101 research outputs found

    Identification of novel Y chromosome encoded transcripts by testis transcriptome analysis of mice with deletions of the Y chromosome long arm.

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    BACKGROUND: The male-specific region of the mouse Y chromosome long arm (MSYq) is comprised largely of repeated DNA, including multiple copies of the spermatid-expressed Ssty gene family. Large deletions of MSYq are associated with sperm head defects for which Ssty deficiency has been presumed to be responsible. RESULTS: In a search for further candidate genes associated with these defects we analyzed changes in the testis transcriptome resulting from MSYq deletions, using testis cDNA microarrays. This approach, aided by accumulating mouse MSYq sequence information, identified transcripts derived from two further spermatid-expressed multicopy MSYq gene families; like Ssty, each of these new MSYq gene families has multicopy relatives on the X chromosome. The Sly family encodes a protein with homology to the chromatin-associated proteins XLR and XMR that are encoded by the X chromosomal relatives. The second MSYq gene family was identified because the transcripts hybridized to a microarrayed X chromosome-encoded testis cDNA. The X loci ('Astx') encoding this cDNA had 92-94% sequence identity to over 100 putative Y loci ('Asty') across exons and introns; only low level Asty transcription was detected. More strongly transcribed recombinant loci were identified that included Asty exons 2-4 preceded by Ssty1 exons 1, 2 and part of exon 3. Transcription from the Ssty1 promotor generated spermatid-specific transcripts that, in addition to the variable inclusion of Ssty1 and Asty exons, included additional exons because of the serendipitous presence of splice sites further downstream. CONCLUSION: We identified further MSYq-encoded transcripts expressed in spermatids and deriving from multicopy Y genes, deficiency of which may underlie the defects in sperm development associated with MSYq deletions.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

    Application of bioassays with Enchytraeus crupticus and Folsomia candida to evaluate the toxicity of a metal-contaminated soil, before and after remediation.

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    Purpose: A contaminated soil was amended to reduce bioavailability of metals (As, Cd, Cu, Pb, and Zn) and to modify its potential environmental impacts. Reproduction toxicity tests using two different soil invertebrates, Enchytraeus crypticus and Folsomia candida, were used to evaluate efficiency of soil amendments to reduce metal availability. Materials and methods: This study has been carried out on a very contaminated soil from El Arteal mining district (SE Spain). The amendments used were marble sludge from the cutting and polishing of marble, compost from greenhouse wastes, and synthetic iron oxides. Soils were analyzed for cation exchange capacity, organic carbon and calcium carbonate content, particle size distribution, pH, electrical conductivity, and total metal content. Porewater and 0.01 M CaC

    Standards in semen examination: publishing reproducible and reliable data based on high-quality methodology

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    Biomedical science is rapidly developing in terms of more transparency, openness and reproducibility of scientific publications. This is even more important for all studies that are based on results from basic semen examination. Recently two concordant documents have been published: the 6th edition of the WHO Laboratory Manual for the Examination and Processing of Human Semen, and the International Standard ISO 23162:2021. With these tools, we propose that authors should be instructed to follow these laboratory methods in order to publish studies in peer-reviewed journals, preferable by using a checklist as suggested in an Appendix to this article

    Conservation status of the American horseshoe crab, (Limulus polyphemus): a regional assessment

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    Climate change impacts on groundwater recharge- uncertainty, shortcomings, and the way forward?

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    An integrated approach to assessing the regional impacts of climate and socio- economic change on groundwater recharge is described from East Anglia, UK. Many factors affect future groundwater recharge including changed precipitation and temperature regimes, coastal flooding, urbanization, woodland establishment, and changes in cropping and rotations. Important sources of uncertainty and shortcomings in recharge estimation are discussed in the light of the results. The uncertainty in, and importance of, socio-economic scenarios in exploring the consequences of unknown future changes are highlighted. Changes to soil properties are occurring over a range of time scales, such that the soils of the future may not have the same infiltration properties as existing soils. The potential implications involved in assuming unchanging soil properties are described. To focus on the direct impacts of climate change is to neglect the potentially important role of policy, societal values and economic processes in shaping the landscape above aquifers. If the likely consequences of future changes of groundwater recharge, resulting from both climate and socio-economic change, are to be assessed, hydrogeologists must increasingly work with researchers from other disciplines, such as socio-economists, agricultural modellers and soil scientists
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