Environmental changes in a Mediterranean river: implications for the fish assemblage

This study examined the impacts of climate change on hydrology and fish population dynamics in a river in central Spain. The objectives were to: (i) contextualise long-term trends in the hydrology (1943–2012) and climate (1985–2011) of the study area, and (ii) identify the environmental factors driving fish population dynamics (1998–2012). Air and water temperatures progressively increased over the study period, whereas there were substantial reductions in mean spring river discharges but increases in peak-flow discharges during the spawning and early larval period of endemic cyprinids in recent decades. In particular, the changes in spring river discharges could have fundamental implications for the future status of the endemic cyprinids because this study revealed a positive influence of stable and low flow conditions during the spawning and early larval period (in late spring) on recruitment success (young-of-the-year densities). The density of young-of-the-year Salmo trutta appeared most influenced by flow conditions during fry emergence and the early larval period (in early spring), with the highest densities associated with low peak-flow hydrological pulses. Overall, fish abundances were significantly influenced by the frequency and duration of high and low hydrological pulses, but there were interspecific and ontogenetic differences in their influence. We conclude that although it is widely accepted that global warming should favour cyprinid over salmonid species, future shifts in hydrology due to climate change could negatively affect some cyprinids, including endemic species

The genome sequence of the stone loach, Barbatula barbatula (Linnaeus, 1758)

We present a genome assembly from an individual female Barbatula barbatula (the stone loach; Chordata; Actinopteri; Cypriniformes; Nemacheilidae). The genome sequence is 617.6 megabases in span. Most of the assembly is scaffolded into 25 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 16.64 kilobases in length

Genetic consequences of improved river connectivity in brown trout (Salmo trutta L.)

Fragmentation of watercourses poses a significant threat to biodiversity, particularly for migratory fish species. Mitigation measures such as fishways, have been increasingly implemented to restore river connectivity and support fish migration. The effects of such restoration efforts are typically tested using telemetry and fisheries methods, which do not fully capture the broader population movements that may have important consequences for population viability. We performed a before-and-after control-impact (BACI) study using genetic tools (SNPs) to investigate the effect of a newly implemented fishway, aiming to enhance upstream spawning migration of brown trout (Salmo trutta Linnaeus) in a reservoir with two headwater tributaries fragmented by man-made weirs. Another reservoir with two barrier-free tributaries was also analysed as a control. Our results showed that the isolated brown trout population was spawning in the reservoir before the installation of the fishway, and we found genetic structuring and differentiation between fragmented headwater tributaries before the fishway construction, but not in the control reservoir. Unexpectedly, after the fishway construction we observed signals consistent with increased genetic differentiation between populations of newly recruited juvenile fish in the reservoir tributary and fish in the reservoir. We propose this was caused by newly enabled philopatric behaviour of brown trout to their natal spawning tributary. In contrast, we did not find any genetic changes in the tributary without a fishway or in the barrier-free reservoir system. Given the scarcity of similar studies, we advocate for an increased use of genetic analyses in BACI studies to monitor and evaluate the effect of efforts to restore habitat connectivity and inform future management strategies

Is shape in the eye of the beholder? Assessing landmarking error in geometric morphometric analyses on live fish

Geometric morphometrics is widely used to quantify morphological variation between biological specimens, but the fundamental influence of operator bias on data reproducibility is rarely considered, particularly in studies using photographs of live animals taken under field conditions. We examined this using four independent operators that applied an identical landmarking scheme to replicate photographs of 291 live Atlantic salmon (Salmo salar L.) from two rivers. Using repeated measures tests, we found significant inter-operator differences in mean body shape, suggesting that the operators introduced a systematic error despite following the same landmarking scheme. No significant differences were detected when the landmarking process was repeated by the same operator on a random subset of photographs. Importantly, in spite of significant operator bias, small but statistically significant morphological differences between fish from the two rivers were found consistently by all operators. Pairwise tests of angles of vectors of shape change showed that these between-river differences in body shape were analogous across operator datasets, suggesting a general reproducibility of findings obtained by geometric morphometric studies. In contrast, merging landmark data when fish from each river are digitised by different operators had a significant impact on downstream analyses, highlighting an intrinsic risk of bias. Overall, we show that, even when significant inter-operator error is introduced during digitisation, following an identical landmarking scheme can identify morphological differences between populations. This study indicates that operators digitising at least a sub-set of all data groups of interest may be an effective way of mitigating inter-operator error and potentially enabling data sharing

Specific niche requirements underpin multidecadal range edge stability, but may introduce barriers for climate change adaptation

Aim: To investigate some of the environmental variables underpinning the past and present distribution of an ecosystem engineer near its poleward range edge. Location: >500 locations spanning >7,400 km around Ireland. Methods: We collated past and present distribution records on a known climate change indicator, the reef-forming worm Sabellaria alveolata (Linnaeus, 1767) in a biogeographic boundary region over 182 years (1836–2018). This included repeat sampling of 60 locations in the cooler 1950s and again in the warmer 2000s and 2010s. Using species distribution modelling, we identified some of the environmental drivers that likely underpin S. alveolata distribution towards the leading edge of its biogeographical range in Ireland. Results: Through plotting 981 records of presence and absence, we revealed a discontinuous distribution with discretely bounded sub-populations, and edges that coincide with the locations of tidal fronts. Repeat surveys of 60 locations across three time periods showed evidence of population increases, declines, local extirpation and recolonization events within the range, but no evidence of extensions beyond the previously identified distribution limits, despite decades of warming. At a regional scale, populations were relatively stable through time, but local populations in the cold Irish Sea appear highly dynamic and vulnerable to local extirpation risk. Contemporary distribution data (2013–2018) computed with modelled environmental data identified specific niche requirements which can explain the many distribution gaps, namely wave height, tidal amplitude, stratification index, then substrate type. Main conclusions: In the face of climate warming, such specific niche requirements can create environmental barriers that may prevent species from extending beyond their leading edges. These boundaries may limit a species’ capacity to redistribute in response to global environmental change

Regional IUCN Redlist for Freshwater and Diadromous Fishes of Great Britain (England, Scotland and Wales)

A regional IUCN redlist assessment of extinction risk for freshwater and diadromous fishes in Great Britain, including assessments for Engand, Scotland and Wales. The dataset comprises summary data for assessments under Criteria A-E and narratives to support the the assessment of all native freshwater fish species listed for Great Britain

An integrated decision driven design framework to support the ecological restoration of rivers

A structured and collaborative approach to design and decision‐making in the context of ecological restoration of rivers is developed and illustrated using a case study involving the mitigation of physical barriers to fish migration on the River Trent in the UK. The integrated design and decision-making framework provide a practical workflow model for structuring multi‐attribute decisions, engaging stakeholders, and assembling a design team needed to successfully plan environmental interventions. In our implementation team, members included ecologists, fisheries biologists, government scientists, and representatives of key stakeholder groups. The case study demonstrated a values‐based approach to implementing an ecological restoration plan that addresses some of the long‐standing barrier removal goals associated with the reintroduction of Atlantic salmon and European Union (EU) Habitats Directive listed species European lamprey and River eel. The integrated decision-driven, design framework approach is highlighted by trans-disciplinarily and social learning

Extinction risks and threats facing the freshwater fishes of Britain

1.Extinctions occur naturally in all environments, but rates have accelerated rapidly during the Anthropocene, especially in fresh water. Despite supporting many fish species of conservation importance, there has never been a formal assessment of their extinction risks in Britain, which has impeded their inclusion in relevant legislation and policy. This study therefore used the International Union for the Conservation of Nature (IUCN) Red List of Threatened SpeciesTM Categories and Criteria to conduct the first systematic assessment of the extinction risks and threats facing the native freshwater and diadromous fishes of Britain. Additionally, national assessments were produced for England, Scotland and Wales, reflecting the level at which environmental policy decisions are taken in Britain.2.Seven species were categorised as being threatened with extinction at regional level, with European eel Anguilla anguilla and allis shad Alosa alosa classified as Critically Endangered, Atlantic salmon Salmo salar, vendace Coregonus albula and European whitefish Coregonus lavaretus classified as Endangered, and Arctic charr Salvelinus alpinus and twaite shad Alosa fallax classified as Vulnerable. In addition, burbot Lota lota was classified as Regionally Extinct, ferox trout Salmo ferox was categorised as Data Deficient, and 25 species were categorised as Least Concern. European sturgeon Acipenser sturio and houting Coregonus oxyrinchus, although probably native, qualified as only “vagrants” in fresh water, so were categorised as Not Applicable.3.The assessments provide objective baselines against which future changes can be determined, and a key evidence base to support policy and management decisions for the conservation of freshwater and diadromous fish species and their habitats in Britain. It is recommended that the assessments are repeated every 10 years, which would enable changes in conservation status, the effectiveness of policies and where targeted interventions may be required to be examined using the Red List Index