Nonlinear evolution of dark matter and dark energy in the Chaplygin-gas cosmology

The hypothesis that dark matter and dark energy are unified through the Chaplygin gas is reexamined. Using generalizations of the spherical model which incorporate effects of the acoustic horizon we show that an initially perturbative Chaplygin gas evolves into a mixed system containing cold dark matter-like gravitational condensate.Comment: 11 pages, 3 figures, substantial revision, title changed, content changed, added references, to appear in JCA

General-Relativistic Thomas-Fermi model

A system of self-gravitating massive fermions is studied in the framework of the general-relativistic Thomas-Fermi model. We study the properties of the free energy functional and its relation to Einstein's field equations. A self-gravitating fermion gas we then describe by a set of Thomas-Fermi type self-consistency equations.Comment: 7 pages, LaTex, to appear in Gen. Rel. Gra

Alternative mechanism for bacteriophage adsorption to the motile bacterium Caulobacter crescentus

2D and 3D cryo-electron microscopy, together with adsorption kinetics assays of ϕCb13 and ϕCbK phage-infected Caulobacter crescentus, provides insight into the mechanisms of infection. ϕCb13 and ϕCbK actively interact with the flagellum and subsequently attach to receptors on the cell pole. We present evidence that the first interaction of the phage with the bacterial flagellum takes place through a filament on the phage head. This contact with the flagellum facilitates concentration of phage particles around the receptor (i.e., the pilus portals) on the bacterial cell surface, thereby increasing the likelihood of infection. Phage head filaments have not been well characterized and their function is described here. Phage head filaments may systematically underlie the initial interactions of phages with their hosts in other systems and possibly represent a widespread mechanism of efficient phage propagation

Spin structure of the nucleon: QCD evolution, lattice results and models

The question how the spin of the nucleon is distributed among its quark and gluon constituents is still a subject of intense investigations. Lattice QCD has progressed to provide information about spin fractions and orbital angular momentum contributions for up- and down-quarks in the proton, at a typical scale \mu^2~4 GeV^2. On the other hand, chiral quark models have traditionally been used for orientation at low momentum scales. In the comparison of such model calculations with experiment or lattice QCD, fixing the model scale and the treatment of scale evolution are essential. In this paper, we present a refined model calculation and a QCD evolution of lattice results up to next-to-next-to-leading order. We compare this approach with the Myhrer-Thomas scenario for resolving the proton spin puzzle.Comment: 11 pages, 6 figures, equation (9) has been corrected leading to a revised figure 1b. Revision matches published versio

Genetic and Computational Identification of a Conserved Bacterial Metabolic Module

We have experimentally and computationally defined a set of genes that form a conserved metabolic module in the α-proteobacterium Caulobacter crescentus and used this module to illustrate a schema for the propagation of pathway-level annotation across bacterial genera. Applying comprehensive forward and reverse genetic methods and genome-wide transcriptional analysis, we (1) confirmed the presence of genes involved in catabolism of the abundant environmental sugar myo-inositol, (2) defined an operon encoding an ABC-family myo-inositol transmembrane transporter, and (3) identified a novel myo-inositol regulator protein and cis-acting regulatory motif that control expression of genes in this metabolic module. Despite being encoded from non-contiguous loci on the C. crescentus chromosome, these myo-inositol catabolic enzymes and transporter proteins form a tightly linked functional group in a computationally inferred network of protein associations. Primary sequence comparison was not sufficient to confidently extend annotation of all components of this novel metabolic module to related bacterial genera. Consequently, we implemented the Graemlin multiple-network alignment algorithm to generate cross-species predictions of genes involved in myo-inositol transport and catabolism in other α-proteobacteria. Although the chromosomal organization of genes in this functional module varied between species, the upstream regions of genes in this aligned network were enriched for the same palindromic cis-regulatory motif identified experimentally in C. crescentus. Transposon disruption of the operon encoding the computationally predicted ABC myo-inositol transporter of Sinorhizobium meliloti abolished growth on myo-inositol as the sole carbon source, confirming our cross-genera functional prediction. Thus, we have defined regulatory, transport, and catabolic genes and a cis-acting regulatory sequence that form a conserved module required for myo-inositol metabolism in select α-proteobacteria. Moreover, this study describes a forward validation of gene-network alignment, and illustrates a strategy for reliably transferring pathway-level annotation across bacterial species

A Symbiotic Scenario for the Rapid Formation of Supermassive Black Holes

The most massive black holes, lurking at the centers of large galaxies, must have formed less than a billion years after the big bang, as they are visible today in the form of bright quasars at redshift larger than six. Their early appearance is mysterious, because the radiation pressure, generated by infalling ionized matter, inhibits the rapid growth of these black holes from stellar-mass black holes. Here we show that the supermassive black holes may form timeously through the accretion of radiationless and densely packed neutrino dark matter onto stellar-mass black holes. Our symbiotic scenario relies on the formation of, first, supermassive degenerate sterile neutrino balls through gravitational cooling and, then, stellar-mass black holes through supernova explosions of massive stars at the center of the neutrino balls. The observed lower and upper limits of the supermassive black holes are explained by the corresponding mass limits of the preformed neutrino balls.Comment: 10 pages, 3 figure

Dark Energy Model with Spinor Matter and Its Quintom Scenario

A class of dynamical dark energy models, dubbed Spinor Quintom, can be constructed by a spinor field $\psi$ with a nontraditional potential. We find that, if choosing suitable potential, this model is able to allow the equation-of-state to cross the cosmological constant boundary without introducing any ghost fields. In a further investigation, we show that this model is able to mimic a perfect fluid of Chaplygin gas with $p=-c/\rho$ during the evolution, and also realizes the Quintom scenario with its equation-of-state across -1.Comment: 20 pages, 5 figures, accepted by CQG, several references adde

First-Line Matched Related Donor Hematopoietic Stem Cell Transplantation Compared to Immunosuppressive Therapy in Acquired Severe Aplastic Anemia

INTRODUCTION: Acquired severe aplastic anemia (SAA) is a rare and progressive disease characterized by an immune-mediated functional impairment of hematopoietic stem cells. Transplantation of these cells is a first-line treatment option if HLA-matched related donors are available. First-line immunosuppressive therapy may be offered as alternative. The aim was to compare the outcome of these patients in controlled trials. METHODS: A systematic search was performed in the bibliographic databases MEDLINE, EMBASE, and The Cochrane Library. To show an overview of various outcomes by treatment group we conducted a meta-analysis on overall survival. We evaluated whether studies reported statistically significant factors for improved survival. RESULTS: 26 non-randomized controlled trials (7,955 patients enrolled from 1970 to 2001) were identified. We did not identify any RCTs. Risk of bias was high except in 4 studies. Young age and recent year of treatment were identified as factors for improved survival in the HSCT group. Advanced age, SAA without very severe aplastic anemia, and combination of anti-lymphocyte globulin with cyclosporine A were factors for improved survival in the IST group. In 19 studies (4,855 patients), summary statistics were sufficient to be included in meta-analysis. Considerable heterogeneity did not justify a pooled estimate. Adverse events were inconsistently reported and varied significantly across studies. CONCLUSIONS: Young age and recent year of treatment were identified as factors for improved survival in the transplant group. Advanced age, SAA without very severe aplastic anemia, and combination of anti-lymphocyte globulin with cyclosporine A were factors for improved survival in the immunosuppressive group. Considerable heterogeneity of non-randomized controlled studies did not justify a pooled estimate. Adverse events were inconsistently reported and varied significantly across studies

Temporal Controls of the Asymmetric Cell Division Cycle in Caulobacter crescentus

The asymmetric cell division cycle of Caulobacter crescentus is orchestrated by an elaborate gene-protein regulatory network, centered on three major control proteins, DnaA, GcrA and CtrA. The regulatory network is cast into a quantitative computational model to investigate in a systematic fashion how these three proteins control the relevant genetic, biochemical and physiological properties of proliferating bacteria. Different controls for both swarmer and stalked cell cycles are represented in the mathematical scheme. The model is validated against observed phenotypes of wild-type cells and relevant mutants, and it predicts the phenotypes of novel mutants and of known mutants under novel experimental conditions. Because the cell cycle control proteins of Caulobacter are conserved across many species of alpha-proteobacteria, the model we are proposing here may be applicable to other genera of importance to agriculture and medicine (e.g., Rhizobium, Brucella)

Atmospheric processing outside clouds increases soluble iron in mineral dust

Iron (Fe) is a key micronutrient regulating primary productivity in many parts of the global ocean. Dust deposition is an important source of Fe to the surface ocean, but most of this Fe is biologically unavailable. Atmospheric processing and reworking of Fe in dust aerosol can increase the bioavailable Fe inputs to the ocean, yet the processes are not well understood. Here, we experimentally simulate and model the cycling of Fe-bearing dust between wet aerosol and cloud droplets. Our results show that insoluble Fe in dust particles readily dissolves under acidic conditions relevant to wet aerosols. By contrast, under the higher pH conditions generally relevant to clouds, Fe dissolution tends to stop, and dissolved Fe precipitates as poorly crystalline nanoparticles. If the dust-bearing cloud droplets evaporated again (returning to the wet aerosol stage with low pH), those neo-formed Fe nanoparticles quickly redissolve, while the refractory Fe-bearing phases continue to dissolve gradually. Overall, the duration of the acidic, wet aerosol stage ultimately increases the amount of potentially bioavailable Fe delivered to oceans, while conditions in clouds favor the formation of Fe-rich nanoparticles in the atmosphere