Non-invasive genetic tracking of Harbor Seals (Phoca vitulina)

Understanding the effect of individual differences on trophic interactions of upper-level predators, which can have disproportionate effects on an ecosystem, is imperative for successful management of populations. Marine mammals that prey on fish species of commercial and conservation importance are thus of particular interest. However, quantitatively monitoring and evaluating the impact of marine mammals on the environment is challenging because it is difficult to observe, capture, and collect repeated samples of individuals. Molecular genetic analysis of scat provides an inexpensive and feasible option to address these challenges. I developed an innovative non-invasive method for re-sampling individual marine mammals by collecting harbor seal (Phoca vitulina) scat at a haul-out in Cowichan Bay, B.C. I chose to study this species because it is the most abundant pinniped in the inland waters of the Pacific Northwest and a notable predator on fisheries stocks. In addition, a Python-based computer program for experimental design, incorporating genotyping error, was created to determine the sampling schemes needed to genetically track individuals of any taxa with site fidelity. My results demonstrate that non-invasive individual tracking via microsatellites can be successfully implemented in marine mammals. Furthermore, the optimum sampling scheme to track individuals over a given time frame at the study site requires 690 samples over 23 bouts (30 samples per bout). These genetic-tracking and sampling scheme methodologies can be applied to help answer several biological questions including diet, relatedness, population structure and impacts on species of interest

Effective field theory approach to Casimir interactions on soft matter surfaces

We utilize an effective field theory approach to calculate Casimir interactions between objects bound to thermally fluctuating fluid surfaces or interfaces. This approach circumvents the complicated constraints imposed by such objects on the functional integration measure by reverting to a point particle representation. To capture the finite size effects, we perturb the Hamiltonian by DH that encapsulates the particles' response to external fields. DH is systematically expanded in a series of terms, each of which scales homogeneously in the two power counting parameters: \lambda \equiv R/r, the ratio of the typical object size (R) to the typical distance between them (r), and delta=kB T/k, where k is the modulus characterizing the surface energy. The coefficients of the terms in DH correspond to generalized polarizabilities and thus the formalism applies to rigid as well as deformable objects. Singularities induced by the point particle description can be dealt with using standard renormalization techniques. We first illustrate and verify our approach by re-deriving known pair forces between circular objects bound to films or membranes. To demonstrate its efficiency and versatility, we then derive a number of new results: The triplet interactions present in these systems, a higher order correction to the film interaction, and general scaling laws for the leading order interaction valid for objects of arbitrary shape and internal flexibility.Comment: 4 pages, 1 figur

From Scattering Amplitudes to Classical Potentials in the Post-Minkowskian Expansion

We combine tools from effective field theory and generalized unitarity to construct a map between on-shell scattering amplitudes and the classical potential for interacting spinless particles. For general relativity, we obtain analytic expressions for the classical potential of a binary black hole system at second order in the gravitational constant and all orders in velocity. Our results exactly match all known results up to fourth post-Newtonian order, and offer a simple check of future higher order calculations. By design, these methods should extend to higher orders in perturbation theory.Comment: 5 pages + references. v2: published version, minor correction

Validation of an electrogoniometry system as a measure of knee kinematics during activities of daily living

Purpose: The increasing use of electrogoniometry (ELG) in clinical research requires the validation of different instrumentation. The purpose of this investigation was to examine the concurrent validity of an ELG system during activities of daily living. Methods: Ten asymptomatic participants gave informed consent to participate. A Biometrics SG150 electrogoniometer was directly compared to a 12 camera three dimensional motion analysis system during walking, stair ascent, stair descent, sit to stand, and stand to sit activities for the measurement of the right knee angle. Analysis of validity was undertaken by linear regression. Standard error of estimate (SEE), standardised SEE (SSEE), and Pearson’s correlation coefficient r were computed for paired trials between systems for each functional activity. Results: The 95% confidence interval of SEE was reasonable between systems across walking (LCI = 2.43 °; UCI = 2.91 °), stair ascent (LCI = 2.09 °; UCI = 2.42 °), stair descent (LCI = 1.79 °; UCI = 2.10 °), sit to stand (LCI = 1.22 °; UCI = 1.41 °), and stand to sit (LCI = 1.17 °; UCI = 1.34 °). Pearson’s correlation coefficient r across walking (LCI = 0.983; UCI = 0.990), stair ascent (LCI = 0.995; UCI = 0.997), stair descent (LCI = 0.995; UCI = 0.997), sit to stand (LCI = 0.998; UCI = 0.999), and stand to sit (LCI = 0.996; UCI = 0.997) was indicative of a strong linear relationship between systems. Conclusion: ELG is a valid method of measuring the knee angle during activities representative of daily living. The range is within that suggested to be acceptable for the clinical evaluation of patients with musculoskeletal conditions

On the role of the magnetic field on jet emission in X-ray binaries

Radio and X-ray fluxes of accreting black holes in their hard state are known to correlate over several orders of magnitude. This correlation however shows a large scatter: black hole candidates with very similar X-ray luminosity, spectral energy distribution and variability, show rather different radio luminosities. This challenges theoretical models that aim at describing both the radio and the X-ray fluxes in terms of radiative emission from a relativistic jet. More generally, it opens important questions on how similar accretion flows can produce substantially different outflows. Here we present a possible explanation for this phenomenon, based on the strong dependency of the jet spectral energy distribution on the magnetic field strength, and on the idea that the strength of the jet magnetic field varies from source to source. Because of the effect of radiative losses, sources with stronger jet magnetic field values would have lower radio emission. We discuss the implications of this scenario, the main one being that the radio flux does not necessarily provide a direct measure of the jet power. We further discuss how a variable jet magnetic field, reaching a critical value, can qualitatively explain the observed spectral transition out of the hard state.Comment: 4 pages, 2 figures. Accepted for publication on ApJ Letter

On Writ of Certiorari to the United States Court of Appeals for the Ninth Circuit, Brief of Product Liability Advisory Council, Inc., National Association of Manufacturers, Business Roundtable, and Chemical Manufacturers Association as Amici Curiae in Support of Respondent, William Daubert and Joyce Daubert, Individually and as Guardians Ad Litem for Jason Daubert, and Anita De Young, Individually and as Gaurdian Ad Litem for Eric Schuller v. Merrell Dow Pharmaceuticals, Inc.

The Federal Rules of Evidence exclude expert scientific testimony when it has been developed without regard for accepted scientific methods. This case focuses on expert scientific evidence. Such evidence plays a vital and often dispositive role in modern litigation. For scientific evidence to be helpful to the factfinder it must meet some minimal threshold of reliability. To hold otherwise would be to allow a system of adjudication based more on chance than on reason

The role of B-1 cells in inflammation

B-1 lymphocytes exhibit unique phenotypic, ontogenic, and functional characteristics that differ from the conventional B-2 cells. B-1 cells spontaneously secrete germline-like, repertoire-skewed polyreactive natural antibody, which acts as a first line of defense by neutralizing a wide range of pathogens before launching of the adaptive immune response. Immunomodulatory molecules such as interleukin-10, adenosine, granulocyte-macrophage colony-stimulating factor, interleukin-3, and interleukin-35 are also produced by B-1 cells in the presence or absence of stimulation, which regulate acute and chronic inflammatory diseases. Considerable progress has been made during the past three decades since the discovery of B-1 cells, which has improved not only our understanding of their phenotypic and ontogenic uniqueness but also their role in various inflammatory diseases including influenza, pneumonia, sepsis, atherosclerosis, inflammatory bowel disease, autoimmunity, obesity and diabetes mellitus. Recent identification of human B-1 cells widens the scope of this field, leading to novel innovations that can be implemented from bench to bedside. Among the vast number of studies on B-1 cells, we have carried out a literature review highlighting current trends in the study of B-1 cell involvement during inflammation, which may result in a paradigm shift toward sustainable therapeutics in various inflammatory diseases