Efeito de borda e fenologia em Erythroxylum tortuosum Mart. (Erythroxylaceae), uma planta típica do Cerrado brasileiro

The edge of a forest fragment can be considered a zone of transition between the interior of the fragment and the surrounding habitat matrix. Plants along the edge are more exposed to disturbance and microclimate variation than interior plants, resulting in the so-called edge effect. In this study, we compared leaf area, fluctuating asymmetry and chemical (water, nitrogen and tannins) leaf traits between Erythroxylum tortuosum plants inhabiting the edge with those growing in the interior of a cerrado fragment in Brazil. We also describe the temporal variation in the vegetative and reproductive phenological events of E. tortuosum plants throughout the season. Nitrogen, leaf area and fluctuating asymmetry did not differ between the two plant groups. Young leaves of the edge plants had significantly higher levels of tannins and lower levels of water than those of interior plants. We suggest that differences in leaf chemical concentrations between edge and interior plants may occur due to factors such as light intensity, wind, temperature and leaf age rather than plant stress. With respect to plant phenology, most reproductive events occurred during the spring. Leaf buds and young leaves prevailed during the rainy season. In the dry season, however, the vegetative events decreased due to leaf senescence followed by leaf abscission.A borda de um fragmento florestal pode ser considerada uma zona de transição entre o interior do fragmento e a matriz de habitat. As plantas localizadas na borda estão mais expostas a distúrbios e variações microclimáticas do que as plantas do interior, resultando no chamado efeito de borda. Neste estudo, a área foliar, a assimetria flutuante e os caracteres químicos das folhas (água, nitrogênio e taninos) foram comparados entre plantas de Erythroxylum tortuosum situadas na borda e no interior de um fragmento de cerrado brasileiro. A variação temporal de eventos fenológicos vegetativos e reprodutivos de E. tortuosum também foi investigada durante o período de estudo. Nitrogênio, área foliar e assimetria flutuante não diferiram entre os dois grupos de plantas. As folhas jovens das plantas localizadas na borda apresentaram, significativamente, níveis mais altos de taninos e menores níveis de água do que as plantas do interior. Sugere-se que as diferenças nos conteúdos químicos foliares entre as plantas da borda e do interior devem ter ocorrido em razão de fatores como intensidade luminosa, vento, temperatura e idade foliar e não por causa do nível de estresse da planta. Com relação à fenologia, a maioria dos eventos reprodutivos ocorreu durante a primavera. Os botões foliares e as folhas novas prevaleceram durante a estação chuvosa. No entanto, na estação seca, os eventos vegetativos decresceram por causa da senescência das folhas, seguida pela abscisão foliar.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Universidade Estadual Paulista Instituto de Biociências Departamento de BotânicaUniversidade Federal de São Paulo (UNIFESP) Departamento de Ciências BiológicasUNIFESP, Depto. de Ciências BiológicasSciEL

Aboveground biomass variability across intact and degraded forests in the Brazilian Amazon

©2016. American Geophysical Union. All Rights Reserved. Deforestation rates have declined in the Brazilian Amazon since 2005, yet degradation from logging, fire, and fragmentation has continued in frontier forests. In this study we quantified the aboveground carbon density (ACD) in intact and degraded forests using the largest data set of integrated forest inventory plots (n = 359) and airborne lidar data (18,000 ha) assembled to date for the Brazilian Amazon. We developed statistical models relating inventory ACD estimates to lidar metrics that explained 70% of the variance across forest types. Airborne lidar-ACD estimates for intact forests ranged between 5.0 ± 2.5 and 31.9 ± 10.8 kg C m−2. Degradation carbon losses were large and persistent. Sites that burned multiple times within a decade lost up to 15.0 ± 0.7 kg C m−2 (94%) of ACD. Forests that burned nearly 15 years ago had between 4.1 ± 0.5 and 6.8 ± 0.3 kg C m−2 (22–40%) less ACD than intact forests. Even for low-impact logging disturbances, ACD was between 0.7 ± 0.3 and 4.4 ± 0.4 kg C m−2 (4–21%) lower than unlogged forests. Comparing biomass estimates from airborne lidar to existing biomass maps, we found that regional and pantropical products consistently overestimated ACD in degraded forests, underestimated ACD in intact forests, and showed little sensitivity to fires and logging. Fine-scale heterogeneity in ACD across intact and degraded forests highlights the benefits of airborne lidar for carbon mapping. Differences between airborne lidar and regional biomass maps underscore the need to improve and update biomass estimates for dynamic land use frontiers, to better characterize deforestation and degradation carbon emissions for regional carbon budgets and Reduce Emissions from Deforestation and forest Degradation (REDD+)

Wilson Expansion of QCD Propagators at Three Loops: Operators of Dimension Two and Three

In this paper we construct the Wilson short distance operator product expansion for the gluon, quark and ghost propagators in QCD, including operators of dimension two and three, namely, A^2, m^2, m A^2, \ovl{\psi} \psi and m^3. We compute analytically the coefficient functions of these operators at three loops for all three propagators in the general covariant gauge. Our results, taken in the Landau gauge, should help to improve the accuracy of extracting the vacuum expectation values of these operators from lattice simulation of the QCD propagators.Comment: 20 pages, no figure

α-Enolase, an Adhesion-Related Factor of Mycoplasma bovis

Mycoplasma bovis is the causative agent of Mycoplasma bovis-associated disease (MbAD). Although the mechanisms underlying M. bovis adherence to host cells is not clear, recent studies have shown that the cell surface protein α-enolase facilitates bacterial invasion and dissemination in the infected host. In this study, we cloned, expressed and purified recombinant M. bovis α-enolase and induced polyclonal anti-α-enolase antibodies in rabbits. M. bovis α-enolase was detected in the cytoplasmic and membrane protein fractions by these antibodies. Triple immunofluorescence labeling combined with confocal laser scanning microscopy (CLSM) revealed that the plasminogen (Plg) enhanced the adherence of M. bovis to embryonic bovine lung (EBL) cells; the values obtained for adherence and inhibition are consistent with this finding. Interestingly, we found that trace amounts of trypsin acted as a more effective enhancer of cell adherence than Plg. Hence, our data indicate that surface-associated M. bovis α-enolase is an adhesion-related factor of M. bovis that contributes to adherence by binding Plg

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

Background: Once highly abundant, the European eel (Anguilla anguilla L.; Anguillidae; Teleostei) is considered to be critically endangered and on the verge of extinction, as the stock has declined by 90-99% since the 1980s. Yet, the species is poorly characterized at molecular level with little sequence information available in public databases.\ud \ud Results: The first European eel transcriptome was obtained by 454 FLX Titanium sequencing of a normalized cDNA library, produced from a pool of 18 glass eels (juveniles) from the French Atlantic coast and two sites in the Mediterranean coast. Over 310,000 reads were assembled in a total of 19,631 transcribed contigs, with an average length of 531 nucleotides. Overall 36% of the contigs were annotated to known protein/nucleotide sequences and 35 putative miRNA identified.\ud \ud Conclusions: This study represents the first transcriptome analysis for a critically endangered species. EeelBase, a dedicated database of annotated transcriptome sequences of the European eel is freely available at http://compgen.bio.unipd.it/eeelbase. Considering the multiple factors potentially involved in the decline of the European eel, including anthropogenic factors such as pollution and human-introduced diseases, our results will provide a rich source of data to discover and identify new genes, characterize gene expression, as well as for identification of genetic markers scattered across the genome to be used in various applications

Statistical colocalization of genetic risk variants for related autoimmune diseases in the context of common controls.

Determining whether potential causal variants for related diseases are shared can identify overlapping etiologies of multifactorial disorders. Colocalization methods disentangle shared and distinct causal variants. However, existing approaches require independent data sets. Here we extend two colocalization methods to allow for the shared-control design commonly used in comparison of genome-wide association study results across diseases. Our analysis of four autoimmune diseases--type 1 diabetes (T1D), rheumatoid arthritis, celiac disease and multiple sclerosis--identified 90 regions that were associated with at least one disease, 33 (37%) of which were associated with 2 or more disorders. Nevertheless, for 14 of these 33 shared regions, there was evidence that the causal variants differed. We identified new disease associations in 11 regions previously associated with one or more of the other 3 disorders. Four of eight T1D-specific regions contained known type 2 diabetes (T2D) candidate genes (COBL, GLIS3, RNLS and BCAR1), suggesting a shared cellular etiology.MF is funded by the Wellcome Trust (099772). CW and HG are funded by the Wellcome Trust (089989). This work was funded by the JDRF (9–2011–253), the Wellcome Trust (091157) and the National Institute for Health Research (NIHR) Cambridge Biomedical Research Centre. The Cambridge Institute for Medical Research (CIMR) is in receipt of a Wellcome Trust Strategic Award (100140). ImmunoBase.org is supported by Eli Lilly and Company. We thank the UK Medical Research Council and Wellcome Trust for funding the collection of DNA for the British 1958 Birth Cohort (MRC grant G0000934, WT grant 068545/Z/02). DNA control samples were prepared and provided by S. Ring, R. Jones, M. Pembrey, W. McArdle, D. Strachan and P. Burton. Biotec Cluster M4, the Fidelity Biosciences Research Initiative, Research Foundation Flanders, Research Fund KU Leuven, the Belgian Charcot Foundation, Gemeinntzige Hertie Stiftung, University Zurich, the Danish MS Society, the Danish Council for Strategic Research, the Academy of Finland, the Sigrid Juselius Foundation, Helsinki University, the Italian MS Foundation, Fondazione Cariplo, the Italian Ministry of University and Research, the Torino Savings Bank Foundation, the Italian Ministry of Health, the Italian Institute of Experimental Neurology, the MS Association of Oslo, the Norwegian Research Council, the South–Eastern Norwegian Health Authorities, the Australian National Health and Medical Research Council, the Dutch MS Foundation and Kaiser Permanente. Marina Evangelou is thanked for motivating the investigation of the FASLG association.This is the author accepted manuscript. The final version is available at http://www.nature.com/ng/journal/v47/n7/full/ng.3330.html