Students’ Attitudes Towards Education in Biology-Related Disciplines and the Need for Internationalization : A Survey at a Vietnamese University

This survey examined the attitudes of 538 undergraduate students enrolled at a Vietnamese university towards biology-related disciplines. Employing a structured questionnaire, the study explored several aspects, including students' interests in various biology-related fields, their motivations for pursuing these disciplines, their opinions on teaching methods, their aspirations for internationalization and study abroad experiences, the essential skills they believed were crucial for success, and the areas in teaching that required improvement. The survey results indicated that students acknowledged the significance of fields such as medicine and veterinary sciences, with their motivations largely influenced by job prospects and societal needs. Moreover, the results identified specific areas in teaching that students wanted to have improvement, such as laboratory work, practical skills development, fieldwork experiences, and exchange programs, and their attitude towards internationalization and study abroad opportunities, in relations to the factors such as age, gender, grade, and major. The insights gained from this survey can contribute to the enhancement of educational strategies and the creation of an engaging learning environment for students majoring in biology-related disciplines

AMRViz enables seamless genomics analysis and visualization of antimicrobial resistance

We have developed AMRViz, a toolkit for analyzing, visualizing, and managing bacterial genomics samples. The toolkit is bundled with the current best practice analysis pipeline allowing researchers to perform comprehensive analysis of a collection of samples directly from raw sequencing data with a single command line. The analysis results in a report showing the genome structure, genome annotations, antibiotic resistance and virulence profile for each sample. The pan-genome of all samples of the collection is analyzed to identify core- and accessory-genes. Phylogenies of the whole genome as well as all gene clusters are also generated. The toolkit provides a web-based visualization dashboard allowing researchers to interactively examine various aspects of the analysis results. Availability: AMRViz is implemented in Python and NodeJS, and is publicly available under open source MIT license at https://github.com/amromics/amrviz

Efficient inference of large prokaryotic pangenomes with PanTA

Pangenome inference is an indispensable step in bacterial genomics, yet its scalability poses a challenge due to the rapid growth of genomic collections. This paper presents PanTA, a software package designed for constructing pangenomes of large bacterial datasets, showing unprecedented efficiency levels multiple times higher than existing tools. PanTA introduces a novel mechanism to construct the pangenome progressively without rebuilding the accumulated collection from scratch. The progressive mode is shown to consume orders of magnitude less computational resources than existing solutions in managing growing datasets. The software is open source and is publicly available at https://github.com/amromics/panta and at 10.6084/m9.figshare.23724705

AMRomics: a scalable workflow to analyze large microbial genome collections

Whole genome analysis for microbial genomics is critical to studying and monitoring antimicrobial resistance strains. The exponential growth of microbial sequencing data necessitates a fast and scalable computational pipeline to generate the desired outputs in a timely and cost-effective manner. Recent methods have been implemented to integrate individual genomes into large collections of specific bacterial populations and are widely employed for systematic genomic surveillance. However, they do not scale well when the population expands and turnaround time remains the main issue for this type of analysis. Here, we introduce AMRomics, an optimized microbial genomics pipeline that can work efficiently with big datasets. We use different bacterial data collections to compare AMRomics against competitive tools and show that our pipeline can generate similar results of interest but with better performance. The software is open source and is publicly available at https://github.com/amromics/amromics under an MIT license

New Forests and New Forest People in Central Vietnam: The Acacia Boom

Vietnam is the country with the largest area of plantations of Australasian Acacia species (‘wattles’) in South-East Asia. Between 6 and 9% of the national land area is cultivated with tropical wattles (A. auriculiformis, A. mangium and A. × mangiiformis). From the perspective of its promoters, the wattle plantation industry in Vietnam may be seen as a success beyond expectations. We review the origins of this boom and ask what it has done to and for the coun- try’s landscape and people. The chapter combines findings and insights from an interdisciplinary research project in Thừa Thiên Huế province, north-central Vietnam. Research took place across upland and lowland wattle-growing regions, with ethnic minorities as well as the Kinh majority, and with long-term wattle growers as well as new en- trants. It drew on questionnaires, interviews and observations, as well as information from remote sensing, eco- logical surveys and hydrological assessments. We first describe how substantial areas of ‘new forest’ (short-rotation wattle plantations) were created, initially in degraded bushland, but now sometimes through clearing of highly bi- odiverse natural forest stands. These wattle plantations alter local hydrology, soils and biodiversity, and are exposed to risks including soil erosion and plant pathogens. The plantations provide wood chips and timber, supporting rev- enue, employment and a strong forestry industry. Incomes have risen appreciably for many, although unequally, and a class of successful entrepreneurs has emerged. These plantations alter the livelihoods and identities of upland ‘forest people’, historically shifting cultivators, contributing to what might be called ‘new forest people’. Ethnic mi- nority villagers are building new identities around the wattle economy and around their contracts with state forest agencies, seeing themselves increasingly as forest growers and protectors. We conclude by raising some questions regarding the social changes and issues of environmental sustainability linked to this wattle boom

Carbon nanotube four-terminal devices for pressure sensing applications

Carbon nanotubes (CNTs) are of high interest for sensing applications, owing to their superior mechanical strength, high Young’s modulus and low density. In this work, we report on a facile approach for the fabrication of carbon nanotube devices using a four terminal configuration. Oriented carbon nanotube films were pulled out from a CNT forest wafer and then twisted into a yarn. Both the CNT film and yarn were arranged on elastomer membranes/diaphragms which were ar-ranged on a laser cut acrylic frame to form pressure sensors. The sensors were calibrated using a precisely controlled pressure system, showing a large change of the output voltage of approximately 50 mV at a constant supply current of 100µA and under a low applied pressure of 15 mbar. The results indicate the high potential of using CNT films and yarns for pressure sensing applications

Pisachini planthoppers of Vietnam: new records of Pisacha and a new Goniopsarites species from Central Vietnam (Hemiptera, Fulgoromorpha, Nogodinidae)

Two planthopper species of the family Nogodinidae are added to the fauna of Vietnam, both from two localities in Thua Thien-Hue Province: Bach Ma National Park and Phong Dien District. The first species belongs to Goniopsarites Meng, Wang & Wang, 2014, G. mientrunganus Constant & Pham, sp. nov., and the second belongs to Pisacha Distant, 1906, P. yinggensis Meng, Wang & Wang, 2014. Pisacha yinggensis was previously recorded from Hainan Island, China. These new records greatly extend the distribution of both genera, which were known from southern China, Hainan and North Vietnam, to the south, reaching the mid area of Central Vietnam. Sexual dimorphism is reported in P. yinggensis for the first time. Illustrations of habitus and male terminalia of the new species are given as well as distribution maps and photographs of live specimens and their habitat. The family Nogodinidae now comprises nine species in Vietnam, with three of them present in Bach Ma National Park

A Wearable, Bending-Insensitive Respiration Sensor Using Highly Oriented Carbon Nanotube Film

Recently, wearable electronics for health monitoring have been demonstrated with considerable benefits for early-stage disease detection. This article reports a flexible, bending-insensitive, bio-compatible and lightweight respiration sensor. The sensor consists of highly oriented carbon nanotube (HO-CNT) films embedded between electro-spun polyacrylonitrile (PAN) layers. By aligning carbon nanotubes between the PAN layers, the sensor exhibits a high sensitivity towards airflow (340 mV/(m/s)) and excellent flexibility and robustness. In addition, the HO-CNT sensor is insensitive to mechanical bending, making it suitable for wearable applications. We successfully demonstrated the attachment of the sensor to the human philtrum for real-time monitoring of the respiration quality. These results indicate the potential of HO-CNT flow sensor for ubiquitous personal health care applications

Blue intensity from a tropical conifer’s annual rings for climate reconstruction : an ecophysiological perspective

This research was funded by the National Science Foundation of the USA research grants AGS 12-03818 and AGS 13-03976, with additional funding from the Lamont-Doherty Earth Observatory’s Climate Center and Climate and Life initiatives.We developed Blue Intensity (BI) measurements from the crossdated ring sequences of Fokienia hodginsii (of the family Cupressaceae) from central Vietnam. BI has been utilized primarily as an indirect proxy measurement of latewood (LW) density of conifers (i.e., LWBI) from high latitude, temperature-limited boreal forests. As such, BI closely approximates maximum latewood density (MXD) measurements made from soft x-ray. The less commonly used earlywood (EW) BI (EWBI) represents the minimum density of EW and is influenced by the lighter pixels from the vacuoles or lumens of cells. The correlation of our BI measurements with climate, strongest for EWBI, rivals that for total ring width (RW), and we demonstrate that it can be successfully employed as an independent predictor for reconstruction models. EWBI exhibits robust spatial correlations with winter and spring land temperature, sea surface temperature (SST) over the regional domain of ENSO, and the Standardized Precipitation Evapotranspiration Index (SPEI) over Indochina. However, in order to mitigate the effects of color changes at the heartwood – sapwood boundary we calculated ΔBI (EWBI-LWBI), and it too exhibits a significant (p < 0.05), temporally stable response to prior autumn (Oct-Nov) rainfall and winter (December to April) dry season temperature. We interpret this response as reflecting a potential cavitation defense by reducing lumen diameter as a means to safeguard hydraulic conductivity in the stem, and to prevent the xylem from imploding due to negative pressure. This study has wide implications for the further use of BI from the global tropics, though it is unclear how many tropical tree species will be appropriate for use. It seems very likely that other wood anatomical measurements can be combined with BI and RW for climate reconstruction.Publisher PDFPeer reviewe

Discrete seasonal hydroclimate reconstructions over northern Vietnam for the past three and a half centuries

We present a 350-year hydroclimatic year (HY) index for northern Vietnam derived from three discrete seasonal reconstructions from tree rings: an index of autumn rainfall from the earlywood widths of Chinese Douglas fir (Pseudotsuga sinensis), the first such record from this species, and two nearby published Palmer Drought Severity Index (PDSI) reconstructions from cypress (Fokienia hodginsii) tree rings for spring and summer, respectively. Autumn rainfall over the study region constitutes only around 9% of the annual total, but its variability is strongly linked to the strength of the atmospheric gradient over Asia during the transition from the boreal summer to winter monsoons. Deficit or surplus of autumn rainfall enhances or mitigates, respectively, the impact of the annual winter dry season on trees growing on porous karst hillsides. The most protracted HY drought (dry across all seasons) occurred at the turn of the twentieth century at a time of relative quiet, but a mid-to-late eighteenth century multi-year HY drought coincided with a period of great societal turmoil across mainland Southeast Asia and the Tay Son Rebellion in northern Vietnam. A mid-nineteenth century uprising accompanied by a smallpox epidemic, crop failure and famine, occurred during the worst autumn drought of the past two and a half centuries but only moderate drought in spring and summer. The “Great Vietnamese Famine” of the mid-twentieth century was dry only in autumn, with a wet spring and an average summer