14 research outputs found
New Paradigms – Interactionist Perspectives Of Human Behaviour In Organisations And Management
The study analyzes interactionist perspectives, combining different approaches, models, and theories about understanding the multi-aspect, multi-factor and holistic (comprehensive) nature of human behaviour in organisations and management. It also suggests baseline theses about: substantiation of complex research approaches; intersection of paradigmatic lines of different behaviour sciences, concepts, methodologies, and correlations which establish prerequisites for empirical and applied “translation” for acquiring new knowledge, values, and behaviour to encourage human development, strategic and global thinking, human capital and management of talents
System size and centrality dependence of the balance function in A+A collisions at sqrt[sNN]=17.2 GeV
Electric charge correlations were studied for p+p, C+C, Si+Si, and centrality selected Pb+Pb collisions at sqrt[sNN]=17.2 GeV with the NA49 large acceptance detector at the CERN SPS. In particular, long-range pseudorapidity correlations of oppositely charged particles were measured using the balance function method. The width of the balance function decreases with increasing system size and centrality of the reactions. This decrease could be related to an increasing delay of hadronization in central Pb+Pb collisions
Anwendungen maschinellen Lernens auf Chemotaxonomie und Ligand-basiertes virtuelles Screening
This work demonstrated the applicability of different machine learning techniques for extracting knowledge from chemical databases of different size. Two different fields – chemotaxonomy and ligand-based virtual screening were studied. The former demonstrated how a relatively small chemical data set can be coupled with different machine learning techniques in a way, which allows us to better our understanding of the relationships between plants’ secondary metabolism and their taxonomic classification. The ligand-based virtual screening demonstrated how the large amount of chemical data stored across different large chemical databases can be used in a knowledge-driven way for the discovery of new potential drugs. Chapter 2 presented the application of different classification techniques to the assignment of sesquiterpene lactones – important secondary metabolites in the plant family Asteraceae – to the Asteraceae tribe from which they have been isolated. The performance of different machine learning techniques was investigated. Good agreement with the taxonomic division proposed by Bremer was obtained. In addition, the problem of the applicability domain of the built models was investigated and some practical guidance was given. Chapter 3 extended the study presented in Chapter 2. The simultaneous occurrence of secondary metabolites in different taxa was taken into account. A machine learning area, known as multi-labeled classification, was introduced in an attempt to model the reality as closely as possible. With this approach interesting relationships between the studied Asteraceae tribes were discovered. In addition, the practical application of the built classification models to targeted collection of plants with the aim of finding natural products with desired properties was shown. Chapter 4 demonstrated how machine learning techniques can help in the navigation of large chemical spaces. A new approach to ligand-based similarity searching based on a machine learning technique known as novelty detection was described. Its applicability for the knowledge-driven selection of chemical compounds with potential biological activity has been demonstrated comparative to the most common ligand-based virtual screening approach – similarity searching. Chapter 5 extended the work described in Chapter 4 to more concrete practical scenarios. Four such scenarios: prioritizing compounds for a subsequent high-throughput screening experiment; selecting compounds for a subsequent lead-optimization, assessing the probability that a given structure will exhibit a particular biological activity, and the identification of the most active structure were examined. The applicability of different ligand-based virtual screening methods and chemical structure representations in each scenario was tested. Different measures for the success of the virtual screening experiment in each scenario were presented and discussed. The optimal size of the training set, the difference in the chemical spaces covered by two large databases of biologically active compounds, the bias introduced by the training set selection, the differences in the compounds recovered by different methods or/and descriptors were discussed and the best method-descriptor combination was identified for each scenario. The findings of this work can be used as guidance for future studies, including investigations in both chemotaxonomy and ligand-based virtual screening, as well as in other chemistry related areas. Concerning chemotaxonomy, a comparative study using the existing different taxonomic divisions of Asteraceae will no doubt discover new interesting relationships between Asteraceae plant species. With regards to ligand-based virtual screening the investigation of other novelty detection techniques and a study, which accounts for the conformational flexibility of the ligands, will be valuable. On the other hand, the definition of the applicability domain of a machine learning model, discussed in Chapter 2, is of benefit for any machine learning method which is used with predictive purposes. The multi-labeled classification, presented in Chapter 3, may benefit other chemoinformatics fields – like, for example, predicting multi-target drugs. The novelty detection technique presented and discussed in Chapter 4 and Chapter 5 offers an alternative for any case where information about only one of the possible states of a given (chemical) system is known. As such, it may help in discovering knowledge from data in various situations where the classic classification algorithms are not applicable. The studies presented in this work have shown the applicability of machine learning techniques to different chemistry related problems. We have demonstrated how, with the help of different machine learning techniques, knowledge can be gathered from both small and large chemical databases. This knowledge is of great value in the modern, data-rich world.Die hier vorliegende Arbeit zeigt die Eignung unterschiedlicher Techniken maschinellen Lernens zur Extraktion von Wissen aus chemischen Datenbanken verschiedener Größe. Zwei unterschiedliche Gebiete – Chemotaxonomie und ligand-basiertes virtuelles Screening wurden hierfür untersucht. Ersteres zeigt, wie ein verhältnismäßig kleiner chemischer Datensatz in Kombination mit unterschiedlichen Techniken des maschinellen Lernens dazu verwendet werden kann unser Verständnis über die Zusammenhänge des sekundären Metabolismus von Pflanzen und ihrer taxonomischen Klassifikation zu verbessern. Ligandbasiertes virtuelles Screening zeigt, wie umfangreiche Mengen chemischer Daten, die über verschiedene große, chemische Datenbanken verteilt sind mit einem wissensbasierten Ansatz zur Entdeckung neuer potentieller Medikamente genutzt werden können. Kapitel 2 demonstriert die Anwendung unterschiedlicher Klassifikationstechniken bei der Zuordnung von Sesquiterpenlaktonen – wichtige sekundäre Metabolite in der Pflanzenfamilie Asteraceae – zu dem Stamm der Asteraceae aus dem sie isoliert wurden. Die Effizienz verschiedener Klassifikationstechniken wurde untersucht. Hierbei konnte eine gute Übereinstimmung mit der von Bremer vorgeschlagenen taxonomischen Einteilung erreicht werden. Darüber hinaus wurden die Anwendungsbereiche der erstellten Modelle untersucht und es konnten einige praktische Anwendungshinweise gegeben werden. Kapitel 3 erweitert die in Kapitel 2 präsentierte Studie. Die gleichzeitige Anwesenheit sekundärer Metabolite in unterschiedlichen Taxa wurde berücksichtigt. Multi-labeled Klassifizierung wurde eingesetzt um die Realität so gut wie möglich zu reproduzieren. Mit diesem Ansatz konnten interessante Zusammenhängen zwischen den unterschiedlichen untersuchten Asteraceae Stämmen erkannt werden. Darüber hinaus wurde die praktische Anwendung des erstellten Klassifizierungsmodells anhand von gezielten Pflanzensammlungen gezeigt. Kapitel 4 zeigt wie die Techniken des maschinellen Lernens dazu genutzt werden können um sich in großen, chemischen Räumen zu orientieren. Ein neuer Ansatz zur ligand-basierten Ähnlichkeitssuche, der auf einer Technik des maschinellen Lernens beruht die auch unter dem Namen Neuheitserkennung (novelty detection) bekannt ist wurde erprobt. Die Leistungsfähigkeit der Neuheitserkennung zur wissensbasierten Suche chemischer Verbindungen mit potentieller biologischer Aktivität zeigte sich in einer vergleichende Studie mit der am häufigsten zum ligand-basierten virtuellen Screening eingesetzten Methode – der Ähnlichkeitssuche. In Kapitel 5 wurden vier Szenarien untersucht: Die Priorisierung chemischer Verbindungen für ein nachfolgendes Hochdurchsatz Screening, die Auswahl chemischer Verbindungen für eine nachfolgende Leitstrukturoptimierung, die Abschätzung der Wahrscheinlichkeit inwieweit eine chemischer Verbindung eine bestimmte biologische Aktivität zeigt und die Identifizierung derjenigen chemischen Verbindung die die größte Aktivität zeigt wurden hierbei untersucht. Des Weiteren wurde die Eignung unterschiedlicher ligand-basierter Methoden des virtuellen Screenings und verschiedener, chemischer Strukturrepräsentationen für jedes der vier Szenarien überprüft. Unterschiedliche Kriterien zur Bewertung der Güte des durchgeführten virtuellen Screening Experiments wurden untersucht und diskutiert. Die optimale Größe des Trainingsdatensatzes, die unterschiedliche Abdeckung des chemischen Raums zweier großer Datenbanken für biologisch aktive Verbindungen, der systematische Fehler hervorgerufen durch die Auswahl der Trainingsdatensatzes, die Unterschiede der chemischen Verbindungen die mit den verschiedenen Verfahren und/oder Deskriptoren gefunden werden konnten wurden diskutiert. Die Erkenntnisse, die in dieser Arbeit gewonnen wurden, können als Leitfaden für weitere Studien, sowohl für Untersuchungen auf dem Gebiet der Chemotaxonomie und des ligandbasierten virtuellen Screenings. Auf dem Gebiet der Chemotaxonomie beispielsweise, könnte eine vergleichende Studie auf Basis der bestehenden taxonomischen Einteilung der Pflanzenfamilie der Asteraceae neue Erkenntnisse über das wechselseitige Verhältnis zwischen den einzelnen Asteraceae Spezies ans Licht bringen. Basierend auf dem ligand-basierten virtuellen Screening wäre eine Studie interessant, die mit weiteren Techniken der Neuheitserkennung den Einfluss der konformativen Flexibilität des Liganden untersucht. Die in dieser Arbeit präsentierten Studien zeigen die Anwendbarkeit von Techniken des maschinellen Lernens anhand verschiedener Problemkreise aus dem Gebiet der Chemie. Unter Verwendung unterschiedlicher Techniken des maschinellen Lernens konnte gezeigt werden, wie Wissen aus kleinen sowie großen chemischen Datenbanken extrahiert werden kann. Dieses Wissen ist in unserer modernen und an Informationen reichen Welt von großem Wert
Photooxidation Mechanism of Methanol on Rutile TiO<sub>2</sub> Nanoparticles
The use of nanoparticulate TiO<sub>2</sub> as a photocatalyst
for
the conversion of organic molecules has grown tremendously in recent
years; however, the roles of excited electrons, holes, and surface
adsorbates in titania photochemistry remain poorly understood. In
this work, detailed infrared measurements, which are sensitive to
both vibrational and electronic transitions within the material, are
used to uncover the mechanism of methanol oxidation on 4 nm rutile
nanoparticles in both anaerobic and aerobic conditions. These experiments
are performed in an ultrahigh vacuum cell where the coverage of methanol
and exposure to oxygen are precisely controlled. Our measurements
reveal that the primary pathway for initial methanol adsorption on
TiO<sub>2</sub> is dissociative, leading to the production of adsorbed
methoxy groups. Upon exposure of the sample to ultraviolet photons,
the results show that the electron–hole pairs (e<sup>–</sup>–h<sup>+</sup>) generated within TiO<sub>2</sub> have significant
lifetimes because the holes are efficiently trapped by the surface
methoxy groups. The subsequent photochemistry induces a two-electron
oxidative degradation process of the surface methoxy groups to formate.
Formate production proceeds through the formation of a radical anion,
the result of hole oxidation, followed by prompt electron injection
by the radical anion into the TiO<sub>2</sub>. Furthermore, these
studies show that the role of O<sub>2</sub> in promoting methanol
photodecomposition is to scavenge free electrons, which opens acceptor
sites for the injection of new electrons during methoxy group oxidation.
In this way, O<sub>2</sub> increases the efficiency of methoxy oxidation
by a factor of 5 relative to anaerobic conditions, yet does not affect
the hole-mediated oxidation mechanism that leads to final formate
production
Infrared Spectroscopic Studies of Conduction Band and Trapped Electrons in UV-Photoexcited, H-Atom n-Doped, and Thermally Reduced TiO<sub>2</sub>
Transmission FTIR spectroscopy is used to explore the
electronic
structure of excited TiO<sub>2</sub> nanoparticles. Broad infrared
spectral features in UV-photoexcited, n-doped, and thermally reduced
titania are found to be well-described by two theoretical models,
which independently account for the creation of free conduction band
electrons and trapped localized electrons that occupy states within
the band gap. The infrared spectra indicate that the trapped electrons
reside at shallow donor levels that exist 0.12–0.3 eV below
the conduction band minimum. IR excitation of the trapped electrons
is evidenced by a broad feature in the spectra, which exhibits a maximum
that corresponds to the energy of the donor level. These features
are well described by a hydrogenic-effective mass model. In addition,
free conduction band electrons have a dramatic effect on the infrared
spectra by exhibiting a broad featureless absorbance that increases
exponentially across the entire mid-IR range. This absorbance is the
result of intraconduction band transitions, for which free electron
coupling to acoustic phonons is required to conserve momentum. Both
localized (within the band gap) and delocalized (within the conduction
band) electrons are found to exist in TiO<sub>2</sub> when excess
electrons (are created by different means: UV photoexcitation in the
presence of a hole scavenger (methanol), irradiation with atomic hydrogen,
and thermal removal of lattice oxygen
Ultraviolet and Visible Photochemistry of Methanol at 3D Mesoporous Networks: TiO<sub>2</sub> and Au–TiO<sub>2</sub>
Comparison of methanol photochemistry
at three-dimensionally (3D)
networked aerogels of TiO<sub>2</sub> or Au–TiO<sub>2</sub> reveals that incorporated Au nanoparticles strongly sensitize the
oxide nanoarchitecture to visible light. Methanol dissociatively adsorbs
at the surfaces of TiO<sub>2</sub> and Au–TiO<sub>2</sub> aerogels
under dark, high-vacuum conditions. Upon irradiation of either ultraporous
material with broadband UV light under anaerobic conditions, adsorbed
methoxy groups act as hole-traps and extend conduction-band and shallow-trapped
electron lifetimes. A higher excited-state electron density arises
for UV-irradiated TiO<sub>2</sub> aerogel relative to commercial nanoparticulate
TiO<sub>2</sub>, indicating that 3D networked TiO<sub>2</sub> more
efficiently separates electron–hole pairs. Upon excitation
with narrow-band visible light centered at 550 nm, long-lived excited-state
electrons are evident on CH<sub>3</sub>OH-exposed Au–TiO<sub>2</sub> aerogelsbut not on identically dosed TiO<sub>2</sub> aerogelsverifying that incorporated Au nanoparticles sensitize
the networked oxide to visible light. Under aerobic conditions (20
Torr O<sub>2</sub>) and broadband UV illumination, surface-sited formates
accumulate as adsorbed methoxy groups oxidize, at similar rates, on
Au–TiO<sub>2</sub> and TiO<sub>2</sub> aerogels. Moving to
excitation wavelengths longer than ∼400 nm (i.e., the low-energy
range of UV light) dramatically decreases methoxy photoconversion
for methanol-saturated TiO<sub>2</sub> aerogel, while Au–TiO<sub>2</sub> aerogel remains highly active for methanol photooxidation.
The wavelength dependence of formate production on Au–TiO<sub>2</sub> tracks the absorbance spectrum for this material, which peaks
at λ = 550 nm due to resonance with the surface plasmon in the
Au particles. The photooxidation rate for Au–TiO<sub>2</sub> aerogel at 550 nm is comparable to that for TiO<sub>2</sub> aerogel
under broadband UV illumination, indicating efficient energy transfer
from Au to TiO<sub>2</sub> in the 3D mesoporous nanoarchitecture