Different responses of soil element contents and their stoichiometry (C: N: P) to different grazing intensity on the Tibetan Plateau shrublands

Potentilla fruticosa, a major alpine shrubland type, is widely distributed across the Tibetan Plateau, and grazing is the most common disturbance in the shrublands of P. fruticosa. However, soil organic carbon (SOC), soil total nitrogen (STN), soil total phosphorus (STP), and their stoichiometry under different grazing intensities were unclear. In our study, we explored SOC, STN, STP, their stoichiometry, and their controlling factors in the grazing disturbance of heavy grazing (HG), moderate grazing (MG), light grazing (LG), and no grazing (NG) conditions in the Tibetan Plateau P. fruticosa shrublands. The grazing intensities were mainly assessed by considering the shrublands’ ground cover, the indicators of the road density, the distance between sampling sites and cowshed or sheep shed, the amounts of cow and sheep dung, and vegetation that had been gnawed and stampeded. Our results indicated that soil physical properties of soil temperature and bulk density have decreasing trends with decreasing grazing intensities from HG to NG. The SOC, STN, STP, and soil C:N and C:P ratios have increasing trends with decreasing grazing intensities from HG to NG, while the changes in soil N:P ratio were relatively stable along grazing intensities. Our results indicated that HG generally had stronger effects on SOC, STN, and soil C:N and C:P ratios than NG, indicating substantial effects of grazing disturbance on biogeochemical cycles of SOC and STN in the shrubland ecosystems. Therefore, for the alpine shrubland of P. fruticosa, the HG should be avoided for sustainable cycling of soil nutrients and the balance of soil nutrient stoichiometry. The grazing types can directly affect plant conditions, and plant conditions can directly affect soil physical and chemical properties and litter standing crops. Finally, soil physicochemical properties and litter standing crop resulting from different grazing intensities directly control SOC, STN, and STP. For the soil stoichiometry, the soil’s physical and chemical properties resulting from different grazing intensities have direct impacts on soil C:P and N:P ratios

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Funder: NCI U24CA211006Abstract: The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC) curated consensus somatic mutation calls using whole exome sequencing (WES) and whole genome sequencing (WGS), respectively. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium, which aggregated whole genome sequencing data from 2,658 cancers across 38 tumour types, we compare WES and WGS side-by-side from 746 TCGA samples, finding that ~80% of mutations overlap in covered exonic regions. We estimate that low variant allele fraction (VAF < 15%) and clonal heterogeneity contribute up to 68% of private WGS mutations and 71% of private WES mutations. We observe that ~30% of private WGS mutations trace to mutations identified by a single variant caller in WES consensus efforts. WGS captures both ~50% more variation in exonic regions and un-observed mutations in loci with variable GC-content. Together, our analysis highlights technological divergences between two reproducible somatic variant detection efforts

Storage and Climatic Controlling Factors of Litter Standing Crop Carbon in the Shrublands of the Tibetan Plateau

Litter is an important component of terrestrial ecosystems and plays a significant role in carbon cycles. Quantifying regional-scale patterns of litter standing crop distribution will improve our understanding of the mechanisms of the terrestrial carbon cycle, and thus enable accurate predictions of the responses of the terrestrial carbon cycle to future climate change. In this study, we aimed to estimate the storage and climatic controlling factors of litter standing crop carbon in the Tibetan Plateau shrublands. We investigated litter standing crop carbon storage and its controlling factors, using a litter survey at 65 shrublands sites across the Tibetan Plateau from 2011&ndash;2013. Ordinary least squares regression analyses were conducted to estimate the relationships between litter standing crop carbon, longitude, and latitude. Multiple linear regressions were used to evaluate relationships among litter standing crop carbon, mean annual temperature (MAT), mean annual precipitation (MAP), and aboveground biomass. The litter standing crop carbon storage was 10.93 Tg C, 7.40 Tg C, and 3.53 Tg C in desert shrublands and alpine shrublands, respectively. Litter standing crop carbon decreased with longitude, and was stable with increasing latitude. Most (80%) of the litter standing crop was stored in branches, with only 20% stored in foliage in the shrublands on the Tibetan Plateau. The conversion coefficient was 0.44 for litter standing crop to litter standing crop carbon, and 0.39 and 0.45 for foliage and branch litter standing crop to foliage and branch litter standing crop carbon, respectively. Aboveground biomass can accelerate more inputs of litter and has a positive effect on litter standing crop carbon. MAT had a positive effect on litter standing crop carbon due to stimulating more input of aboveground biomass. However, MAP had a negative relationship with litter standing crop carbon by enhancing litter decomposition

Above- and Belowground Biomass Allocation in Shrub Biomes across the Northeast Tibetan Plateau

Biomass partitioning has been explored across various biomes. However, the strategies of allocation in plants still remain contentious. This study investigated allocation patterns of above-and belowground biomass at the community level, using biomass survey from the Tibetan Plateau. We explored above-and belowground biomass by conducting three consecutive sampling campaigns across shrub biomes on the northeast Tibetan Plateau during 2011-2013. We then documented the above-ground biomass (AGB), below-ground biomass (BGB) and root: shoot ratio (R/S) and the relationships between R/S and environment factors using data from 201 plots surveyed from 67 sites. We further examined relationships between above-ground and below-ground biomass across various shrub types. Our results indicated that the median values of AGB, BGB, and R/S in Tibetan shrub were 1102.55, 874.91 g m(-2), and 0.85, respectively. R/S showed significant trend with mean annual precipitation (MAP), while decreased with mean annual temperature (MAT). Reduced major axis analysis indicated that the slope of the log-log relationship between above-and belowground biomass revealed a significant difference from 1.0 over space, supporting the optimal hypothesis. Interestingly, the slopes of the allometric relationship between log AGB and log BGB differed significantly between alpine and desert shrub. Our findings supported the optimal theory of above-and belowground biomass partitioning in Tibetan shrub, while the isometric hypothesis for alpine shrub at the community level

Soil Nitrogen Storage, Distribution, and Associated Controlling Factors in the Northeast Tibetan Plateau Shrublands

Although the soils in the Tibetan Plateau shrublands store large amounts of total nitrogen (N), the estimated values remain uncertain because of spatial heterogeneity and a lack of field observations. In this study, we quantified the regional soil N storage, spatial and vertical density distributions, and related climatic controls using 183 soil profiles sampled from 61 sites across the Northeast Tibetan Plateau shrublands during the period of 2011–2013. Our analysis revealed a soil N storage value of 132.40 Tg at a depth of 100 cm, with an average density of 1.21 kg m−2. Soil N density was distributed at greater levels in alpine shrublands, compared with desert shrublands. Spatially, soil N densities decreased from south to north and from east to west, and, vertically, the soil N in the upper 30 and 50 cm accounted for 42% and 64% of the total soil N stocks in the Tibetan Plateau. However, compared with desert shrublands, the surface layers in alpine shrublands exhibited a larger distribution of soil N stocks. Overall, the soil N density in the top 30 cm increased significantly with the mean annual precipitation (MAP) and tended to decrease with the mean annual temperature (MAT), although the dominant climatic controls differed among shrubland types. Specifically, MAP in alpine shrublands, and MAT in desert shrubland, had a weak effect on N density. Soil pH can significant affect soil N density in the Tibetan Plateau shrublands. In conclusion, changes in soil N density should be monitored over the long term to provide accurate information about the effects of climatic factors

The median values of above-ground biomass (AGB), below-ground biomass (BGB) and root: shoot ratio (R/S) for various shrub types on the Tibetan Plateau.

<p>The median values of above-ground biomass (AGB), below-ground biomass (BGB) and root: shoot ratio (R/S) for various shrub types on the Tibetan Plateau.</p

Distribution and controlling factors of soil organic carbon storage in the northeast Tibetan shrublands

PurposeAlthough large amounts of soil organic carbon (SOC) stored in the shrublands, information about SOC storage was little on the Tibetan Plateau. This study aims to evaluate the spatial patterns and storage of SOC in the shrublands and the relationships of climatic variables and soil pH on the Tibetan Plateau.Materials and methodsWe used 177 profiles of soil samples obtained from 59 shrubland sites on the northeast Tibetan Plateau from 2011 to 2013. Ordinary least squares regressions, curve estimation, and multiple linear regressions were used to evaluate controlling factors on SOC stock. Kriging interpolation was used to upscale sit-level measurements to the whole study area.Results and discussionWe found that SOC storage in the northeast Tibetan shrublands was 1.36Pg C in the top 1m with an average SOC stock of 12.38kgm(-2). SOC stock decreased from east to west and south to north but generally increased significantly with the mean annual temperature (MAT) and the mean annual precipitation (MAP), and tended to decrease with soil pH. Although similar relationships were also observed in alpine shrublands, the trends among SOC stock, MAP, and MAT were not observed in desert shrublands. Our results indicate that a reduction in soil pH accelerates the C sequestration potential. Furthermore, global warming contributed to C sequestration in alpine shrublands, specifically, SOC stock increased 8.44kgm(-2) with an increased unit of MAT in alpine shrublands just considering temperature effects. Meanwhile, the C sequestration was different among different regions due to the uneven increases in precipitation. However, in desert shrublands, MAP and MAT did not significantly affect SOC stock.ConclusionsThe results indicate that though a reduction in soil pH could contribute to C sequestration, MAT and MAP have different effects on SOC stock in different Tibetan Plateau shrublands. Increased MAT and MAP were 0.05 degrees C and 1.67mm every year on the Tibetan Plateau, which will increase C sequestration in alpine shrublands, but might have limited impacts on desert shrublands, which help us comprehend soil C cycling in the global climate change scenario

Relationships between above-ground biomass (AGB) and below-ground biomass (BGB) in Tibetan Plateau shrubs.

<p>(a): the slope of the relationship between log AGB and log BGB for overall shrub was 0.61, with 95% confidence intervals of 0.46–0.75. (b): the red line denotes the allocation relationship for alpine shrubs, while the green line indicates the relationship for desert shrubs. The 95% confidence intervals of the slopes for alpine shrubs and desert shrubs were 0.68–1.04 and 0.34–0.78, respectively.</p

Relationships of root: shoot ratio (R/S) with climatic factors for shrub biomes on the Tibetan Plateau.

<p>(a, b) R/S vs. MAT, mean annual temperature, MAP, mean annual precipitation.</p

Precipitation and nitrogen addition enhance biomass allocation to aboveground in an alpine steppe

There are two important allocation hypotheses in plant biomass allocation: allometric and isometric. We tested these two hypotheses in an alpine steppe using plant biomass allocation under nitrogen (N) addition and precipitation (Precip) changes at a community level. An in situ field manipulation experiment was conducted to examine the two hypotheses and the responses of the biomass to N addition (10 g N m(-2) y(-1)) and altered Precip (+/- 50% precipitation) in an alpine steppe on the Qinghai-Tibetan Plateau from 2013 to 2016. We found that the plant community biomass differed in its response to N addition and reduced Precip such that N addition significantly increased aboveground biomass (AGB), while reduced Precip significantly decreased AGB from 2014 to 2016. Moreover, reduced Precip enhanced deep soil belowground biomass (BGB). In the natural alpine steppe, the allocation between AGB and BGB was consistent with the isometric hypotheses. In contrast, N addition or altered Precip enhanced biomass allocation to aboveground, thus leading to allometric growth. More importantly, reduced Precip enhanced biomass allocation into deep soil. Our study provides insight into the responses of alpine steppes to global climate change by linking AGB and BGB allocation