The variation and visualisation of elastic anisotropy in rock forming minerals

Acknowledgements David Healy thanks John Wheeler (Liverpool) for discussions and Ross Angel (Padua) for discussions and a reprint. This paper is dedicated to the memory of John Frederick Nye (1923–2019), whose seminal text book, first published in 1957 (Physical Properties of Crystals: Their Representation by Tensors and Matrices; reprinted as Nye, 1985), has had a huge influence on the lead author. Financial support This research has been supported by the NERC (grant no. NE/N003063/1).Peer reviewedPublisher PD

Enhanced diffusion of Uranium and Thorium linked to crystal plasticity in zircon

The effects of crystal-plasticity on the U-Th-Pb system in zircon is studied by quantitative microstructural and microchemical analysis of a large zircon grain collected from pyroxenite of the Lewisian Complex, Scotland. Electron backscatter diffraction (EBSD) mapping reveals a c.18° variation in crystallographic orientation that comprises both a gradual change in orientation and a series of discrete low-angle (<4°) boundaries. These microstructural data are consistent with crystal-plastic deformation of zircon associated with the formation and migration of dislocations. A heterogeneous pattern of dark cathodoluminescence, with the darkest domains coinciding with low-angle boundaries, mimics the deformation microstructure identified by EBSD. Geochemical data collected using the Sensitive High Resolution Ion MicroProbe (SHRIMP) shows a positive correlation between concentrations of the elements U, Th and Pb (ranging from 20–60 ppm, 30–110 ppm, and 14–36 ppm, respectively) and Th/U ratio (1.13 – 1.8) with the deformation microstructure. The highest measured concentrations and Th/U coincide with low-angle boundaries. This enrichment is interpreted to reflect enhanced bulk diffusion of U and Th due to the formation and migration of high-diffusivity dislocations. (207)Pb/(206)Pb ages for individual analyses show no significant variation across the grain, and define a concordant, combined mean age of 2451 ± 14 Ma. This indicates that the grain was deformed shortly after initial crystallization, most probably during retrograde Inverian metamorphism at amphibolite facies conditions. The elevated Th over U and consistent (207)Pb/(206)Pb ages indicates that deformation most likely occurred in the presence of a late-stage magmatic fluid that drove an increase in the Th/U during deformation. The relative enrichment of Th over U implies that Th/U ratio may not always be a robust indicator of crystallization environment. This study provides the first evidence of deformation-related modification of the U-Th system in zircon and has fundamental implications for the application and interpretation of zircon trace element data

Grain boundary networks and shape preferred orientation : A fresh angle on pattern quantification with GBPaQ

A quantitative understanding of grain shape preferred orientation (SPO) and grain boundary networks as fundamental characteristics of rocks and other crystalline solids is of major interest in geology and material science. Grain boundary networks contain useful information on the deformation history of polycrystalline aggregates, and their diagenetic and metamorphic histories. SPO can have a major impact on material characteristics such as permeability, acoustic velocity and mechanical strength, and on reaction surfaces. The objective of this study is to present a semi-automated toolbox of MATLAB™ scripts, named Grain Boundary Pattern Quantification (GBPaQ), that incorporate different methods for grain boundary pattern quantification for their application to, for example, seismic wave attenuation estimation. GBPaQ uses grain boundary statistics and calculates radial scan line intercepts. In this paper, GBPaQ is tested on two example grain boundary patterns, a granular texture and a foam texture with equant grains, which have been digitally stretched (deformed) to analyse their SPO evolution. The results show that a combination of grain ellipse, grain boundary segment orientation, and grain boundary segment intercept density rose diagrams provide a complete, detailed quantification of grain boundary pattern anisotropy. Grain boundary segment intercept (GBSI) analysis using GBPaQ yields a new grain boundary network parameter – the minimum intensity of grain boundary intercepts (Imin) – which follows a power law relationship with the average axial ratio of grain-fitted ellipses (r) during SPO development. We propose that Imin can be used for the quantitative analysis of SPO strength as a useful tool to assess the deformation history of polycrystalline aggregates. Further studies involving a broader range of different patterns and strain histories are necessary to fully investigate the potential of Imin versus r diagrams

Rapid hydration and weakening of anhydrite under stress : Implications for natural hydration in the Earth’s crust and mantle

Acknowledgements JThis research has been supported by an Aberdeen–Curtin Alliance international postgraduate scholarship, by a Curtin publication grant, and by the Natural Environment Research Council (grant no. NE/T007826/1). Enrique Gomez-Rivas acknowledges the “Ramón y Cajal” fellowship RYC2018-026335-I, funded by the Spanish Ministry of Science and Innovation (MCIN), the State Research Agency of Spain (AEI), and the European Social Fund (ESF)/10.13039/501100011033, as well as the DGICYT research project PID2020-118999GB-I00, funded by the Spanish Ministry of Science and Innovation (MCIN) and State Research Agency of Spain (AEI)/10.13039/501100011033.Peer reviewedPublisher PD

Shocked Quartz in Polymict Impact Breccia from the Upper Cretaceous Yallalie Impact Structure in Western Australia

Yallalie is a ~12 km diameter circular structure located ~200 km north of Perth, Australia. Previous studies have proposed that the buried structure is a complex impact crater based on geophysical data. Allochthonous breccia exposed near the structure has previously been interpreted as proximal impact ejecta; however, no diagnostic indicators of shock metamorphism have been found. Here we report multiple (27) shocked quartz grains containing planar fractures (PFs) and planar deformation features (PDFs) in the breccia. The PFs occur in up to five sets per grain, while the PDFs occur in up to four sets per grain. Universal stage measurements of all 27 shocked quartz grains confirms that the planar microstructures occur in known crystallographic orientations in quartz corresponding to shock compression from 5 to 20 GPa. Proximity to the buried structure (~4 km) and occurrence of shocked quartz indicates that the breccia represents either primary or reworked ejecta. Ejecta distribution simulated using iSALE hydrocode predicts the same distribution of shock levels at the site as those found in the breccia, which supports a primary ejecta interpretation, although local reworking cannot be excluded. The Yallalie impact event is stratigraphically constrained to have occurred in the interval from 89.8 to 83.6 Ma based on the occurrence of Coniacian clasts in the breccia and undisturbed overlying Santonian to Campanian sedimentary rocks. Yallalie is thus the first confirmed Upper Cretaceous impact structure in Australia

Phase Heritage: Deciphering Evidence of Pre-Existing Phases via Inherited Crystallographic Orientations

The concept of 'phase heritage' (e.g., Timms et al., 2017a) involves microstructural recognition of the former presence of a phase that has since transformed to another via evidence encoded in crystallographic orientations. Phase heritage relies on the phenomenon that newly grown (daughter) phases nucleate with particular crystallographic orientation relationships with the preceding (parent) phase. This phenomenon is common for displacive (i.e., shear or martensitic) transformations, well documented in the metals and ceramics literature, but is relatively uncommon in geosciences. This presentation outlines the concepts behind this approach, showcases results from software for automated analysis of EBSD data, and illustrates examples of polymorphic and dissociation phase transformations in the ZrSiO4-ZrO2-SiO2 system, which has particularly useful applications for 'extreme thermobarometry' in impact environments (Timms et al., 2017a)

Real-time, model-based magnetic field correction for moving, wearable MEG

Most neuroimaging techniques require the participant to remain still for reliable recordings to be made. Optically pumped magnetometer (OPM) based magnetoencephalography (OP-MEG) however, is a neuroimaging technique which can be used to measure neural signals during large participant movement (approximately 1 m) within a magnetically shielded room (MSR) (Boto et al., 2018; Seymour et al., 2021). Nevertheless, environmental magnetic fields vary both spatially and temporally and OPMs can only operate within a limited magnetic field range, which constrains participant movement. Here we implement real-time updates to electromagnetic coils mounted on-board of the OPMs, to cancel out the changing background magnetic fields. The coil currents were chosen based on a continually updating harmonic model of the background magnetic field, effectively implementing homogeneous field correction (HFC) in real-time (Tierney et al., 2021). During a stationary, empty room recording, we show an improvement in very low frequency noise of 24 dB. In an auditory paradigm, during participant movement of up to 2 m within a magnetically shielded room, introduction of the real-time correction more than doubled the proportion of trials in which no sensor saturated recorded outside of a 50 cm radius from the optimally-shielded centre of the room. The main advantage of such model-based (rather than direct) feedback is that it could allow one to correct field components along unmeasured OPM axes, potentially mitigating sensor gain and calibration issues (Borna et al., 2022)

Mineralogy and geochemistry of atypical reduction spheroids from the Tumblagooda Sandstone, Western Australia

Funding Information: This research was supported by a CSIRO Mineral Resources studentship, a Curtin University student scholarship and a Minerals Research Institute of Western Australia scholarship. The editors of Sedimentology and three anonymous reviewers are acknowledged for their assistance in improving the manuscript. We would also like to thank Mike Paxman and the Parks and Wildlife Service for permission to sample in Kalbarri National Park. Finally, the authors would like to pay tribute to the memory of Professor Nigel Trewin, whose work laid much of the foundation for this study and many others on the Tumblagooda Sandstone.Peer reviewedPostprin

Evidence for a lineage of virulent bacteriophages that target Campylobacter.

BACKGROUND: Our understanding of the dynamics of genome stability versus gene flux within bacteriophage lineages is limited. Recently, there has been a renewed interest in the use of bacteriophages as 'therapeutic' agents; a prerequisite for their use in such therapies is a thorough understanding of their genetic complement, genome stability and their ecology to avoid the dissemination or mobilisation of phage or bacterial virulence and toxin genes. Campylobacter, a food-borne pathogen, is one of the organisms for which the use of bacteriophage is being considered to reduce human exposure to this organism. RESULTS: Sequencing and genome analysis was performed for two Campylobacter bacteriophages. The genomes were extremely similar at the nucleotide level (> or = 96%) with most differences accounted for by novel insertion sequences, DNA methylases and an approximately 10 kb contiguous region of metabolic genes that were dissimilar at the sequence level but similar in gene function between the two phages. Both bacteriophages contained a large number of radical S-adenosylmethionine (SAM) genes, presumably involved in boosting host metabolism during infection, as well as evidence that many genes had been acquired from a wide range of bacterial species. Further bacteriophages, from the UK Campylobacter typing set, were screened for the presence of bacteriophage structural genes, DNA methylases, mobile genetic elements and regulatory genes identified from the genome sequences. The results indicate that many of these bacteriophages are related, with 10 out of 15 showing some relationship to the sequenced genomes. CONCLUSIONS: Two large virulent Campylobacter bacteriophages were found to show very high levels of sequence conservation despite separation in time and place of isolation. The bacteriophages show adaptations to their host and possess genes that may enhance Campylobacter metabolism, potentially advantaging both the bacteriophage and its host. Genetic conservation has been shown to extend to other Campylobacter bacteriophages, forming a highly conserved lineage of bacteriophages that predate upon campylobacters and indicating that highly adapted bacteriophage genomes can be stable over prolonged periods of time