Genotype and environment interaction on yield and quality parameters of organically grown winter wheat – Triticum aestivum L. genotypes

The interaction of genotype and environment upon yield and quality parameters of eight winter wheat (Triticum aestivum L.) genotypes was studied under organic conditions in Austria over two growing periods, 2001/2002 and 2002/2003, respectively. Two sites that have significantly different climatic conditions, Innviertel and Marchfeld, were chosen for the field experiment. Study site weather and soil conditions are important yield-affecting factors. Although the yield of Marchfeld-grown genotypes were lower, they had shown higher quality parameter values. Soil moisture conditions increase the grain yield but decrease its quality. To obtain seed with higher quality, a production site with favourable climate conditions should be chosen

The proteostasis network and its decline in ageing

Ageing is a major risk factor for the development of many diseases, prominently including neurodegenerative disorders such as Alzheimer disease and Parkinson disease. A hallmark of many age-related diseases is the dysfunction in protein homeostasis (proteostasis), leading to the accumulation of protein aggregates. In healthy cells, a complex proteostasis network, comprising molecular chaperones and proteolytic machineries and their regulators, operates to ensure the maintenance of proteostasis. These factors coordinate protein synthesis with polypeptide folding, the conservation of protein conformation and protein degradation. However, sustaining proteome balance is a challenging task in the face of various external and endogenous stresses that accumulate during ageing. These stresses lead to the decline of proteostasis network capacity and proteome integrity. The resulting accumulation of misfolded and aggregated proteins affects, in particular, postmitotic cell types such as neurons, manifesting in disease. Recent analyses of proteome-wide changes that occur during ageing inform strategies to improve proteostasis. The possibilities of pharmacological augmentation of the capacity of proteostasis networks hold great promise for delaying the onset of age-related pathologies associated with proteome deterioration and for extending healthspan

Bayesian Analysis of Gene Expression Levels: Statistical Quantification of Relative mRNA Level across Multiple Strains or Treatments

Background: Methods of microarray analysis that suit experimentalists using the technology are vital. Many methodologies discard the quantitative results inherent in cDNA microarray comparisons or cannot be flexibly applied to multifactorial experimental design. Here we present a flexible, quantitative Bayesian framework. This framework can be used to analyze normalized microarray data acquired by any replicated experimental design in which any number of treatments, genotypes, or developmental states are studied using a continuous chain of comparisons. Results: We apply this method to Saccharomyces cerevisiae microarray datasets on the transcriptional response to ethanol shock, to SNF2 and SWI1 deletion in rich and minimal media, and to wild-type and zap1 expression in media with high, medium, and low levels of zinc. The method is highly robust to missing data, and yields estimates of the magnitude of expression differences and experimental error variances on a per-gene basis. It reveals genes of interest that are differentially expressed at below the twofold level, genes with high 'fold-change' that are not statistically significantly different, and genes differentially regulated in quantitatively unanticipated ways. Conclusions: Anyone with replicated normalized cDNA microarray ratio datasets can use the freely available MacOS and Windows software, which yields increased biological insight by taking advantage of replication to discern important changes in expression level both above and below a twofold threshold. Not only does the method have utility at the moment, but also, within the Bayesian framework, there will be considerable opportunity for future development.Organismic and Evolutionary Biolog

On a Conjecture of Rapoport and Zink

In their book Rapoport and Zink constructed rigid analytic period spaces $F^{wa}$ for Fontaine's filtered isocrystals, and period morphisms from PEL moduli spaces of $p$-divisible groups to some of these period spaces. They conjectured the existence of an \'etale bijective morphism $F^a \to F^{wa}$ of rigid analytic spaces and of a universal local system of $Q_p$-vector spaces on $F^a$. For Hodge-Tate weights $n-1$ and $n$ we construct in this article an intrinsic Berkovich open subspace $F^0$ of $F^{wa}$ and the universal local system on $F^0$. We conjecture that the rigid-analytic space associated with $F^0$ is the maximal possible $F^a$, and that $F^0$ is connected. We give evidence for these conjectures and we show that for those period spaces possessing PEL period morphisms, $F^0$ equals the image of the period morphism. Then our local system is the rational Tate module of the universal $p$-divisible group and enjoys additional functoriality properties. We show that only in exceptional cases $F^0$ equals all of $F^{wa}$ and when the Shimura group is $GL_n$ we determine all these cases.Comment: v2: 48 pages; many new results added, v3: final version that will appear in Inventiones Mathematica

Tiefenverteilung von Wurzeln bei Winterweizen

The production and distribution of roots was examined for two winter wheat cultivars (Capo and Saturnus). Plants were grown in PVC tubes of 150 cm length that were placed in a field. The length of roots in 20 cm soil sections was measured at three times. Mean root length densities decreased from 7-15 cm cm-3 soil in the top 20 cm soil to 2 cm cm-3 at soil depths below 80 cm. Only slight differences were obtained for the two cultivars and between harvests. Saturnus produced relatively greater root lengths in upper soil horizons, while Capo spread its roots further down the soil profile. Maximum rooting depth was between 150 to 160 cm

Ultrahigh resolution optical coherence tomography using a superluminescent light source

A superluminescent Ti:Al2O3 crystal is demonstrated as a light source for ultrahigh resolution optical coherence tomography (OCT). Single spatial mode, fiber coupled output powers of ~40 μW can be generated with 138 nm bandwidth using a 5 W frequency doubled, diode pumped laser, pumping a thin Ti:Al2O3 crystal. Ultrahigh resolution OCT imaging is demonstrated with 2.2 μm axial resolution in air, or 1.7 μm in tissue, with >86 dB sensitivity. This light source provides a simple and robust alternative to femtosecond lasers for ultrahigh resolution OCT imaging

Temporal and dimensional effects in evolutionary graph theory

The spread in time of a mutation through a population is studied analytically and computationally in fully-connected networks and on spatial lattices. The time, t_*, for a favourable mutation to dominate scales with population size N as N^{(D+1)/D} in D-dimensional hypercubic lattices and as N ln N in fully-connected graphs. It is shown that the surface of the interface between mutants and non-mutants is crucial in predicting the dynamics of the system. Network topology has a significant effect on the equilibrium fitness of a simple population model incorporating multiple mutations and sexual reproduction. Includes supplementary information.Comment: 6 pages, 4 figures Replaced after final round of peer revie

Dynamic Modeling and Simulation of a Real World Billiard

Gravitational billiards provide an experimentally accessible arena for testing formulations of nonlinear dynamics. We present a mathematical model that captures the essential dynamics required for describing the motion of a realistic billiard for arbitrary boundaries. Simulations of the model are applied to parabolic, wedge and hyperbolic billiards that are driven sinusoidally. Direct comparisons are made between the model's predictions and previously published experimental data. It is shown that the data can be successfully modeled with a simple set of parameters without an assumption of exotic energy dependence.Comment: 10 pages, 3 figure

Group 6 metal complexes as electrocatalysts of CO2 reduction: strong substituent control of the reduction path of [Mo(η3-allyl)(CO)2(x,x′-dimethyl-2,2′-bipyridine)(NCS)] (x = 4–6)

A series of complexes [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)(NCS)] (dmbipy = dimethyl-2,2′-bipyridine; x = 4–6) have been synthesized and their electrochemical reduction investigated using combined cyclic voltammetry (CV) and variable-temperature spectroelectrochemistry (IR/UV-vis SEC) in tetrahydrofuran (THF) and butyronitrile (PrCN), at gold and platinum electrodes. The experimental results, strongly supported by density functional theory (DFT) calculations, indicate that the general cathodic path of these Group 6 organometallic complexes is closely related to that of the intensively studied class of Mn tricarbonyl α-diimine complexes, which, themselves, have recently been identified as important smart materials for catalytic CO2 reduction. The dimethyl substitution on the 2,2′-bipyridine ligand backbone has presented new insights into this emerging class of catalysts. For the first time, the 2e– reduced 5-coordinate anions [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)]− were directly observed with infrared spectroelectrochemistry (IR SEC). The role of steric and electronic effects in determining the reduction-induced reactivity was also investigated. For the 6,6′-dmbipy, the primary 1e– reduced radical anions exert unusual stability, radically changing the follow-up cathodic path. The 5-coordinate anion [Mo(η3-allyl)(CO)2)(6,6′-dmbipy)]− remains stable at low temperature in strongly coordinating butyronitrile and does not undergo dimerization at elevated temperature, in sharp contrast to reactive [Mo(η3-allyl)(CO)2)(4,4′-dmbipy)]− that tends to dimerize in a reaction with the parent complex. The complex with the 5,5′-dmbipy ligand combines both types of reactivity. Under aprotic conditions, the different properties of [Mo(η3-allyl)(CO)2)(x,x′-dmbipy)]− are also reflected in their reactivity toward CO2. Preliminary CV and IR SEC results reveal differences in the strength of CO2 coordination at the free axial position. Catalytic waves attributed to the generation of the 5-coordinate anions were observed using CV, but only a modest catalytic performance toward the production of formate was demonstrated by IR SEC. For 6,6′-dmbipy, a stronger catalytic effect was observed for the Au cathode, compared to Pt

Making SPIFFI SPIFFIER: Upgrade of the SPIFFI instrument for use in ERIS and performance analysis from re-commissioning

SPIFFI is an AO-fed integral field spectrograph operating as part of SINFONI on the VLT, which will be upgraded and reused as SPIFFIER in the new VLT instrument ERIS. In January 2016, we used new technology developments to perform an early upgrade to optical subsystems in the SPIFFI instrument so ongoing scientific programs can make use of enhanced performance before ERIS arrives in 2020. We report on the upgraded components and the performance of SPIFFI after the upgrade, including gains in throughput and spatial and spectral resolution. We show results from re-commissioning, highlighting the potential for scientific programs to use the capabilities of the upgraded SPIFFI. Finally, we discuss the additional upgrades for SPIFFIER which will be implemented before it is integrated into ERIS.Comment: 20 pages, 12 figures. Proceedings from SPIE Astronomical Telescopes and Instrumentation 201