From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems

The collective movements of unicellular organisms such as bacteria or amoeboid (crawling) cells are often modeled by partial differential equations (PDEs) that describe the time evolution of cell density. In particular, chemotaxis equations have been used to model the movement towards various kinds of extracellular cues. Well-developed analytical and numerical methods for analyzing the time-dependent and time-independent properties of solutions make this approach attractive. However, these models are often based on phenomenological descriptions of cell fluxes with no direct correspondence to individual cell processes such signal transduction and cell movement. This leads to the question of how to justify these macroscopic PDEs from microscopic descriptions of cells, and how to relate the macroscopic quantities in these PDEs to individual-level parameters. Here we summarize recent progress on this question in the context of bacterial and amoeboid chemotaxis, and formulate several open problems

Development and applications of a model for cellular response to multiple chemotactic cues

The chemotactic response of a cell population to a single chemical species has been characterized experimentally for many cell types and has been extensively studied from a theoretical standpoint. However, cells frequently have multiple receptor types and can detect and respond chemotactically to more than one chemical. How these signals are integrated within the cell is not known, and we therefore adopt a macroscopic phenomenological approach to this problem. In this paper we derive and analyze chemotactic models based on partial differential (chemotaxis) equations for cell movement in response to multiple chemotactic cues. Our derivation generalizes the approach of Othmer and Stevens [29], who have recently developed a modeling framework for studying different chemotactic responses to a single chemical species. The importance of such a generalization is illustrated by the effect of multiple chemical cues on the chemotactic sensitivity and the spatial pattern of cell densities in several examples. We demonstrate that the model can generate the complex patterns observed on the skin of certain animal species and we indicate how the chemotactic response can be viewed as a form of positional indicator

A chemotactic model for the advance and retreat of the primitive streak in avian development

The formation of the primitive streak in early avian development marks the onset of gastrulation, during which large scale cell movement leads to a trilaminar blastoderm comprising prospective endodermal, mesodermal and ectodermal tissue. During streak formation a specialized group of cells first moves anteriorly as a coherent column, beginning from the posterior end of the prospective anterior-posterior axis (a process called progression), and then reverses course and returns to the most posterior point on the axis (a process called regression). To date little is known concerning the mechanisms controlling either progression or regression. Here we develop a model in which chemotaxis directs the cell movement and which is capable of reproducing the principal features connected with progression and regression of the primitive streak. We show that this model exhibits a number of experimentally-observed features of normal and abnormal streak development, and we propose a number of experimental tests which may serve to illuminate the mechanisms. This paper represents the first attempt to model the global features of primitive streak formation, and provides an initial stage in the development of a more biologically-realistic discrete cell model that will allow for variation of properties between cells and control over movement of individual cells

The intersection of theory and application in elucidating pattern formation in developmental biology

We discuss theoretical and experimental approaches to three distinct developmental systems that illustrate how theory can influence experimental work and vice-versa. The chosen systems - Drosophila melanogaster, bacterial pattern formation, and pigmentation patterns - illustrate the fundamental physical processes of signaling, growth and cell division, and cell movement involved in pattern formation and development. These systems exemplify the current state of theoretical and experimental understanding of how these processes produce the observed patterns, and illustrate how theoretical and experimental approaches can interact to lead to a better understanding of development. As John Bonner said long ago 'We have arrived at the stage where models are useful to suggest experiments, and the facts of the experiments in turn lead to new and improved models that suggest new experiments. By this rocking back and forth between the reality of experimental facts and the dream world of hypotheses, we can move slowly toward a satisfactory solution of the major problems of developmental biology.' © EDP Sciences, 2009

A case study of a radially polarized Pc4 event observed by the Equator-S satellite

International audienceA 16 mHz Pc4 pulsation was recorded on March 17, 1998, in the prenoon sector of the Earth's magnetosphere by the Equator-S satellite. The event is strongly localized in radial direction at approximately L = 5 and exhibits properties of a field line resonance such as an ellipticity change as seen by applying the method of the analytical signal to the magnetic field data. The azimuthal wave number was estimated as m \approx 150. We discuss whether this event can be explained by the FLR mechanism and find out that the change in ellipticity is more a general feature of a localized Alfvén wave than indicative of a resonant process

Pattern formation in Turing systems with mixed boundary conditions

A central issue in developmental biology is the formation of pattern and form in the early embryo. From the apparently homogeneous mass of dividing cells that exists in the earliest stages of development emerges the vast range of pattern and structure observed in the adult. The formation of structure is termed morphogenesis, and pattern generation models are known as morphogenetic models. The role of modelling in morphogenesis is to suggest possible scenarios as to how various physical and chemical processes conspire to produce pattern

Minimal speed of fronts of reaction-convection-diffusion equations

We study the minimal speed of propagating fronts of convection reaction diffusion equations of the form $u_t + \mu \phi(u) u_x = u_{xx} +f(u)$ for positive reaction terms with $f'(0 >0$. The function $\phi(u)$ is continuous and vanishes at $u=0$. A variational principle for the minimal speed of the waves is constructed from which upper and lower bounds are obtained. This permits the a priori assesment of the effect of the convective term on the minimal speed of the traveling fronts. If the convective term is not strong enough, it produces no effect on the minimal speed of the fronts. We show that if $f''(u)/\sqrt{f'(0)} + \mu \phi'(u) < 0$, then the minimal speed is given by the linear value $2 \sqrt{f'(0)}$, and the convective term has no effect on the minimal speed. The results are illustrated by applying them to the exactly solvable case $u_t + \mu u u_x = u_{xx} + u (1 -u)$. Results are also given for the density dependent diffusion case $u_t + \mu \phi(u) u_x = (D(u)u_x)_x +f(u)$.Comment: revised, new results adde