Molecular detection of parasites (Trematoda, Digenea: Bucephalidae and Monorchiidae) in the European flat oyster Ostrea edulis (Mollusca: Bivalvia)

Members of the globally distributed bivalve family Ostreidae (oysters) have a significant role in marine ecosystems and include species of high economic importance. In this work, we report the occurrence of digenean parasites of the families Bucephalidae (Prosorhynchoides sp.) and Monorchiidae (Postmonorchis sp.) in Mediterranean native populations of Ostrea edulis (but not in the introduced Magallana gigas). Molecular detection was based on DNA sequencing of the ribosomal intergenic spacer 2 (ITS2) marker. The importance of detecting the presence of overlooked digenean parasites in Mediterranean oysters is discussed. © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group

The Dynamic Nature of Genomes Across the Tree of Life

Genomes are dynamic in lineages across the tree of life. Among bacteria and archaea, for example, DNA content varies through out life cycles, and nonbinary cell division in diverse lineages indicates the need for coordination of the inheritance of genomes. These observations contrast with the textbook view that bacterial and archaeal genomes are monoploid (i.e., single copied) and fixed both within species and throughout an individual\u27s lifetime. Here, we synthesize information on three aspects of dynamic genomes from exemplars representing a diverse array of bacterial and archaeal lineages: 1) ploidy level variation, 2) epigenetic mechanisms, and 3) life cycle variation. For example, the Euryarchaeota analyzed to date are all polyploid, as is the bacterium Epulopiscium that contains up to tens of thousands of copies of its genome and reproduces by viviparity. The bacterium Deinococcus radiodurans and the archaeon Halobacterium sp. NRC-1 can repair a highly fragmented genome within a few hours. Moreover, bacterial genera such as Dermocarpella and Planctomyces reproduce by fission (i.e., generating many cells from one cell) and budding, respectively, highlighting the need for regulation of genome inheritance in these lineages. Combining these data with our previous work on widespread genome dynamics among eukaryotes, we hypothesize that dynamic genomes are a rule rather than the exception across the tree of life. Further, we speculate that all domains may have the ability to distinguish germline from somatic DNA and that this ability may have been present the last universal common ancestor

Molecular phylogenetics of Haustrinae and Pagodulinae (Neogastropoda: Muricidae) with a focus on New Zealand species

We investigated the relationships of the muricid subfamilies Haustrinae, Pagodulinae and the genus Poirieria using a molecular phylogenetic approach on a dataset of three mitochondrial genes (12S, 16S and COI). These taxa form a well-supported clade within Muricidae. The phylogenetic analysis suggests that Poirieria is the sister group of Pagodulinae and that Axymene, Comptella, Pagodula, Paratrophon, Trophonella, Trophonopsis, Xymene, Xymenella, Xymenopsis and Zeatrophon are all worthy of genus-level rank within this subfamily. We propose the use of Enixotrophon for a group of species currently classified in Pagodula. The results also support a new taxonomic arrangement in Haustrinae

Increase in knowledge of the marine gastropod fauna of Lebanon since the 19th century

We hereby review and update the current state of knowledge on the Lebanese gastropod biota based on published literature and the study of new samples. Review of 1543 published records yielded 237 gastropod taxa. New samples from the Lebanese coast yielded 2414 living specimens and 4003 empty shells, belonging to 188 taxa. Forty-six of the taxa are new records for the Lebanese fauna, bringing the gastropods known from Lebanon to 283 species. Literature records also included 71 nominal gastropod taxa based on type material from Lebanon, including 3 genera, 8 species, and 60 subspecific units. Of these, only 13 are retained as available. Of the 283 gastropod taxa known from Lebanon, 41 are aliens and 7 are cryptogenic. The majority of nonnative taxa were recorded only during the last decades, particularly from 1980 to 2019. Results from the present study question the common assumption that this region has extremely low native diversity. The flora and fauna of the Lebanese coast remain relatively unexplored and our data support the perception that several formerly abundant species have recently collapsed. Despite these advances, the lack of scientific data on biodiversity and community structure of Lebanese habitats and geographic zones is likely to hamper conservation actions and legal protection of critical species. We therefore recommend additional field and laboratory research to increase knowledge of both taxonomic composition and species’ distributions in Lebanon and elsewhere in the easternmost Mediterranean Sea

The spermidine analogue GC7 (N1-guanyl-1,7-diamineoheptane) induces autophagy through a mechanism not involving the hypusination of eIF5A

The exogenous administration of spermidine promotes longevity in many model organisms. It has been proposed that this anti-age activity of spermidine is related to this polyamine's ability to promote autophagy. Since spermidine is the substrate for the eIF5A post-translational modification by hypusination, we asked ourselves whether mature eIF5A may represent the link between spermidine and autophagy induction. To test this hypothesis, we inhibited the conversion of native eIF5A by a pharmacological approach, using the N1-guanyl-1,7-diamineoheptane (GC7), a spermidine analogue which competitively and reversibly inhibits deoxyhypusine synthase (DHS). In addition, we also employed genetic approaches by ablating both the eIF5A protein itself and DHS, the rate limiting enzyme catalyzing the conversion of lysine to hypusine. Collectively the data presented in this study demonstrate that the mature eIF5A (hypusinated form) is not involved in the autophagic pathway and that the inhibitor of DHS, GC7, produces off-target effect(s) resulting in marked induction of basal autophagy. These data are relevant in light of the fact that GC7 is considered a potent and selective inhibitor of DHS and is a potential candidate drug for cancer, diabetes and HIV therapy

Sympatric sibling species: The case of Caloria elegans and Facelina quatrefagesi (Gastropoda: Nudibranchia)

The aeolid nudibranch Caloria elegans (Facelinidae) is quite common in the Mediterranean Sea and eastern Atlantic Ocean and is easily recognized by the presence of a typical black spot at the apical portion of its cerata. Facelina quatrefagesi (Facelinidae) was long considered as a synonym of C. elegans until recently, when it was re-evaluated as a valid species based mainly on rhinophore morphology. In order to definitively assess the status of these aeolid taxa, we employed an integrative taxonomy approach using the nuclear H3 and the two mitochondrial cytochrome oxidase subunit I and 16S markers. The molecular analyses clearly showed that, although morphologically closely related to C. elegans, F. quatrefagesi is a valid species

Biogeographical homogeneity in the eastern Mediterranean Sea - I: the opisthobranchs (Mollusca: Gastropoda) from Lebanon

A reviewed knowledge of the opisthobranch species from Lebanon (eastern Mediterranean Sea), based on literature records (scattered throughout various papers published over a period of more than 150 years) and recently collected material (1999-2002 within the CEDRE framework and other samples), is presented, yielding a total number of 35 taxa recorded from the Lebanese shores identified to species level. Special emphasis has mainly been given to the alien species, for which scattered notes are also given. The known opisthobranch biota is composed of 22 native (~ 63%), 12 alien (~ 34%) and one cryptogenic (~ 3%) taxa. Eleven of these (Berthella aurantiaca, B. ocellata, Aplysia fasciata, Felimare picta, Felimida britoi, F. luteorosea, F. purpurea, Phyllidia flava, Dendrodoris grandiflora, D. limbata and Aeolidiella alderi) constitute new records for the Lebanese fauna, whilst the examined material of a further seven species (Elysia grandifolia, Pleurobranchus forskalii, Aplysia dactylomela, Bursatella leachii, Syphonota geographica, Goniobranchus annulatus, Flabellina rubrolineata) anecdotally cited from Lebanon on the basis of the samples here studied, is here first explained. One additional taxon belonging to the genus Haminoea has been identified to genus level only. Despite the searching effort poning the basis of the material analyzed here, data reported clearly suggest that strong investments are still needed for a better understanding of the eastern Mediterranean opisthobranch fauna

Are Microbes Fundamentally Different Than Macroorganisms? Convergence and a Possible Case for Neutral Phenotypic Evolution in Testate Amoeba (Amoebozoa: Arcellinida)

This study reveals extensive phenotypic convergence based on the non-monophyly of genera and morphospecies of testate (shelled) amoebae. Using two independent markers, small subunit ribosomal DNA (ssu-rDNA) and mitochondrial cytochrome oxidase I (COI), we demonstrate discordance between morphology and molecules for ‘core Nebela’ species (Arcellinida; Amoebozoa). Prior work using just a single locus, ssu-rDNA, also supported the non-monophyly of the genera Hyalosphenia and Nebela as well as for several morphospecies within these genera. Here, we obtained COI gene sequences of 59 specimens from seven morphospecies and ssu-rDNA gene sequences of 50 specimens from six morphospecies of hyalosphenids. Our analyses corroborate the prior ssu-rDNA findings of morphological convergence in test (shell) morphologies, as COI and ssu-rDNA phylogenies are concordant. Further, the monophyly of morphospecies is rejected using approximately unbiased tests. Given that testate amoebae are used as bioindicators in both palaeoecological and contemporary studies of threatened ecosystems such as bogs and fens, understanding the discordance between morphology and genetics in the hyalosphenids is essential for interpretation of indicator species. Further, while convergence is normally considered the result of natural selection, it is possible that neutrality underlies phenotypic evolution in these microorganisms