Size structure of phytoplankton biomass in the equatorial Atlantic Ocean

Abstract-The size structure of chlorophyll a (Chl a) and phaeopigments ((20, (10, (3, <2, and <1 ym) has been studied along three transects (4O, 23", and 35OW) covering the entire equatorial Atlantic Ocean, with special attention to the small sizes (<3 pm). Everywhere in the studied area, even in the equatorial upwelling, the bulk of Chl a is within organisms which pass through a 3 pm Nuclepore filter. The vertical distribution of the (1 pm Chl a is closely related to the depth of the nitracline. In the nitrate-depleted mixed layer, the (1 ym Chl a always dominates, and represents 71% of the total Chl a on the average. At the top of the nitracline, the < 1 ym Chl a concentration is maximum but represents only 50% of the total Chl a. In the nitrate-rich waters, whatever the depth, the percentage of (1 pm Chl a is everywhere (50% and decreases downwards. At the bottom of the photic zone, the < 1 prn Chl a values are nearly zero. When integrated over the whole euphotic layer, the < 1 ym Chl a represents about 25% of the total Chl a when nitrate is present at surface; this percentage reaches 60% when the top of the nitracline deepens to 100 m depth. Preliminary measurements of photosynthetic activity (light gradient and time course experiments) indicate that the < 1 ym fraction contains actively photosynthetic organisms but also organisms which are able to fix CO1 in the darkness in a significant proportion. The roles of sinking, nutrients, and light in the vertical distribution of picoplankton are discussed. Our results indicate that the size distribution of Chl a (and especially the relationship between abundance of picoplankton and nitrate distribution) is the same throughout the whole equatorial (MALONE, 1980). Recent studies have focused attention on a smaller size class of autotrophic organisms-the picoplankton ((2 pm, according to SIEBURTH et al., 1978). WATERBURY et al. (1979) and JOHNSON and SIEBURTH (1 979) show the existence of small unicellular cyanobacteria (procaryotes) with a widespread geographical distribution and the ability to achieve considerable densities. Recently, LI et al. (1983) in the eastern tropical Pacific, and PLATT et al. (1983) in the tropical North Atlantic (west of Azores) concluded that autotrophic picoplankton (< 1 prn) are capable of supplying 60% (range 20 to 80%) of the total primary production in the open ecosystem. These two last results are extremely important because they modify our concepts on the biological structure of the pelagic ecosystem, but they are limited in space and time. We .I

Random, blocky and alternating ordering in supramolecular polymers of chemically bidisperse monomers

As a first step to understanding the role of molecular or chemical polydispersity in self-assembly, we put forward a coarse-grained model that describes the spontaneous formation of quasi-linear polymers in solutions containing two self-assembling species. Our theoretical framework is based on a two-component self-assembled Ising model in which the bidispersity is parameterized in terms of the strengths of the binding free energies that depend on the monomer species involved in the pairing interaction. Depending upon the relative values of the binding free energies involved, different morphologies of assemblies that include both components are formed, exhibiting paramagnetic-, ferromagnetic- or anti ferromagnetic-like order,i.e., random, blocky or alternating ordering of the two components in the assemblies. Analyzing the model for the case of ferromagnetic ordering, which is of most practical interest, we find that the transition from conditions of minimal assembly to those characterized by strong polymerization can be described by a critical concentration that depends on the concentration ratio of the two species. Interestingly, the distribution of monomers in the assemblies is different from that in the original distribution, i.e., the ratio of the concentrations of the two components put into the system. The monomers with a smaller binding free energy are more abundant in short assemblies and monomers with a larger binding affinity are more abundant in longer assemblies. Under certain conditions the two components congregate into separate supramolecular polymeric species and in that sense phase separate. We find strong deviations from the expected growth law for supramolecular polymers even for modest amounts of a second component, provided it is chemically sufficiently distinct from the main one.Comment: Submitted to Macromolecules, 6 figures. arXiv admin note: substantial text overlap with arXiv:1111.176

Self-assembly in solution of a reversible comb-shaped supramolecular polymer

We report a single step synthesis of a polyisobutene with a bis-urea moiety in the middle of the chain. In low polarity solvents, this polymer self-assembles by hydrogen bonding to form a combshaped polymer with a central hydrogen bonded backbone and polyisobutene arms. The comb backbone can be reversibly broken, and consequently, its length can be tuned by changing the solvent, the concentration or the temperature. Moreover, we have proved that the bulkiness of the side-chains have a strong influence on both the self-assembly pattern and the length of the backbone. Finally, the density of arms can be reduced, by simply mixing with a low molar mass bis-urea

Experimental demonstration of singular-optical colouring of regularly scattered white light

Experimental interference modelling of the effects of colouring of a beam traversing a light-scattering medium is presented. It is shown that the result of colouring of the beam at the output of the medium depends on the magnitudes of the phase delays of the singly forward scattered partial signals. The colouring mechanism has for the first time experimentally been illustrated for a forward propagating beam through a light-scattering medium. This is showed in video-fragments of the interferograms recorded within the zero interference fringe with a gradual change of the path difference of the interfering polychromatic wave trains. Spectral investigation of the effects of colouring has been carried out using a solution of liquid crystal in a polymer matrix. The amplitude ratio of the non-scattered and the singly forward scattered interfering components significantly affects the colour intensity. It has further been established that the spectral content of the illuminating beam strongly influences the colour of the resulting radiation

Correlated Set Coordination in Fault Tolerant Message Logging Protocols

Abstract. Based on our current expectation for the exascale systems, composed of hundred of thousands of many-core nodes, the mean time between failures will become small, even under the most optimistic as-sumptions. One of the most scalable checkpoint restart techniques, the message logging approach, is the most challenged when the number of cores per node increases, due to the high overhead of saving the message payload. Fortunately, for two processes on the same node, the failure probability is correlated, meaning that coordinated recovery is free. In this paper, we propose an intermediate approach that uses coordination between correlated processes, but retains the scalability advantage of message logging between independent ones. The algorithm still belongs to the family of event logging protocols, but eliminates the need for costly payload logging between coordinated processes.

RDR2 Partially Antagonizes the Production of RDR6-Dependent siRNA in Sense Transgene-Mediated PTGS

Background: RNA-DEPENDENT RNA POLYMERASE6 (RDR6) and SUPPRESSOR of GENE SILENCING 3 (SGS3) are required for DNA methylation and post-transcriptional gene silencing (PTGS) mediated by 21-nt siRNAs produced by sense transgenes (S-PTGS). In contrast, RDR2, but not RDR6, is required for DNA methylation and TGS mediated by 24-nt siRNAs, and for cellto-cell spreading of IR-PTGS mediated by 21-nt siRNAs produced by inverted repeat transgenes under the control of a phloem-specific promoter. Principal Findings: In this study, we examined the role of RDR2 and RDR6 in S-PTGS. Unlike RDR6, RDR2 is not required for DNA methylation of transgenes subjected to S-PTGS. RDR6 is essential for the production of siRNAs by transgenes subjected to S-PTGS, but RDR2 also contributes to the production of transgene siRNAs when RDR6 is present because rdr2 mutations reduce transgene siRNA accumulation. However, the siRNAs produced via RDR2 likely are counteractive in wildtype plants because impairement of RDR2 increases S-PTGS efficiency at a transgenic locus that triggers limited silencing, and accelerates S-PTGS at a transgenic locus that triggers efficient silencing. Conclusions/Significance: These results suggest that RDR2 and RDR6 compete for RNA substrates produced by transgenes subjected to S-PTGS. RDR2 partially antagonizes RDR6 because RDR2 action likely results in the production of counteractiv

A high-frequency, long-term data set of hydrology and sediment yield: the alpine badland catchments of Draix-Bléone Observatory

Draix-Bléone critical zone observatory was created in 1983 to study erosion processes in a mountainous badland region of the French Southern Alps. Six catchments of varying size (0.001 to 22 km2) and vegetation cover are equipped to measure water and sediment fluxes, both as bedload and suspended load. This paper presents the core dataset of the observatory, including rainfall and meteorology, high-frequency discharge and suspended-sediment concentration, and event-scale bedload volumes. The longest records span almost 40 years. Measurement and data-processing methods are presented, as well as data quality assessment procedures and examples of results. All the data presented in this paper are available on the open repository https://doi.org/10.17180/obs.draix (Draix-Bleone Observatory, 2015), and a 5-year snapshot is available for review at https://doi.org/10.57745/BEYQFQ (Klotz et al., 2023).</p

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

Correct gene expression requires tight RNA quality control both at transcriptional and post-transcriptional levels. Using a splicing-defective allele of PASTICCINO2 (PAS2), a gene essential for plant development, we isolated suppressor mutations modifying pas2-1 mRNA profiles and restoring wild-type growth. Three suppressor of pas2 (sop) mutations modified the degradation of mis-spliced pas2-1 mRNA species, allowing the synthesis of a functional protein. Cloning of the suppressor mutations identified the core subunit of the exosome SOP2/RRP4, the exosome nucleoplasmic cofactor SOP3/HEN2 and a novel zinc-finger protein SOP1 that colocalizes with HEN2 in nucleoplasmic foci. The three SOP proteins counteract post-transcriptional (trans)gene silencing (PTGS), which suggests that they all act in RNA quality control. In addition, sop1 mutants accumulate some, but not all of the misprocessed mRNAs and other types of RNAs that are observed in exosome mutants. Taken together, our data show that SOP1 is a new component of nuclear RNA surveillance that is required for the degradation of a specific subset of nuclear exosome targets. [Correction available at https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005958