Cross-amplification and characterization of polymorphic microsatellite markers from Acacia (Senegalia) mellifera and Acacia brevispica to Acacia senegal (L.) Willd.

Seven polymorphic microsatellite markers isolated from Acacia brevispica and Acacia mellifera were successfully cross-amplified in Acacia senegal. The loci were surveyed for polymorphism using 30 samples. Allelic diversity ranged from 4 (Ame02, Ab06 and Ab18) to 13 (Ab26) per locus. The expected heterozygosity (HE) ranged from 0.543 (Ame02) to 0.868 (Ab26) while observed heterozygosity (HO) ranged from 0.516 (Ame05) to 0.800 (Ame03). Cross amplification of these loci represents a potential source of co-dominant marker and will be useful in the study of genetic diversity, structure, gene flow and breeding systems of this important Acacia species

Prospects for genetic improvement of Acacia senegal: can molecular approaches deliver better gum yield and quality?

In the drylands of Africa, land degradation and soil fertility depletion are major threats to natural resource conservation and food security. A potential solution is to exploit the properties of native N2-fixing legume trees. One candidate is Acacia senegal, the main species producing the internationally traded ‘gum arabic', which also provides a multitude of ecosystem services and supports the livelihoods of many impoverished rural populations in the drylands of sub-Saharan Africa. The development of improved planting stock would help meet the demand for reliable, high quality gum and, at the same time, could enhance income generation and promote wide-scale planting giving environmental benefits for the fragile drylands ecosystem. This requires a strategic improvement programme, but traditional breeding methods require significant time. Molecular approaches are frequently touted as providing a means of increasing efficiency in breeding programmes; however it is as yet unclear whether they can deliver this efficiency, particularly in the regions in which A. senegal is an important crop. Here we review the status of genetic improvement of A. senegal, highlighting modern molecular approaches to advance the breeding efforts for gum and other important traits to enhance adaptability and sustainable management of genetic resources in the changing global climate

Plio-Pleistocene history and phylogeography of Acacia senegal in dry woodlands and savannahs of sub-Saharan tropical Africa: evidence of early colonisation and recent range expansion

Drylands are extensive across sub-Saharan Africa, socio-economically and ecologically important yet highly sensitive to environmental changes. Evolutionary history, as revealed by contemporary intraspecific genetic variation, can provide valuable insight into how species have responded to past environmental and population changes and guide strategies to promote resilience to future changes. The gum arabic tree (Acacia senegal) is an arid-adapted, morphologically diverse species native to the sub-Saharan drylands. We used variation in nuclear sequences (internal transcribed spacer (ITS)) and two types of chloroplast DNA (cpDNA) markers (PCR-RFLP, cpSSR) to study the phylogeography of the species with 293 individuals from 66 populations sampled across its natural range. cpDNA data showed high regional and rangewide haplotypic diversity (hT(cpSSR)=0.903–0.948) and population differentiation (GST(RFLP)=0.700–0.782) with a phylogeographic pattern that indicated extensive historical gene flow via seed dispersal. Haplotypes were not restricted to any of the four varieties, but showed significant geographic structure (GST(cpSSR)=0.392; RST=0.673; RST>RST (permuted)), with the major division separating East and Southern Africa populations from those in West and Central Africa. Phylogenetic analysis of ITS data indicated a more recent origin for the clade including West and Central African haplotypes, suggesting range expansion in this region, possibly during the Holocene humid period. In conjunction with paleobotanical evidence, our data suggest dispersal to West Africa, and across to the Arabian Peninsula and Indian subcontinent, from source populations located in the East African region during climate oscillations of the Plio-Pleistocene

Genetic diversity of endangered sandalwood (Osyris lanceolata) populations in Kenya using ISSR molecular markers

Osyris lanceolata is an evergreen, drought tolerant tropical African tree species belonging to the family Santalaceae. It is endangered, owing to overexploitation for its essential oil used in cosmetics and pharmaceutical industries. The study aimed at determining: (1) the genetic diversity; and (2) the population genetic differentiation in seven key O. lanceolata populations, representing its natural distribution in Kenya. Genotype data for ISSR neutral molecular markers were generated for seven populations of O. lanceolata. The percentage of polymorphic loci (P), ranged from 51% (Wundanyi) to 82% (Gwasii), with a mean of 65%. The mean number of effective alleles (Ne) was 1.430, whereas the Shannon Information Index (I) mean was 0.263. Gwasii population was the most genetically diverse followed by Mt Elgon and least was Wundanyi. The coefficient of differentiation Gst was 0.343. Results of analysis of molecular variance (AMOVA) showed that most of the genetic variation (62%) in O. lanceolata resided within populations. Principal coordinate analysis (PCoA) analysis showed that Baringo population located in the Rift Valley was genetically distinct from the rest of the populations. In conclusion, Gwasii, Mt Elgon and Baringo populations should be delineated for in situ conservation, whereas selection for ex situ conservation should target good trees from all the populations

Rhizobia and other legume nodule bacteria richness in brazilian Araucaria angustifolia forest Riqueza de rizóbios e de outras bactérias de nódulos de leguminosas em floresta de Araucaria angustifolia

The Araucaria Forest is a sub-type of the Atlantic Forest, dominated by Araucaria angustifolia, which is considered an endangered species. The understory has a high diversity of plant species, including several legumes. Many leguminous plants nodulate with rhizobia and fix atmospheric nitrogen, contributing to forest sustainability. This work aimed at bacteria isolation and phenotypic characterization from the root nodules of legumes occurring in Araucaria Forests, at Campos do Jordão State Park, Brazil. Nodule bacteria were isolated in YMA growth media and the obtained colonies were classified according to their growth characteristics (growth rate, color, extra cellular polysaccharide production and pH change of the medium). Data were analyzed by cluster and principal components analysis (PCA). From a total of eleven collected legume species, nine presented nodules, and this is the first report on nodulation of five of these legume species. Two hundred and twelve bacterial strains were isolated from the nodules, whose nodule shapes varied widely and there was a great phenotypic richness among isolates. This richness was found among legume species, individuals of the same species, different nodule shapes and even among isolates of the same nodule. These isolates could be classified into several groups, two up to six according to each legume, most of them different from the used growth standards Rhizobium tropici, Bradyrhizobium elkanii and Burkholderia sp. There is some evidence that these distinct groups may be related to the presence of Burkholderia spp. in the nodules of these legumes.<br>A Floresta de Araucária é um sub-tipo da Mata Atlântica, cujo dossel é dominado por Araucaria angustifolia, uma espécie ameaçada de extinção. O sub-bosque dessa floresta tem alta diversidade, incluindo muitas espécies de leguminosas. Estas plantas podem formar nódulos e fixar nitrogênio atmosférico, contribuindo para a sustentabilidade da floresta. Efetuou-se o levantamento de leguminosas no Parque Estadual de Campos do Jordão e o isolamento de bactérias dos nódulos radiculares destas plantas, seguido da caracterização fenotípica dos isolados. As bactérias dos nódulos foram isoladas em meio de cultura YMA, sendo classificadas de acordo com suas características de crescimento (velocidade de crescimento, cor, produção de polissacarídeo extracelular e mudança de pH do meio). Os resultados foram analisados por análise de agrupamento e análise de componentes principais (PCA). De um total de onze espécies de leguminosas, nove apresentaram nódulos, sendo seis espécies descritas como nodulantes pela primeira vez. Duzentas e doze estirpes de bactérias foram isoladas, havendo variação no formato de nódulos e alta riqueza fenotípica das bactérias isoladas. Essa riqueza ocorreu entre as espécies de leguminosas, entre indivíduos da mesma espécie, entre diferentes formatos de nódulos e, inclusive, entre bactérias isoladas de um mesmo nódulo. As bactérias puderam ser classificadas em vários grupos, de dois a seis de acordo com cada leguminosa, a maioria deles diferentes de Rhizobium tropici, Bradyrhizobium elkanii e Burkholderia sp., que foram utilizados como padrões de crescimento. Existem algumas evidências de que estes grupos distintos podem estar relacionados à presença de Burkholderia spp. nos nódulos destas leguminosas