Tectono-Thermal History of the Neoarchean Balehonnur Shear Zone, Western Dharwar Craton (Southern India)

AbstractA widely spaced Neoarchean shear zone network traverses the granite-greenstone terrains of the Western Dharwar craton (WDC). The NNW-SSE trending Balehonnur shear zone traverses the largest part of the preserved tilted Archean crustal ensemble in the Western Dharwar craton (WDC) from the amphibolite-granulite transition in the south to greenschist facies in the north and eventually concealed under Deccan lava flows. Published tectonic fabrics data and kinematic analysis, with our data reveal a sinistral sense of shearing that effectuate greenstone sequences, Tonalite-Trondhjemite-Granodiorite Gneisses (TTG), and Koppa granite as reflected in variable deformation and strain localization. A profound increase of strain towards the core of the shear zone in the ca. 2610 Ma Koppa granite is marked by a transition from weak foliation outside the shear zone through the development of C-S structures and C-prime fabrics, mylonite to ultramylonite. The mineral assemblages in the Koppa granite and adjoining greenstone indicate near peak P-T conditions of 1.2 Gpa, 775-800°C following a slow cooling path of 1.0 GPa and 650°C. Field-based tectonic fabrics data together with U-Pb zircon ages reveal that the Koppa granite emplaced along the contact zone of Shimoga-Bababudan basin ca. 2610 Ma, coinciding with the emplacement of ca. 2600 Ma Arsikere-Banavara, Pandavpura, and Chitradurga granites further east which mark the stabilization of WDC. Significant variation in major element oxide (SiO2 = 56-69 wt.%) together with high content of incompatible elements (REE, Nb, Zr, and Y) and high zircon crystallization temperatures (~1000°C) of Koppa granite suggests derivation by partial melting of composite sources involving enriched uppermost mantle and lower crust. The development of widely spaced shear zones is probably linked to the assembly of eastern and western blocks through westward convergence of hot oceanic lithosphere against already cratonized thick colder western block leading to the development of strain heterogeneities between greenstone and TTGs due to their different mineral assemblages leading to rheological contrast in the cratonic lithologies

PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines

Secondary structure prediction is a crucial task for understanding the variety of protein structures and performed biological functions. Prediction of secondary structures for new proteins using their amino acid sequences is of fundamental importance in bioinformatics. We propose a novel technique to predict protein secondary structures based on position-specific scoring matrices (PSSMs) and physico-chemical properties of amino acids. It is a two stage approach involving multiclass support vector machines (SVMs) as classifiers for three different structural conformations, viz., helix, sheet and coil. In the first stage, PSSMs obtained from PSI-BLAST and five specially selected physicochemical properties of amino acids are fed into SVMs as features for sequence-to-structure prediction. Confidence values for forming helix, sheet and coil that are obtained from the first stage SVM are then used in the second stage SVM for performing structure-to-structure prediction. The two-stage cascaded classifiers (PSP_MCSVM) are trained with proteins from RS126 dataset. The classifiers are finally tested on target proteins of critical assessment of protein structure prediction experiment-9 (CASP9). PSP_MCSVM with brainstorming consensus procedure performs better than the prediction servers like Predator, DSC, SIMPA96, for randomly selected proteins from CASP9 targets. The overall performance is found to be comparable with the current state-of-the art. PSP_MCSVM source code, train-test datasets and supplementary files are available freely in public domain at: http://sysbio.icm.edu.pl/secstruct and http://code.google.com/p/cmater-bioinfo

P.: Load balancing by distributed optimisation in ad hoc networks

Abstract. We approach the problem of load balancing for wireless multi-hop networks by distributed optimisation. We implement an approximation algorithm for minimising the maximum network congestion as a modification to the DSR routing protocol. The algorithm is based on shortest-path computations that are integrated into the DSR route discovery and maintenance process. The resulting Balanced Multipath Source Routing (BMSR) protocol does not need to disseminate global information throughout the network. Our simulations with the ns2 simulator show a gain of 14 % to 69 % in the throughput, depending on the setup, compared to DSR for a high network load.

A soft computing tool for species classification and prediction of glucomannan content in Amorphophallus genus

The proposed work aims at designing a classification system for automatic identification of A. muelleri species, grown as a potential cash crop in many Asian countries, from the DNA fingerprints of Amorphophallus genus. Four sets of 48 DNA fingerprints belonging to 37 species of the Amorphophallus genus, developed with the help of four different primers are considered for the experiment, with an objective to identify only the fingerprints of the species of interest. A second experimental setup deals with the automatic classification of species containing high amounts of glucomannan from the same set of DNA fingerprints of the Amorphophallus genus. For each set of 48 DNA fingerprints generated with a specific primer, the DNA fingerprints are preprocessed to extract a 42 dimensional feature vector which is used to generate a k-Nearest Neighbor based classifier based on the Leave One Out Cross Validation protocol. Final classification based on outputs from individual classifiers constructed with respect to the four different primers is performed according to a n-star consensus strategy. The n-star consensus predicts species A. muelleri with cent per cent accuracy while it predicts species containing glucomannan with a more modest accuracy of 81.25%

Reduction of triterpenoid ketones with bornan-2-exo-yloxyaluminium dichloride: a convenient preparation of axial triterpene alcohols

Reduction of 3-oxo-triterpenoids with bornan-2-exo-yloxyaluminium dichloride furnishes axial (3 α-) alcohols as the major products (75-100%), which are easily separable from the reaction mixtures. Reduction with sodium borohydride gives mainly the 3α-alcohols (85-95%)

Tectono-Thermal History of the Neoarchean Balehonnur Shear Zone, Western Dharwar Craton (Southern India)

Abstract A widely spaced Neoarchean shear zone network traverses the granite-greenstone terrains of the Western Dharwar craton (WDC). The NNW-SSE trending Balehonnur shear zone traverses the largest part of the preserved tilted Archean crustal ensemble in the Western Dharwar craton (WDC) from the amphibolite-granulite transition in the south to greenschist facies in the north and eventually concealed under Deccan lava flows. Published tectonic fabrics data and kinematic analysis, with our data reveal a sinistral sense of shearing that effectuate greenstone sequences, Tonalite-Trondhjemite-Granodiorite Gneisses (TTG), and Koppa granite as reflected in variable deformation and strain localization. A profound increase of strain towards the core of the shear zone in the ca. 2610 Ma Koppa granite is marked by a transition from weak foliation outside the shear zone through the development of C-S structures and C-prime fabrics, mylonite to ultramylonite. The mineral assemblages in the Koppa granite and adjoining greenstone indicate near peak P-T conditions of 1.2 Gpa, 775-800°C following a slow cooling path of 1.0 GPa and 650°C. Field-based tectonic fabrics data together with U-Pb zircon ages reveal that the Koppa granite emplaced along the contact zone of Shimoga-Bababudan basin ca. 2610 Ma, coinciding with the emplacement of ca. 2600 Ma Arsikere-Banavara, Pandavpura, and Chitradurga granites further east which mark the stabilization of WDC. Significant variation in major element oxide (SiO2 = 56-69 wt.%) together with high content of incompatible elements (REE, Nb, Zr, and Y) and high zircon crystallization temperatures (~1000°C) of Koppa granite suggests derivation by partial melting of composite sources involving enriched uppermost mantle and lower crust. The development of widely spaced shear zones is probably linked to the assembly of eastern and western blocks through westward convergence of hot oceanic lithosphere against already cratonized thick colder western block leading to the development of strain heterogeneities between greenstone and TTGs due to their different mineral assemblages leading to rheological contrast in the cratonic lithologies