustainable agriculture, 13 – 15 September 2023. Belgrade, Serbi
Dehydrins in the service of protecting the DNA helix from the aspect of molecular dynamics (MD)
Drought stress is one of the greatest threats to global food security, posing a major challenge
to agriculture. Understanding the molecular mechanisms underlying desiccation tolerance
in resurrection plants like Ramonda serbica Panc., can provide valuable insights for improving
crop resilience. Dehydrins are intrinsically disordered proteins known to accumulate in these
plants in response to desiccation. Among several proposed physiological roles, it has been
suggested that dehydrins can protect DNA from damage during water shortage. Here, we
have characterised dehydrins from R. serbica, selected a representative one and evaluated
its potential to interact with DNA.
Most of the R. serbica dehydrins were designated as hydrophilins (glycine content >6%;
GRAVY index <1). They exhibit a high disorder propensity, making them quite dynamic
in solution. Furthermore, they were predicted to localize in the nucleus. To examine the
potential interactions with DNA in silico, we have selected a representative, highly hydrophilic
dehydrin (Gravy index: –1.29) containing a high percentage of glycine (22.6%) and charged
amino acids (lysine, glutamate and aspartate). Its 3D structures were determined using the
Phyre 2 intensive modelling and AlphaFold.
The dehydrin-DNA complex was manually adjusted, following molecular dynamic simulation
(MDS) in both cases of hydration and desiccation. To simulate complete hydration, the DNAdehydrin
complex was solvated in a water box, with final dimensions of 100×69×82 Å,
neutralised with 0.15 M NaCl. The system underwent a 10,000-step energy minimization,
consecutive 1250 ps equilibration NVE (constant number of atoms, volume and energy)
heating from 10 K to 298 K and 100 ns NPT (constant number of atoms, pressure and
temperature) MD production at 1 bar, and 1 fs integration step. In all simulations, periodic
boundary conditions (PBC) were implemented and the CHARMM36 force field was used.
The obtained results revealed that selected dehydrin can interact with both minor and major
DNA grooves. The phosphate groups from the DNA molecule form salt bridges with the
positively charged lysines from polylysine, K-segment, contributing to the complex stability.
Overall, we have provided evidence for possible dehydrin-DNA interactions. However, the
exact nature and significance of these interactions is still an area of active research in vitro.Book of abstract: 4th Belgrade Bioinformatics Conference, June 19-23, 202
LEA4 proteins: How disordered are they?
Abstract book: 1st ML4NGP meeting on machine learning and non-globular proteins, July 5-7, 2023, Bratislava, Slovaki
De Novo Transcriptome Sequencing of Ramonda serbica : Identification of Late Embryogenesis Abundant Proteins
An extreme loss of cellular water or desiccation (5-10% of relative water content) leads to protein denaturation, aggregation and degradation, and affects the fluidity of membrane lipids resulting in loss of membrane integrity [1]. The essential constituents of vegetative desiccation tolerance in so-called resurrection plants are late embryogenesis abundant proteins (LEAPs). This heterogeneous group of anhydrobiosis-related intrinsically disordered proteins forms mostly random conformation when fully hydrated, turning into compact α-helices during desiccation [2]. Based on in vitro studies, LEAPs can be involved in water binding, ion sequestration, stabilization of both membrane and enzymes during freezing or drying, while by forming intracellular proteinaceous condensates they increase structural integrity and intracellular viscosity of cells during desiccation.
Here, we identify 164 members of LEA gene family in endemic and relict resurrection species Ramonda serbica by integrating previously done de novo transcriptome and homologues protein motifs. Identified LEAPs were classification into six groups according to Protein family (PFAM) database and the most populated group was LEA4 containing 47% of total identified LEAPs. By using four secondary structure predictors, we showed that this group exhibited a high propensity to form amphipathic α-helices (81% of total sequence length is predicted to form α-helical structure). This implies that charged residues might be exposed to the solvent, while hydrophobic amino acids might interact with lipid bilayers or with other target proteins in the cell. In addition, as predicted by several bioinformatic tools, more than 70% of identified LEAPs were found to be highly disordered (~64%). Structural characterization of LEAPs is a key to understand their function and regulation of their intrinsic structural disorder-to-order transition during desiccation. These findings will promote transformative advancements in various fields, such as the development of new strategies in neurodegenerative disorders, cell preservation technology and the improvement of crop drought tolerance.Book of Abstracts; Belgrade BioInformatics Conference 2021, 21-25 June 2021, Vinča, Serbi
De Novo Transcriptome Sequencing of Ramonda serbica: Identification of the Candidate Genes Involved in the Desiccation Tolerance
Introduction: Ramonda serbica Panc. is a resurrection plant that can survive a long period of severe dehydrationdesiccation.
Desiccation induces cellular membrane integrity loss, protein aggregation, and denaturation, as well as
accelerated generation of reactive oxygen species. However, R. serbica can fully recover its metabolic functions
already one day upon watering [1].
Aim: to obtain more insight into the mechanisms of desiccation tolerance in R. serbica by differential de novo
transcriptomics of hydrated (HL) and desiccated leaves (DL)
Late embryogenesis abundant proteins: Structural characterisation and interaction with α-synuclein
Ressurection plants are extraordinary because of their ability to withstand long periods
without water, enter a state of anhydrobiosis, and fully recover upon water arrival.
Ramonda serbica is a relic and endemic species that belong to a very small group of
desiccation-tolerant plants in Europe. Underlying physiological, molecular and
morphological mechanisms that enable these plants to survive harsh environmental
conditions have been an appealing subject to many researchers. Most of the genes
responsible for this amazing ability are present in other plants, and this path of research
where those genes could be activated in crops is growing much more attention because of
the imminent crisis regarding food supplies in the near future. Key components involved in
the response to dehydration in R. serbica plants were analysed through a comprehensive
transcriptomic, proteomic, metabolite and photosynthetic study. Late embryogenesis
abundant proteins play a significant role in the complex defence processes involved in
desiccation tolerance. Defining physicochemical characteristics and specific physiological
functions of late embryogenesis abundant proteins – LEAPs may lead to their applicability
in other areas of research
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