Soliton Staircases and Standing Strain Waves in Confined Colloidal Crystals

We show by computer simulation of a two-dimensional crystal confined by corrugated walls that confinement can be used to impose a controllable mesoscopic superstructure of predominantly mechanical elastic character. Due to an interplay of the particle density of the system and the width D of the confining channel, "soliton staircases" can be created along both parallel confining boundaries, that give rise to standing strain waves in the entire crystal. The periodicity of these waves is of the same order as D. This mechanism should be useful for structure formation in the self-assembly of various nanoscopic materials.Comment: 22 pages, 5 figure

Transcriptomic and Exometabolomic Profiling Reveals Antagonistic and Defensive Modes of Clonostachys rosea Action Against Fusarium graminearum

The mycoparasite Clonostachys rosea ACM941 is under development as a biocontrol organism against Fusarium graminearum, the causative agent of Fusarium head blight in cereals. To identify molecular factors associated with this interaction, the transcriptomic and exometabolomic profiles of C. rosea and F. graminearum GZ3639 were compared during coculture. Prior to physical contact, the antagonistic activity of C. rosea correlated with a response heavily dominated by upregulation of polyketide synthase gene clusters, consistent with the detected accumulation of corresponding secondary metabolite products. Similarly, prior to contact, trichothecene gene clusters were upregulated in F. graminearum, while those responsible for fusarielin and fusarin biosynthesis were downregulated, correlating with an accumulation of trichothecene products in the interaction zone over time. A concomitant increase in 15-acetyl deoxynivalenol-3-glucoside in the interaction zone was also detected, with C. rosea established as the source of this detoxified mycotoxin. After hyphal contact, C. rosea was found to predominantly transcribe genes encoding cell wall–degradation enzymes, major facilitator superfamily sugar transporters, anion:cation symporters, as well as alternative carbon source utilization pathways, together indicative of a transition to necrotropism at this stage. F. graminearum notably activated the transcription of phosphate starvation pathway signature genes at this time. Overall, a number of signature molecular mechanisms likely contributing to antagonistic activity by C. rosea against F. graminearum, as well as its mycotoxin tolerance, are identified in this report, yielding several new testable hypotheses toward understanding the basis of C. rosea as a biocontrol agent for continued agronomic development and application

Impact of a glaucoma severity index on results of trabectome surgery: Larger pressure reduction in more severe glaucoma

Purpose: To stratify outcomes of trabectome-mediated ab interno trabeculectomy (AIT) by glaucoma severity using a simple and clinically useful glaucoma index. Based on prior data of trabectome after failed trabeculectomy, we hypothesized that more severe glaucoma might have a relatively more reduced facility compared to mild glaucoma and respond with a larger IOP reduction to trabecular meshwork ablation. Methods: Patients with primary open angle glaucoma who had undergone AIT without any other same session surgery and without any second eye surgery during the following 12 months were analyzed. Eyes of patients that had less than 12 months follow up or were diagnosed with neovascular glaucoma were excluded. A glaucoma index (GI) was created to capture glaucoma severity based on visual field, number of preoperative medications, and preoperative IOP. Visual field (VF) was separated into 3 categories: mild, moderate, and advanced (assigned 1,2, and 3 points, respectively). Preoperative number of medications (meds) was divided into 4 categories: ≤1, 2,3 or ≥4, and assigned with a value of 1 to 4. Baseline IOP (IOP) was divided into 3 categories: 12-18 (Group 3) and >18 (Group 4). Linear regression was used to determine if there was an association between GI group and IOP reduction after one year or age, gender, race, diagnosis, cup to disc (C/D) ratio, and Shaffer grade. Results: Out of 1340 patients, 843 were included in the analysis. The GI group distribution was GI1 = 164, GI2 = 202, GI3 = 260, and GI4 = 216. Mean IOP reduction after one year was 4.0±5.4, 6.4±5.8, 9.0±7.6,12.0±8.0 mmHg for GI groups 1 to 4, respectively. Linear regression showed that IOP reduction was associated with GI group after adjusting for age, gender, race, diagnosis, cup to disc ratio, and Shaffer grade. Each GI group increase of 1 was associated with incremental IOP reductions of 2.95±0.29 mmHg. Success rate at 12 months was 90%, 77%, 77%, and 71% for GI groups 1 to 4. The log-rank test suggested significant differences between GI groups. Conclusion: A simple glaucoma index, GI, was created to capture glaucoma severity and a relative resistance to treatment. A higher GI was associated with a larger IOP reduction in trabectome surgery. This indicates that there is a role for AIT beyond mild glaucoma and ocular hypertension

Idaho National Laboratory Lead or Lead-Bismuth Eutectic (LBE) Test Facility - R&D Requirements, Design Criteria, Design Concept, and Concept Guidance

The Idaho National Laboratory Lead-Bismuth Eutectic Test Facility will advance the state of nuclear technology relative to heavy-metal coolants (primarily Pb and Pb-Bi), thereby allowing the U.S. to maintain the pre-eminent position in overseas markets and a future domestic market. The end results will be a better qualitative understanding and quantitative measure of the thermal physics and chemistry conditions in the molten metal systems for varied flow conditions (single and multiphase), flow regime transitions, heat input methods, pumping requirements for varied conditions and geometries, and corrosion performance. Furthering INL knowledge in these areas is crucial to sustaining a competitive global position. This fundamental heavy-metal research supports the National Energy Policy Development Group’s stated need for energy systems to support electrical generation.1 The project will also assist the Department of Energy in achieving goals outlined in the Nuclear Energy Research Advisory Committee Long Term Nuclear Technology Research and Development Plan,2 the Generation IV Roadmap for Lead Fast Reactor development, and Advanced Fuel Cycle Initiative research and development. This multi-unit Lead-Bismuth Eutectic Test Facility with its flexible and reconfigurable apparatus will maintain and extend the U.S. nuclear knowledge base, while educating young scientists and engineers. The uniqueness of the Lead-Bismuth Eutectic Test Facility is its integrated Pool Unit and Storage Unit. This combination will support large-scale investigation of structural and fuel cladding material compatibility issues with heavy-metal coolants, oxygen chemistry control, and thermal hydraulic physics properties. Its ability to reconfigure flow conditions and piping configurations to more accurately approximate prototypical reactor designs will provide a key resource for Lead Fast Reactor research and development. The other principal elements of the Lead-Bismuth Eutectic Test Facility (in addition to the Pool Unit and Storage Unit) are the Bench Scale Unit and Supporting Systems, principal of which are the O2 Sensor/Calibration System, Feed System, Transfer System, Off- Gas System, Purge and Evacuation System, Oxygen Sensor and Control System, Data Acquisition and Control System, and the Safety Systems. Parallel and/or independent corrosion studies and convective heat transfer experiments for cylindrical and annular geometries will support investigation of heat transfer phenomena into the secondary side. In addition, molten metal pumping concepts and power requirements will be measured for future design use

Regionally discrete aqueous humor outflow quantification using fluorescein canalograms

Purpose To visualize and quantify conventional outflow directly in its anatomic location. Methods We obtained fluorescein canalograms in six porcine whole eyes and six porcine anterior segment cultures. Eyes were perfused with a constant pressure of 15 mmHg using media containing 0.017 mg/ml fluorescein. Flow patterns were visualized using a stereo dissecting microscope equipped for fluorescent imaging. Images were captured every 30 seconds for 20 minutes for time lapse analysis. Anterior chamber cultures were imaged again on day three of culture. Canalograms were first analyzed for filling time per quadrant. We then wrote a program to automatically compute focal flow fits for each macropixel and to detect convergent perilimbal flow patterns with macropixels grouped into 3 equal-radial width rings around the cornea. A generalized additive model was used to determine fluorescence changes of individual macropixels. Results The resulting imaging algorithm deployed 1024 macropixels that were fit to determine maximum intensity and time to fill. These individual fits highlighted the focal flow function. In whole eyes, significantly faster flow was seen in the inferonasal (IN) and superonasal (SN) quadrants compared to the superotemporal (ST) and inferotemporal (IT) ones (p<0.05). In anterior chamber cultures, reduced flow on day 1 increased in all quadrants on day 3 except in IT (p<0.05). Perilimbal ring analysis uncovered convergent perilimbal flow. Conclusions An algorithm was developed that analyzes regional and circumferential outflow patterns. This algorithm found flow patterns that changed over time and differ in whole eyes and anterior segment cultures

Meta-Reinforcement Learning for the Tuning of PI Controllers: An Offline Approach

Meta-learning is a branch of machine learning which trains neural network models to synthesize a wide variety of data in order to rapidly solve new problems. In process control, many systems have similar and well-understood dynamics, which suggests it is feasible to create a generalizable controller through meta-learning. In this work, we formulate a meta reinforcement learning (meta-RL) control strategy that can be used to tune proportional--integral controllers. Our meta-RL agent has a recurrent structure that accumulates "context" to learn a system's dynamics through a hidden state variable in closed-loop. This architecture enables the agent to automatically adapt to changes in the process dynamics. In tests reported here, the meta-RL agent was trained entirely offline on first order plus time delay systems, and produced excellent results on novel systems drawn from the same distribution of process dynamics used for training. A key design element is the ability to leverage model-based information offline during training in simulated environments while maintaining a model-free policy structure for interacting with novel processes where there is uncertainty regarding the true process dynamics. Meta-learning is a promising approach for constructing sample-efficient intelligent controllers.Comment: 23 pages; postprin

Optical Lattices for Atom Based Quantum Microscopy

We describe new techniques in the construction of optical lattices to realize a coherent atom-based microscope, comprised of two atomic species used as target and probe atoms, each in an independently controlled optical lattice. Precise and dynamic translation of the lattices allows atoms to be brought into spatial overlap to induce atomic interactions. For this purpose, we have fabricated two highly stable, hexagonal optical lattices, with widely separted wavelengths but identical lattice constants using diffractive optics. The relative translational stability of 12nm permits controlled interactions and even entanglement operations with high fidelity. Translation of the lattices is realized through a monolithic electro-optic modulator array, capable of moving the lattice smoothly over one lattice site in 11 microseconds, or rapidly on the order of 100 nanoseconds.Comment: 7 pages, 9 figure