Chlorinated auxins–how does Arabidopsis thaliana deal with them?

Plant hormones have various functions in plants and play crucial roles in all developmental and differentiation stages. Auxins constitute one of the most important groups with the major representative indole-3-acetic acid (IAA). A halogenated derivate of IAA, 4-chloro-indole-3-acetic acid (4-Cl-IAA), has previously been identified in Pisum sativum and other legumes. While the enzymes responsible for the halogenation of compounds in bacteria and fungi are well studied, the metabolic pathways leading to the production of 4-Cl-IAA in plants, especially the halogenating reaction, are still unknown. Therefore, bacterial flavin-dependent tryptophan-halogenase genes were transformed into the model organism Arabidopsis thaliana. The type of chlorinated indole derivatives that could be expected was determined by incubating wild type A. thaliana with different Cl-tryptophan derivatives. We showed that, in addition to chlorinated IAA, chlorinated IAA conjugates were synthesized. Concomitantly, we found that an auxin conjugate synthetase (GH3.3 protein) from A. thaliana was able to convert chlorinated IAAs to amino acid conjugates in vitro. In addition, we showed that the production of halogenated tryptophan (Trp), indole-3-acetonitrile (IAN) and IAA is possible in transgenic A. thaliana in planta with the help of the bacterial halogenating enzymes. Furthermore, it was investigated if there is an effect (i) of exogenously applied Cl-IAA and Cl-Trp and (ii) of endogenously chlorinated substances on the growth phenotype of the plants

How did the discussion go: Discourse act classification in social media conversations

We propose a novel attention based hierarchical LSTM model to classify discourse act sequences in social media conversations, aimed at mining data from online discussion using textual meanings beyond sentence level. The very uniqueness of the task is the complete categorization of possible pragmatic roles in informal textual discussions, contrary to extraction of question-answers, stance detection or sarcasm identification which are very much role specific tasks. Early attempt was made on a Reddit discussion dataset. We train our model on the same data, and present test results on two different datasets, one from Reddit and one from Facebook. Our proposed model outperformed the previous one in terms of domain independence; without using platform-dependent structural features, our hierarchical LSTM with word relevance attention mechanism achieved F1-scores of 71\% and 66\% respectively to predict discourse roles of comments in Reddit and Facebook discussions. Efficiency of recurrent and convolutional architectures in order to learn discursive representation on the same task has been presented and analyzed, with different word and comment embedding schemes. Our attention mechanism enables us to inquire into relevance ordering of text segments according to their roles in discourse. We present a human annotator experiment to unveil important observations about modeling and data annotation. Equipped with our text-based discourse identification model, we inquire into how heterogeneous non-textual features like location, time, leaning of information etc. play their roles in charaterizing online discussions on Facebook

Capacities of Grassmann channels

A new class of quantum channels called Grassmann channels is introduced and their classical and quantum capacity is calculated. The channel class appears in a study of the two-mode squeezing operator constructed from operators satisfying the fermionic algebra. We compare Grassmann channels with the channels induced by the bosonic two-mode squeezing operator. Among other results, we challenge the relevance of calculating entanglement measures to assess or compare the ability of bosonic and fermionic states to send quantum information to uniformly accelerated frames.Comment: 33 pages, Accepted in Journal of Mathematical Physics; The role of the (fermionic) braided tensor product for quantum Shannon theory, namely capacity formulas, elucidated; The conclusion on the equivalence of Unruh effect for bosons and fermions for quantum communication purposes made clear and even more precis

Short gamma-ray bursts within 200 Mpc

We present a systematic search for short-duration gamma-ray bursts (GRBs) in the local Universe based on 14 yr of observations with the Neil Gehrels Swift Observatory. We cross-correlate the GRB positions with the GLADE catalogue of nearby galaxies, and find no event at a distance ≲100 Mpc and four plausible candidates in the range 100 Mpc ≲ D ≲ 200 Mpc. Although affected by low statistics, this number is higher than the one expected for chance alignments to random galaxies, and possibly suggests a physical association between these bursts and nearby galaxies. By assuming a local origin, we use these events to constrain the range of properties for X-ray counterparts of neutron star mergers. Optical upper limits place tight constraints on the onset of a blue kilonova, and imply either low masses (⁠≲10−3M⊙⁠) of lanthanide-poor ejecta or unfavorable orientations (θ_(obs) ≳ 30 deg). Finally, we derive that the all-sky rate of detectable short GRBs within 200 Mpc is 1.3^(+1.7)_(−0.8) yr⁻¹ (68 per cent confidence interval), and discuss the implications for the GRB outflow structure. If these candidates are instead of cosmological origin, we set a upper limit of ≲2.0 yr⁻¹ (90 per cent confidence interval) to the rate of nearby events detectable with operating gamma-ray observatories, such as Swift and Fermi

Correlated Gravitational Wave and Neutrino Signals from General-Relativistic Rapidly Rotating Iron Core Collapse

We present results from a new set of 3D general-relativistic hydrodynamic simulations of rotating iron core collapse. We assume octant symmetry and focus on axisymmetric collapse, bounce, the early postbounce evolution, and the associated gravitational wave (GW) and neutrino signals. We employ a finite-temperature nuclear equation of state, parameterized electron capture in the collapse phase, and a multi-species neutrino leakage scheme after bounce. The latter captures the important effects of deleptonization, neutrino cooling and heating and enables approximate predictions for the neutrino luminosities in the early evolution after core bounce. We consider 12-solar-mass and 40-solar-mass presupernova models and systematically study the effects of (i) rotation, (ii) progenitor structure, and (iii) postbounce neutrino leakage on dynamics, GW, and, neutrino signals. We demonstrate, that the GW signal of rapidly rotating core collapse is practically independent of progenitor mass and precollapse structure. Moreover, we show that the effects of neutrino leakage on the GW signal are strong only in nonrotating or slowly rotating models in which GW emission is not dominated by inner core dynamics. In rapidly rotating cores, core bounce of the centrifugally-deformed inner core excites the fundamental quadrupole pulsation mode of the nascent protoneutron star. The ensuing global oscillations (f~700-800 Hz) lead to pronounced oscillations in the GW signal and correlated strong variations in the rising luminosities of antineutrino and heavy-lepton neutrinos. We find these features in cores that collapse to protoneutron stars with spin periods <~ 2.5 ms and rotational energies sufficient to drive hyper-energetic core-collapse supernova explosions. Hence, joint GW + neutrino observations of a core collapse event could deliver strong evidence for or against rapid core rotation. [abridged]Comment: 29 pages, 14 figures. Replaced with version matching published versio

Integrated plasmonic circuitry on a vertical-cavity surface-emitting semiconductor laser platform

Integrated plasmonic sources and detectors are imperative in the practical development of plasmonic circuitry for bio- and chemical sensing, nanoscale optical information processing, as well as transducers for high-density optical data storage. Here we show that vertical-cavity surface-emitting lasers (VCSELs) can be employed as an on-chip, electrically pumped source or detector of plasmonic signals, when operated in forward or reverse bias, respectively. To this end, we experimentally demonstrate surface plasmon polariton excitation, waveguiding, frequency conversion and detection on a VCSEL-based plasmonic platform. The coupling efficiency of the VCSEL emission to waveguided surface plasmon polariton modes has been optimized using asymmetric plasmonic nanostructures. The plasmonic VCSEL platform validated here is a viable solution for practical realizations of plasmonic functionalities for various applications, such as those requiring sub-wavelength field confinement, refractive index sensitivity or optical near-field transduction with electrically driven sources, thus enabling the realization of on-chip optical communication and lab-on-a-chip devices

Phosphorus Fertilizer and Stocking Rate Effects on Soil Microbial Biomass of a Long-Term Dairy Farmlet Experiment

The effects of a range of P fertilizer rates and dairy cow stocking rates on microbial biomass carbon and phosphorus were compared in a long-term farmlet trial in southeastern Australia. Pastures were stocked at 2, 3, or 4 cows/ha and received fertilizer at rates of 0, 35, 70 or 140 kgP/ha. There was no effect of either P fertilizer rate or stocking rate on microbial biomass C from 1995 to 1998. Increasing P application rate significantly increased the chloroform-released microbial P flush measured, but stocking rate had no effect on microbial P. There were significant temporal changes, with the seasonal effects of soil temperature and moisture overriding treatment effects on these microbial measurements

The Físchlár digital video system: a digital library of broadcast TV programmes

Físchlár is a system for recording, indexing, browsing and playback of broadcast TV programmes which has been operational on our University campus for almost 18 months. In this paper we give a brief overview of how the system operates, how TV programmes are organised for browse/playback and a short report on the system usage by over 900 users in our University

The private, the public and the hybrid in umbilical cord blood banking – a global perspective

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Recognition without identification, erroneous familiarity, and déjà vu

Déjà vu is characterized by the recognition of a situation concurrent with the awareness that this recognition is inappropriate. Although forms of déjà vu resolve in favor of the inappropriate recognition and therefore have behavioral consequences, typical déjà vu experiences resolve in favor of the awareness that the sensation of recognition is inappropriate. The resultant lack of behavioral modification associated with typical déjà vu means that clinicians and experimenters rely heavily on self-report when observing the experience. In this review, we focus on recent déjà vu research. We consider issues facing neuropsychological, neuroscientific, and cognitive experimental frameworks attempting to explore and experimentally generate the experience. In doing this, we suggest the need for more experimentation and amore cautious interpretation of research findings, particularly as many techniques being used to explore déjà vu are in the early stages of development.PostprintPeer reviewe