Dynamical evolution of the Universe in the quark-hadron phase transition and possible nugget formation

We study the dynamics of first-order phase transition in the early Universe when it was $10-50 \mu s$ old with quarks and gluons condensing into hadrons. We look at how the Universe evolved through the phase transition in small as well as large super cooling scenario, specifically exploring the formation of quark nuggets and their possible survival. The nucleation of the hadron phase introduces new distance scales in the Universe, which we estimate along with the hadron fraction, temperature, nucleation time etc. It is of interest to explore whether there is a relic signature of this transition in the form of quark nuggets which might be identified with the recently observed dark objects in our galactic halo and account for the Dark Matter in the Universe at present.Comment: LaTeX file with four postscript figure

Exact Multifractal Spectra for Arbitrary Laplacian Random Walks

Iterated conformal mappings are used to obtain exact multifractal spectra of the harmonic measure for arbitrary Laplacian random walks in two dimensions. Separate spectra are found to describe scaling of the growth measure in time, of the measure near the growth tip, and of the measure away from the growth tip. The spectra away from the tip coincide with those of conformally invariant equilibrium systems with arbitrary central charge $c\leq 1$, with $c$ related to the particular walk chosen, while the scaling in time and near the tip cannot be obtained from the equilibrium properties.Comment: 4 pages, 3 figures; references added, minor correction

Perturbation spectrum in inflation with cutoff

It has been pointed out that the perturbation spectrum predicted by inflation may be sensitive to a natural ultraviolet cutoff, thus potentially providing an experimentally accessible window to aspects of Planck scale physics. A priori, a natural ultraviolet cutoff could take any form, but a fairly general classification of possible Planck scale cutoffs has been given. One of those categorized cutoffs, also appearing in various studies of quantum gravity and string theory, has recently been implemented into the standard inflationary scenario. Here, we continue this approach by investigating its effects on the predicted perturbation spectrum. We find that the size of the effect depends sensitively on the scale separation between cutoff and horizon during inflation.Comment: 6 pages; matches version accepted by PR

DNA hybridization catalysts and catalyst circuits

Practically all of life's molecular processes, from chemical synthesis to replication, involve enzymes that carry out their functions through the catalysis of metastable fuels into waste products. Catalytic control of reaction rates will prove to be as useful and ubiquitous in DNA nanotechnology as it is in biology. Here we present experimental results on the control of the decay rates of a metastable DNA "fuel". We show that the fuel complex can be induced to decay with a rate about 1600 times faster than it would decay spontaneously. The original DNA hybridization catalyst [15] achieved a maximal speed-up of roughly 30. The fuel complex discussed here can therefore serve as the basic ingredient for an improved DNA hybridization catalyst. As an example application for DNA hybridization catalysts, we propose a method for implementing arbitrary digital logic circuits

Signatures of Planck-scale interactions in the cosmic microwave background?

Based on a rather general low-energy effective action (interacting quantum fields in classical curved space-times), we calculate potential signatures of new physics (such as quantum gravity) at ultra-high energies (presumably the Planck scale) in the anisotropies of the cosmic microwave background. These Planck-scale interactions create non-Gaussian contributions, where special emphasis is laid on the three-point function as the most promising observable, which also allows the discrimination between models violating and those obeying Lorentz invariance. PACS: 98.80.Cq, 04.62.+v, 98.70.Vc, 98.80.Qc.Comment: 4 page

Controlled assembly of SNAP-PNA-fluorophore systems on DNA templates to produce fluorescence resonance energy transfer

The SNAP protein is a widely used self-labeling tag that can be used for tracking protein localization and trafficking in living systems. A model system providing controlled alignment of SNAP-tag units can provide a new way to study clustering of fusion proteins. In this work, fluorescent SNAP-PNA conjugates were controllably assembled on DNA frameworks forming dimers, trimers, and tetramers. Modification of peptide nucleic acid (PNA) with the O6-benzyl guanine (BG) group allowed the generation of site-selective covalent links between PNA and the SNAP protein. The modified BG-PNAs were labeled with fluorescent Atto dyes and subsequently chemo-selectively conjugated to SNAP protein. Efficient assembly into dimer and oligomer forms was verified via size exclusion chromatography (SEC), electrophoresis (SDS-PAGE), and fluorescence spectroscopy. DNA directed assembly of homo- and hetero-dimers of SNAP-PNA constructs induced homo- and hetero-FRET, respectively. Longer DNA scaffolds controllably aligned similar fluorescent SNAP-PNA constructs into higher oligomers exhibiting homo-FRET. The combined SEC and homo-FRET studies indicated the 1:1 and saturated assemblies of SNAP-PNA-fluorophore:DNA formed preferentially in this system. This suggested a kinetic/stoichiometric model of assembly rather than binomially distributed products. These BG-PNA-fluorophore building blocks allow facile introduction of fluorophores and/or assembly directing moieties onto any protein containing SNAP. Template directed assembly of PNA modified SNAP proteins may be used to investigate clustering behavior both with and without fluorescent labels which may find use in the study of assembly processes in cells

Modification to the power spectrum in the brane world inflation driven by the bulk inflaton

We compute the cosmological perturbations generated in the brane world inflation driven by the bulk inflaton. Different from the model that the inflation is a brane effect, we exhibit the modification of the power spectrum of scalar perturbations due to the existence of the fifth dimension. With the change of the initial vacuum, we investigate the dependence of the correction of the power spectrum on the choice of the vacuum.Comment: replaced with the revised version, accepted for publication in PR

Thermonuclear Burning Regimes and the Use of SNe Ia in Cosmology

The calculations of the light curves of thermonuclear supernovae are carried out by a method of multi-group radiation hydrodynamics. The effects of spectral lines and expansion opacity are taken into account. The predictions for UBVI fluxes are given. The values of rise time for B and V bands found in our calculations are in good agreement with the observed values. We explain why our results for the rise time have more solid physical justification than those obtained by other authors. It is shown that small variations in the chemical composition of the ejecta, produced in the explosions with different regimes of nuclear burning, can influence drastically the light curve decline in the B band and, to a lesser extent, in the V band. We argue that recent results on positive cosmological constant Lambda, found from the high redshift supernova observations, could be wrong in the case of possible variations of the preferred mode of nuclear burning in the earlier Universe.Comment: 20 pages, 5 figures, presented at the conference "Astronomy at the Eve of the New Century", Puschino, May 17-22, 1999. A few references and a table added, typos correcte

Supernova Ia: a Converging Delayed Detonation Wave

A model of a carbon-oxygen (C--O) presupernova core with an initial mass 1.33 M_\odot, an initial carbon mass fraction 0.27, and with an average mass growth-rate 5 x 10^{-7} M_\odot/yr due to accretion in a binary system was evolved from initial central density 10^9 g/cm^3, and temperature 2.05 x 10^8 K through convective core formation and its subsequent expansion to the carbon runaway at the center. The only thermonuclear reaction contained in the equations of evolution and runaway was the carbon burning reaction 12C + 12C with an energy release corresponding to the full transition of carbon and oxygen (with the same rate as carbon) into 56Ni. As a parameter we take \alpha_c - a ratio of a mixing length to the size of the convective zone. In spite of the crude assumptions, we obtained a pattern of the runaway acceptable for the supernova theory with the strong dependence of its duration on \alpha_c. In the variants with large enough values of \alpha_c=4.0 x 10^{-3} and 3.0 x 10^{-3} the fuel combustion occurred from the very beginning as a prompt detonation. In the range of 2.0 x 10^{-3} >= \alpha_c >= 3.0 x 10^{-4} the burning started as a deflagration with excitation of stellar pulsations with growing amplitude. Eventually, the detonation set in, which was activated near the surface layers of the presupernova (with m about 1.33 M_\odot) and penetrated into the star down to the deflagration front. Excitation of model pulsations and formation of a detonation front are described in detail for the variant with \alpha_c=1.0 x 10^{-3}.Comment: 13 pages, 11 figures, to appear in Astronomy Letter

Streamer Propagation as a Pattern Formation Problem: Planar Fronts

Streamers often constitute the first stage of dielectric breakdown in strong electric fields: a nonlinear ionization wave transforms a non-ionized medium into a weakly ionized nonequilibrium plasma. New understanding of this old phenomenon can be gained through modern concepts of (interfacial) pattern formation. As a first step towards an effective interface description, we determine the front width, solve the selection problem for planar fronts and calculate their properties. Our results are in good agreement with many features of recent three-dimensional numerical simulations.Comment: 4 pages, revtex, 3 ps file