Specificity of the ribosomal A site for aminoacyl-tRNAs

Although some experiments suggest that the ribosome displays specificity for the identity of the esterified amino acid of its aminoacyl-tRNA substrate, a study measuring dissociation rates of several misacylated tRNAs containing the GAC anticodon from the A site showed little indication for such specificity. In this article, an expanded set of misacylated tRNAs and two 2′-deoxynucleotide-substituted mRNAs are used to demonstrate the presence of a lower threshold in koff values for aa-tRNA binding to the A site. When a tRNA binds sufficiently well to reach this threshold, additional stabilizing effects due to the esterified amino acid or changes in tRNA sequence are not observed. However, specificity for different amino acid side chains and the tRNA body is observed when tRNA binding is sufficiently weaker than this threshold. We propose that uniform aa-tRNA binding to the A site may be a consequence of a conformational change in the ribosome, induced by the presence of the appropriate combination of contributions from the anticodon, amino acid and tRNA body

Biologically Active Constituents from Salix viminalis Bio-Oil and Their Protective Activity Against Hydrogen Peroxide-Induced Oxidative Stress in Chinese Hamster Ovary Cells

The protective antioxidative effect of the phenolic extract (PE) isolated from Salix viminalis pyrolysis derived bio-oil was shown in vitro on the Chinese hamster ovary (CHO) cells exposed to hydrogen peroxide (H(2)O(2)). Cells pretreated with 0.05 μg/ml PE after exposure to different concentrations of H(2)O(2) (300–900 μM) showed up to 25 % higher viability than the unpretreated ones. The antioxidative effect of PE was also observed in a time-dependent manner. The results were confirmed by visual examination of the specimens using microscopy. Finally, superoxide dismutase (SOD) activity modulation was shown by SOD assay, designed to determine the activity of enzymes removing free radicals

Boundary Layer Transition and Trip Effectiveness on an Apollo Capsule in the JAXA High Enthalpy Shock Tunnel (HIEST) Facility

Computational assessments were performed to size boundary layer trips for a scaled Apollo capsule model in the High Enthalpy Shock Tunnel (HIEST) facility at the JAXA Kakuda Space Center in Japan. For stagnation conditions between 2 MJ/kg and 20 MJ/kg and between 10 MPa and 60 MPa, the appropriate trips were determined to be between 0.2 mm and 1.3 mm high, which provided kappa/delta values on the heatshield from 0.15 to 2.25. The tripped configuration consisted of an insert with a series of diamond shaped trips along the heatshield downstream of the stagnation point. Surface heat flux measurements were obtained on a capsule with a 250 mm diameter, 6.4% scale model, and pressure measurements were taken at axial stations along the nozzle walls. At low enthalpy conditions, the computational predictions agree favorably to the test data along the heatshield centerline. However, agreement becomes less favorable as the enthalpy increases conditions. The measured surface heat flux on the heatshield from the HIEST facility was under-predicted by the computations in these cases. Both smooth and tripped configurations were tested for comparison, and a post-test computational analysis showed that kappa/delta values based on the as-measured stagnation conditions ranged between 0.5 and 1.2. Tripped configurations for both 0.6 mm and 0.8 mm trip heights were able to effectively trip the flow to fully turbulent for a range of freestream conditions

System komunikacji alternatywnej i wspomagającej wraz ze stosowanymi znakami oraz wykorzystanie urządzenia sterowanego za pomocą oczu w Polsce

Patients who do not communicate verbally or speak in an understandable way are a serious problem in providing appropriate care to patients due to a lack of understanding of their needs. Therefore, it is important that nursing staff have the knowledge and skills of alternative and assistive communication to communicate with patients with speech disorders. The purpose of article is to present the current state of knowledge of the alternative and augmentative communication with special consideration the signs used in Poland with a practicular emphasis laid to the revelant description of the eye tracking device. The literature has been reviewed, including also in this relation topics: alternative and augmentative communication, examples of signs used in alternative communication in Poland and communication and eye tracking. Not everyone has the ability to communicate verbally with the environment. In relation to this problem the solution is the alternative and augmentative communication which uses signs and devices to enable the patient to communicate with other people. (JNNN 2020;9(1):39–45)Pacjenci nie komunikujący się werbalnie lub mówiący w sposób niezrozumiały stanowią istotny problem w zapewnieniu właściwej opieki chorych w wyniku braku zrozumienia ich potrzeb. Z tego względu istotne jest posiadanie przez personel pielęgniarski wiedzy i umiejętności w zakresie komunikacji alternatywnej i wspomagającej by porozumieć się z pacjentami z zaburzeniami mowy. Celem pracy jest przedstawienie dotychczasowego stanu wiedzy na temat systemu komunikacji alternatywnej i wspomagającej ze szczególnym uwzgędnieniem wykorzystywanych znaków w Polsce oraz opis urządzenia sterowanego za pomocą oczu. Dokonano przeglądu literatury w zakresie tematów: komunikacja alternatywna i wspomagająca, przykłady znaków stosowanych w komunikacji alternatywnej w Polsce oraz komunikacja za pomocą oczu. Nie każdy człowiek posiada zdolność do komunikowania się werbalnie z otoczeniem. W odniesieniu do tego problemu rozwiązaniem jest komunikacja alternatywna i wspomagająca, która stosuje między innymi znaki oraz urządzenia, dające pacjentowi możliwość komunikowania się z ludźmi. (PNN 2020;9(1):39–45

Aeroheating Measurement of Apollo Shaped Capsule with Boundary Layer Trip in the Free-piston Shock Tunnel HIEST

An aeroheating measurement test campaign of an Apollo capsule model with laminar and turbulent boundary layer was performed in the free-piston shock tunnel HIEST at JAXA Kakuda Space Center. A 250mm-diameter 6.4%-scaled Apollo CM capsule model made of SUS-304 stainless steel was applied in this study. To measure heat flux distribution, the model was equipped with 88 miniature co-axial Chromel-Constantan thermocouples on the heat shield surface of the model. In order to promote boundary layer transition, a boundary layer trip insert with 13 "pizza-box" isolated roughness elements, which have 1.27mm square, were placed at 17mm below of the model geometric center. Three boundary layer trip inserts with roughness height of k=0.3mm, 0.6mm and 0.8mm were used to identify the appropriate height to induce transition. Heat flux records with or without roughness elements were obtained for model angles of attack 28 under stagnation enthalpy between H(sub 0)=3.5MJ/kg to 21MJ/kg and stagnation pressure between P(sub 0)=14MPa to 60MPa. Under the condition above, Reynolds number based on the model diameter was varied from 0.2 to 1.3 million. With roughness elements, boundary layer became fully turbulent less than H(sub 0)=9MJ/kg condition. However, boundary layer was still laminar over H(sub 0)=13MJ/kg condition even with the highest roughness elements. An additional experiment was also performed to correct unexpected heat flux augmentation observed over H(sub 0)=9MJ/kg condition

An evaluation of oligonucleotide-based therapeutic strategies for polyQ diseases

<p>Abstract</p> <p>Background</p> <p>RNA interference (RNAi) and antisense strategies provide experimental therapeutic agents for numerous diseases, including polyglutamine (polyQ) disorders caused by CAG repeat expansion. We compared the potential of different oligonucleotide-based strategies for silencing the genes responsible for several polyQ diseases, including Huntington's disease and two spinocerebellar ataxias, type 1 and type 3. The strategies included nonallele-selective gene silencing, gene replacement, allele-selective SNP targeting and CAG repeat targeting.</p> <p>Results</p> <p>Using the patient-derived cell culture models of polyQ diseases, we tested various siRNAs, and antisense reagents and assessed their silencing efficiency and allele selectivity. We showed considerable allele discrimination by several SNP targeting siRNAs based on a weak G-G or G-U pairing with normal allele and strong G-C pairing with mutant allele at the site of RISC-induced cleavage. Among the CAG repeat targeting reagents the strongest allele discrimination is achieved by miRNA-like functioning reagents that bind to their targets and inhibit their translation without substantial target cleavage. Also, morpholino analog performs well in mutant and normal allele discrimination but its efficient delivery to cells at low effective concentration still remains a challenge.</p> <p>Conclusions</p> <p>Using three cellular models of polyQ diseases and the same experimental setup we directly compared the performance of different oligonucleotide-based treatment strategies that are currently under development. Based on the results obtained by us and others we discussed the advantages and drawbacks of these strategies considering them from several different perspectives. The strategy aimed at nonallele-selective inhibiting of causative gene expression by targeting specific sequence of the implicated gene is the easiest to implement but relevant benefits are still uncertain. The gene replacement strategy that combines the nonallele-selective gene silencing with the expression of the exogenous normal allele is a logical extension of the former and it deserves to be explored further. Both allele-selective RNAi approaches challenge cellular RNA interference machinery to show its ability to discriminate between similar sequences differing in either single base substitutions or repeated sequence length. Although both approaches perform well in allele discrimination most of our efforts are focused on repeat targeting due to its potentially higher universality.</p

Stability of the nonlinear dynamics of an optically injected VCSEL

Automated protocols have been developed to characterize time series data in terms of stability. These techniques are applied to the output power time series of an optically injected vertical cavity surface emitting laser (VCSEL) subject to varying injection strength and optical frequency detuning between master and slave lasers. Dynamic maps, generated from high resolution, computer controlled experiments, identify regions of dynamic instability in the parameter space. © 2012 Optical Society of America

Dental evidence for ontogenetic differences between modern humans and Neanderthals

Humans have an unusual life history, with an early weaning age, long childhood, late first reproduction, short interbirth intervals, and long lifespan. In contrast, great apes wean later, reproduce earlier, and have longer intervals between births. Despite 80 y of speculation, the origins of these developmental patterns in Homo sapiens remain unknown. Because they record daily growth during formation, teeth provide important insights, revealing that australopithecines and early Homo had more rapid ontogenies than recent humans. Dental development in later Homo species has been intensely debated, most notably the issue of whether Neanderthals and H. sapiens differ. Here we apply synchrotron virtual histology to a geographically and temporally diverse sample of Middle Paleolithic juveniles, including Neanderthals, to assess tooth formation and calculate age at death from dental microstructure. We find that most Neanderthal tooth crowns grew more rapidly than modern human teeth, resulting in significantly faster dental maturation. In contrast, Middle Paleolithic H. sapiens juveniles show greater similarity to recent humans. These findings are consistent with recent cranial and molecular evidence for subtle developmental differences between Neanderthals and H. sapiens. When compared with earlier hominin taxa, both Neanderthals and H. sapiens have extended the duration of dental development. This period of dental immaturity is particularly prolonged in modern humans.Human Evolutionary Biolog