Theoretical study of electronic damage in single particle imaging experiments at XFELs for pulse durations 0.1 - 10 fs

X-ray free-electron lasers (XFELs) may allow to employ the single particle imaging (SPI) method to determine the structure of macromolecules that do not form stable crystals. Ultrashort pulses of 10 fs and less allow to outrun complete disintegration by Coulomb explosion and minimize radiation damage due to nuclear motion, but electronic damage is still present. The major contribution to the electronic damage comes from the plasma generated in the sample that is strongly dependent on the amount of Auger ionization. Since the Auger process has a characteristic time scale on the order of femtoseconds, one may expect that its contribution will be significantly reduced for attosecond pulses. Here, we study the effect of electronic damage on the SPI at pulse durations from 0.1 fs to 10 fs and in a large range of XFEL fluences to determine optimal conditions for imaging of biological samples. We analyzed the contribution of different electronic excitation processes and found that at fluences higher than $10^{13}$-$10^{15}$ photons/$\mu$m$^2$ (depending on the photon energy and pulse duration) the diffracted signal saturates and does not increase further. A significant gain in the signal is obtained by reducing the pulse duration from 10 fs to 1 fs. Pulses below 1 fs duration do not give a significant gain in the scattering signal in comparison with 1 fs pulses. We also study the limits imposed on SPI by Compton scattering.Comment: 35 pages, 9 figures, 1 table, 2 appendixes, 45 reference

On the Cholesky Decomposition for electron propagator methods: General aspects and application on C60

To treat the electronic structure of large molecules by electron propagator methods we developed a parallel computer program called P-RICD$\Sigma$. The program exploits the sparsity of the two-electron integral matrix by using Cholesky decomposition techniques. The advantage of these techniques is that the error introduced is controlled only by one parameter which can be chosen as small as needed. We verify the tolerance of electron propagator methods to the Cholesky decomposition threshold and demonstrate the power of the P-RICD$\Sigma$ program for a representative example (C60). All decomposition schemes addressed in the literature are investigated. Even with moderate thresholds the maximal error encountered in the calculated electron affinities and ionization potentials amount to a few meV only, and the error becomes negligible for small thresholds.Comment: 30 pages, 6 figures submitted to J.Chem. Phy

Magnetostrictive Neel ordering of the spin-5/2 ladder compound BaMn2O3: distortion-induced lifting of geometrical frustration

The crystal structure and the magnetism of BaMn$_2$O$_3$ have been studied by thermodynamic and by diffraction techniques using large single crystals and powders. BaMn$_2$O$_3$ is a realization of a $S = 5/2$ spin ladder as the magnetic interaction is dominant along 180$^\circ$ Mn-O-Mn bonds forming the legs and the rungs of a ladder. The temperature dependence of the magnetic susceptibility exhibits well-defined maxima for all directions proving the low-dimensional magnetic character in BaMn$_2$O$_3$. The susceptibility and powder neutron diffraction data, however, show that BaMn$_2$O$_3$ exhibits a transition to antiferromagnetic order at 184 K, in spite of a full frustration of the nearest-neighbor inter-ladder coupling in the orthorhombic high-temperature phase. This frustration is lifted by a remarkably strong monoclinic distortion which accompanies the magnetic transition.Comment: 9 pages, 8 figures, 2 tables; in V1 fig. 2 was included twice and fig. 4 was missing; this has been corrected in V

Role of center vortices in chiral symmetry breaking in SU(3) gauge theory

We study the behavior of the AsqTad quark propagator in Landau gauge on SU(3) Yang-Mills gauge configurations under the removal of center vortices. In SU(2) gauge theory, center vortices have been observed to generate chiral symmetry breaking and dominate the infrared behavior of the quark propagator. In contrast, we report a weak dependence on the vortex content of the gauge configurations, including the survival of dynamical mass generation on configurations with vanishing string tension.Comment: 8 pages, 9 figure

Reduction of Guided Acoustic Wave Brillouin Scattering in Photonic Crystal Fibers

Guided Acoustic Wave Brillouin Scattering (GAWBS) generates phase and polarization noise of light propagating in glass fibers. This excess noise affects the performance of various experiments operating at the quantum noise limit. We experimentally demonstrate the reduction of GAWBS noise in a photonic crystal fiber in a broad frequency range using cavity sound dynamics. We compare the noise spectrum to the one of a standard fiber and observe a 10-fold noise reduction in the frequency range up to 200 MHz. Based on our measurement results as well as on numerical simulations we establish a model for the reduction of GAWBS noise in photonic crystal fibers.Comment: 4 pages, 7 figures; added numerical simulations, added reference

Low-temperature ordered phases of the spin-12\frac{1}{2} XXZ chain system Cs2_2CoCl4_4

In this study the magnetic order of the spin-1/2 XXZ chain system Cs$_2$CoCl$_4$ in a temperature range from 50 mK to 0.5 K and in applied magnetic fields up to 3.5 T is investigated by high-resolution measurements of the thermal expansion and the specific heat. Applying magnetic fields along a or c suppresses $T_\textrm{N}$ completely at about 2.1 T. In addition, we find an adjacent intermediate phase before the magnetization saturates close to 2.5 T. For magnetic fields applied along b, a surprisingly rich phase diagram arises. Two additional transitions are observed at critical fields $\mu_0 H_{SF1}\simeq 0.25$ T and $\mu_0 H_{SF2}\simeq 0.7$ T, which we propose to arise from a two-stage spin-flop transition.Comment: 10 pages, 10 figure

A tool to analyze robust stability for constrained nonlinear MPC

A sufficient condition for robust asymptotic stability of nonlinear constrained model predictive control (MPC) is derived with respect to plant/model mismatch. This work is an extension of a previous study on the unconstrained nonlinear MPC problem, and is based on nonlinear programming sensitivity concepts. It addresses the discrete time state feedback problem with all states measured. A strategy to estimate bounds on the plant/model mismatch is proposed that can be used off-line as a tool to assess the extent of model mismatch that can be tolerated to guarantee robust stability.http://www.sciencedirect.com/science/article/B6V4N-4R7F42T-2/1/7729956156701c2970c6a488f929884

Intensity interferometry of single x-ray pulses from a synchrotron storage ring

We report on measurements of second-order intensity correlations at the high brilliance storage ring PETRA III using a prototype of the newly developed Adaptive Gain Integrating Pixel Detector (AGIPD). The detector recorded individual synchrotron radiation pulses with an x-ray photon energy of 14.4 keV and repetition rate of about 5 MHz. The second-order intensity correlation function was measured simultaneously at different spatial separations that allowed to determine the transverse coherence length at these x-ray energies. The measured values are in a good agreement with theoretical simulations based on the Gaussian Schell-model.Comment: 16 pages, 6 figures, 42 reference

Phase diagram and isotope effect in (PrEu)_0.7Ca_0.3CoO_3 cobaltites exhibiting spin-state transitions

We present the study of magnetization, thermal expansion, specific heat, resistivity, and a.c. susceptibility of (Pr$_{1-y}$Eu$_y$)$_{0.7}$Ca$_{0.3}$CoO$_3$ cobaltites. The measurements were performed on ceramic samples with $y = 0.12 - 0.26$ and $y = 1$. Based on these results, we construct the phase diagram, including magnetic and spin-state transitions. The transition from the low- to intermediate-spin state is observed for the samples with $y > 0.18$, whereas for a lower Eu-doping level, there are no spin-state transitions, but a crossover between the ferromagnetic and paramagnetic states occurs. The effect of oxygen isotope substitution along with Eu doping on the magnetic/spin state is discussed. The oxygen-isotope substitution ($^{16}$O by $^{18}$O) is found to shift both the magnetic and spin-state phase boundaries to lower Eu concentrations. The isotope effect on the spin-state transition temperature ($y > 0.18$) is rather strong, but it is much weaker for the transition to a ferromagnetic state ($y < 0.18$). The ferromagnetic ordering in the low-Eu doped samples is shown to be promoted by the Co$^{4+}$ ions, which favor the formation of the intermediate-spin state of neighboring Co$^{3+}$ ions.Comment: 13 pages, including 11 figures, to be published in Phys. Rev.