Evolution of YidC/Oxa1/Alb3 insertases: three independent gene duplications followed by functional specialization in bacteria, mitochondria and chloroplasts

Members of the YidC/Oxa1/Alb3 protein family facilitate the insertion, folding and assembly of proteins of the inner membranes of bacteria and mitochondria and the thylakoid membrane of plastids. All homologs share a conserved hydrophobic core region comprising five transmembrane domains. On the basis of phylogenetic analyses, six subgroups of the family can be distinguished which presumably arose from three independent gene duplications followed by functional specialization. During evolution of bacteria, mitochondria and chloroplasts, subgroup-specific regions were added to the core domain to facilitate the association with ribosomes or other components contributing to the substrate spectrum of YidC/Oxa1/Alb3 proteins

3D AMR hydrosimulations of a compact source scenario for the Galactic Centre cloud G2

The nature of the gaseous and dusty cloud G2 in the Galactic Centre is still under debate. We present three-dimensional hydrodynamical adaptive mesh refinement (AMR) simulations of G2, modeled as an outflow from a "compact source" moving on the observed orbit. The construction of mock position-velocity (PV) diagrams enables a direct comparison with observations and allow us to conclude that the observational properties of the gaseous component of G2 could be matched by a massive ($\dot{M}_\mathrm{w}=5\times 10^{-7} \;M_{\odot} \mathrm{yr^{-1}}$) and slow ($50 \;\mathrm{km \;s^{-1}}$) outflow, as observed for T Tauri stars. In order for this to be true, only the material at larger ($>100 \;\mathrm{AU}$) distances from the source must be actually emitting, otherwise G2 would appear too compact compared to the observed PV diagrams. On the other hand, the presence of a central dusty source might be able to explain the compactness of G2's dust component. In the present scenario, 5-10 years after pericentre the compact source should decouple from the previously ejected material, due to the hydrodynamic interaction of the latter with the surrounding hot and dense atmosphere. In this case, a new outflow should form, ahead of the previous one, which would be the smoking gun evidence for an outflow scenario.Comment: resubmitted to MNRAS after referee report, 16 pages, 11 figure

Dynamics of a Bose-Einstein Condensate in an Anharmonic Trap

We present a theoretical model to describe the dynamics of Bose-Einstein condensates in anharmonic trapping potentials. To first approximation the center-of-mass motion is separated from the internal condensate dynamics and the problem is reduced to the well known scaling solutions for the Thomas-Fermi radii. We discuss the validity of this approach and analyze the model for an anharmonic waveguide geometry which was recently realized in an experiment \cite{Ott2002c}

The onset of synchronization in large networks of coupled oscillators

We study the transition from incoherence to coherence in large networks of coupled phase oscillators. We present various approximations that describe the behavior of an appropriately defined order parameter past the transition, and generalize recent results for the critical coupling strength. We find that, under appropriate conditions, the coupling strength at which the transition occurs is determined by the largest eigenvalue of the adjacency matrix. We show how, with an additional assumption, a mean field approximation recently proposed is recovered from our results. We test our theory with numerical simulations, and find that it describes the transition when our assumptions are satisfied. We find that our theory describes the transition well in situations in which the mean field approximation fails. We study the finite size effects caused by nodes with small degree and find that they cause the critical coupling strength to increase.Comment: To appear in PRE; Added an Appendix, a reference, modified two figures and improved the discussion of the range of validity of perturbative approache

Experimental realization of strange nonchaotic attractors in a quasiperiodically forced electronic circuit

We have identified the three prominent routes, namely Heagy-Hammel, fractalization and intermittency routes, and their mechanisms for the birth of strange nonchaotic attractors (SNAs) in a quasiperiodically forced electronic system constructed using a negative conductance series LCR circuit with a diode both numerically and experimentally. The birth of SNAs by these three routes is verified from both experimental and their corresponding numerical data by maximal Lyapunov exponents, and their variance, Poincar\'e maps, Fourier amplitude spectrum, spectral distribution function and finite-time Lyapunov exponents. Although these three routes have been identified numerically in different dynamical systems, the experimental observation of all these mechanisms is reported for the first time to our knowledge and that too in a single second order electronic circuit.Comment: 21 figure

Ordering of small particles in one-dimensional coherent structures by time-periodic flows

Small particles transported by a fluid medium do not necessarily have to follow the flow. We show that for a wide class of time-periodic incompressible flows inertial particles have a tendency to spontaneously align in one-dimensional dynamic coherent structures. This effect may take place for particles so small that often they would be expected to behave as passive tracers and be used in PIV measurement technique. We link the particle tendency to form one-dimensional structures to the nonlinear phenomenon of phase locking. We propose that this general mechanism is, in particular, responsible for the enigmatic formation of the `particle accumulation structures' discovered experimentally in thermocapillary flows more than a decade ago and unexplained until now

Hydrodynamical simulations of a compact source scenario for G2

The origin of the dense gas cloud G2 discovered in the Galactic Center (Gillessen et al. 2012) is still a debated puzzle. G2 might be a diffuse cloud or the result of an outflow from an invisible star embedded in it. We present here detailed simulations of the evolution of winds on G2's orbit. We find that the hydrodynamic interaction with the hot atmosphere present in the Galactic Center and the extreme gravitational field of the supermassive black hole must be taken in account when modeling such a source scenario. We find that the hydrodynamic interaction with the hot atmosphere present in the Galactic Center and the extreme gravitational field of the supermassive black hole must be taken in account when modeling such a source scenario. We also find that in this scenario most of the Br\gamma\ luminosity is expected to come from the highly filamentary densest shocked wind material. G2's observational properties can be used to constrain the properties of the outflow and our best model has a mass outflow rate of Mdot,w=8.8 x 10^{-8} Msun/yr and a wind velocity of vw = 50 km/s. These values are compatible with those of a young TTauri star wind, as already suggested by Scoville & Burkert (2013).Comment: 4 pages, 3 figures; Proceeding of the IAU 303: "The GC: Feeding and Feedback in a Normal Galactic Nucleus" / September 30 - October 4, 2013, Santa Fe, New Mexico (USA

Walls Inhibit Chaotic Mixing

We report on experiments of chaotic mixing in a closed vessel, in which a highly viscous fluid is stirred by a moving rod. We analyze quantitatively how the concentration field of a low-diffusivity dye relaxes towards homogeneity, and we observe a slow algebraic decay of the inhomogeneity, at odds with the exponential decay predicted by most previous studies. Visual observations reveal the dominant role of the vessel wall, which strongly influences the concentration field in the entire domain and causes the anomalous scaling. A simplified 1D model supports our experimental results. Quantitative analysis of the concentration pattern leads to scalings for the distributions and the variance of the concentration field consistent with experimental and numerical results.Comment: 4 pages, 3 figure