MYCL genotypes and loss of heterozygosity in non-small-cell lung cancer.

Some studies have suggested that the S allele of the MYCL oncogene, which results from an intragenic EcoRI restriction fragment length polymorphism (RFLP), may be associated with cancer susceptibility. In addition, this allele has also been linked to metastases and adverse survival in certain cancers, although studies of lung cancer patients from different populations have yielded controversial results. We studied 108 cases of surgical resected non-small-cell lung cancer (NSCLC) and found no evidence that MYCL genotypes were associated with tumour progression or a worse prognosis. However, the presence of loss of heterozygosity (LOH) at this chromosome 1p32 locus correlated significantly with regional lymph node involvement, as well as advanced TNM stage. These data indicate the existence of a chromosome 1p candidate tumour-suppressor gene(s), possibly in linkage disequilibrium with the EcoRI RFLP in specific populations, which appears to play a role in determining tumour progression in NSCLC. Refined mapping of the critical region of loss should help attempts to identify and clone the candidate gene

Loss of Fhit expression in non-small-cell lung cancer: correlation with molecular genetic abnormalities and clinicopathological features

The FHIT gene is located at a chromosomal site (3p14.2) which is commonly affected by translocations and deletions in human neoplasia. Although FHIT alterations at the DNA and RNA level are frequent in many types of tumours, the biological and clinical significance of these changes is not clear. In this study we aimed at correlating loss of Fhit protein expression with a large number of molecular genetic and clinical parameters in a well-characterized cohort of non-small-cell lung cancers (NSCLCs). Paraffin sections of 99 non-small-cell carcinomas were reacted with an anti-Fhit polyclonal antibody in a standard immunohistochemical reaction. Abnormal cases were characterized by complete loss of cytoplasmic Fhit staining. The Fhit staining results were then correlated with previously obtained clinical and molecular data. Fifty-two of 99 tumours lacked cytoplasmic Fhit staining, with preserved reactivity in adjacent normal cells. Lack of Fhit staining correlated with: loss of heterozygosity (LOH) at the FHIT 3p14.2 locus, but not at other loci on 3p; squamous histology; LOH at 17p13 and 5q but not with LOH at multiple other suspected tumour suppressor gene loci; and was inversely correlated with codon 12 mutations in K- ras. Fhit expression was not correlated overall with a variety of clinical parameters including survival and was not associated with abnormalities of immunohistochemical expression of p53, RB, and p16. All of these findings are consistent with loss of Fhit protein expression being as frequent an abnormality in lung cancer pathogenesis as are p53 and p16 protein abnormalities and that such loss occurs independently of the commitment to the metastatic state and of most other molecular abnormalities. © 2000 Cancer Research Campaig

Self-Regulation in a Web-Based Course: A Case Study

Little is known about how successful students in Web-based courses self-regulate their learning. This descriptive case study used a social cognitive model of self-regulated learning (SRL) to investigate how six graduate students used and adapted traditional SRL strategies to complete tasks and cope with challenges in a Web-based technology course; it also explored motivational and environmental influences on strategy use. Primary data sources were three transcribed interviews with each of the students over the course of the semester, a transcribed interview with the course instructor, and the students’ reflective journals. Archived course documents, including transcripts of threaded discussions and student Web pages, were secondary data sources. Content analysis of the data indicated that these students used many traditional SRL strategies, but they also adapted planning, organization, environmental structuring, help seeking, monitoring, record keeping, and self-reflection strategies in ways that were unique to the Web-based learning environment. The data also suggested that important motivational influences on SRL strategy use—self-efficacy, goal orientation, interest, and attributions—were shaped largely by student successes in managing the technical and social environment of the course. Important environmental influences on SRL strategy use included instructor support, peer support, and course design. Implications for online course instructors and designers, and suggestions for future research are offered

New metric reconstruction scheme for gravitational self-force calculations

Inspirals of stellar-mass objects into massive black holes will be important sources for the space-based gravitational-wave detector LISA. Modelling these systems requires calculating the metric perturbation due to a point particle orbiting a Kerr black hole. Currently, the linear perturbation is obtained with a metric reconstruction procedure that puts it in a "no-string" radiation gauge which is singular on a surface surrounding the central black hole. Calculating dynamical quantities in this gauge involves a subtle procedure of "gauge completion" as well as cancellations of very large numbers. The singularities in the gauge also lead to pathological field equations at second perturbative order. In this paper we re-analyze the point-particle problem in Kerr using the corrector-field reconstruction formalism of Green, Hollands, and Zimmerman (GHZ). We clarify the relationship between the GHZ formalism and previous reconstruction methods, showing that it provides a simple formula for the "gauge completion". We then use it to develop a new method of computing the metric in a more regular gauge: a Teukolsky puncture scheme. This scheme should ameliorate the problem of large cancellations, and by constructing the linear metric perturbation in a sufficiently regular gauge, it should provide a first step toward second-order self-force calculations in Kerr. Our methods are developed in generality in Kerr, but we illustrate some key ideas and demonstrate our puncture scheme in the simple setting of a static particle in Minkowski spacetime

Conserved currents for Kerr and orthogonality of quasinormal modes

We introduce a bilinear form for Weyl scalar perturbations of Kerr. The formis symmetric and conserved, and we show that, when combined with a suitablerenormalization prescription involving complex r integration contours,quasinormal modes are orthogonal in the bilinear form for different (l, m, n).These properties are not in any straightforward way consequences of standardproperties for the radial and angular solutions to the decoupled Teukolskyrelations and rely on the Petrov type D character of Kerr and its t-$\phi$reflection isometry. Finally, we show that quasinormal mode excitationcoefficients are given precisely by the projection with respect to our bilinearform. We believe that these properties can make our bilinear form useful to setup a framework for nonlinear quasinormal mode coupling in Kerr. We include ageneral discussion on conserved local currents and their associated localsymmetry operators for metric and Weyl perturbations of Kerr. In particular, weobtain an infinite set of conserved, local, gauge invariant currents associatedwith Carter's constant for metric perturbations, containing 2n + 9 derivatives.<br

Using level-2 fuzzy sets to combine uncertainty and imprecision in fuzzy regions

In many applications, spatial data need to be considered but are prone to uncertainty or imprecision. A fuzzy region - a fuzzy set over a two dimensional domain - allows the representation of such imperfect spatial data. In the original model, points of the fuzzy region where treated independently, making it impossible to model regions where groups of points should be considered as one basic element or subregion. A first extension overcame this, but required points within a group to have the same membership grade. In this contribution, we will extend this further, allowing a fuzzy region to contain subregions in which not all points have the same membership grades. The concept can be used as an underlying model in spatial applications, e.g. websites showing maps and requiring representation of imprecise features or websites with routing functions needing to handle concepts as walking distance or closeby

Failure mechanisms and surface roughness statistics of fractured Fontainebleau sandstone

In an effort to investigate the link between failure mechanisms and the geometry of fractures of compacted grains materials, a detailed statistical analysis of the surfaces of fractured Fontainebleau sandstones has been achieved. The roughness of samples of different widths W is shown to be self affine with an exponent zeta=0.46 +- 0.05 over a range of length scales ranging from the grain size d up to an upper cut-off length \xi = 0.15 W. This low zeta value is in agreement with measurements on other sandstones and on sintered materials. The probability distributions P(delta z,delta h) of the variations of height over different distances delta z > d can be collapsed onto a single Gaussian distribution with a suitable normalisation and do not display multifractal features. The roughness amplitude, as characterized by the height-height correlation over fixed distances delta z, does not depend on the sample width, implying that no anomalous scaling of the type reported for other materials is present. It is suggested, in agreement with recent theoretical work, to explain these results by the occurence of brittle fracture (instead of damage failure in materials displaying a higher value of zeta = 0.8).Comment: 7 page

Comment on "X-ray resonant scattering studies of orbital and charge ordering in Pr1-xCaxMnO3"

In a recent published paper [Phys. Rev. B 64, 195133 (2001)], Zimmermann et al. present a systematic x-ray scattering study of charge and orbital ordering phenomena in the Pr1-xCaxMnO3 series with x= 0.25, 0.4 and 0.5. They propose that for Ca concentrations x=0.4 and 0.5, the appearance of (0, k+1/2, 0) reflections are originated by the orbital ordering of the eg electrons in the a-b plane while the (0, 2k+1, 0) reflections are due to the charge ordering among the Mn3+ and Mn4+ ions. Moreover, for small Ca concentrations (x<0.3), the orbital ordering is only considered and it occurs at (0, k, 0) reflections. A rigorous analysis of all these resonance reflections will show the inadequacy of the charge-orbital model proposed to explain the experimental results. In addition, this charge-orbital model is highly inconsistent with the electronic balance. On the contrary, these reflections can be easily understood as arising from the anisotropy of charge distribution induced by the presence of local distortions, i.e. due to a structural phase transition.Comment: 10 pages, 2 figures.To be published Phys. Rev.

High-fidelity simulations of CdTe vapor deposition from a new bond-order potential-based molecular dynamics method

CdTe has been a special semiconductor for constructing the lowest-cost solar cells and the CdTe-based Cd1-xZnxTe alloy has been the leading semiconductor for radiation detection applications. The performance currently achieved for the materials, however, is still far below the theoretical expectations. This is because the property-limiting nanoscale defects that are easily formed during the growth of CdTe crystals are difficult to explore in experiments. Here we demonstrate the capability of a bond order potential-based molecular dynamics method for predicting the crystalline growth of CdTe films during vapor deposition simulations. Such a method may begin to enable defects generated during vapor deposition of CdTe crystals to be accurately explored

New Generic Ringdown Frequencies at the Birth of a Kerr Black Hole

We discuss a new ringdown frequency mode for vacuum perturbations of the Kerr black hole. We evolve initial data for the vacuum radial Teukolsky equation using a near horizon approximation, and find a frequency mode analogous to that found in a recent study of radiation generated by a plunging particle close to the Kerr horizon. We discuss our results in the context of that study. We also explore the utility of this mode by fitting a numerical waveform with a combination of the usual quasi-normal modes (QNMs) and the new oscillation frequency.Comment: 17 pages, 8 figures. Numerical analysis corrected, references added; reflects published versio