Computation of leading-edge vortex flows

The simulation of the leading edge vortex flow about a series of conical delta wings through solution of the Navier-Stokes and Euler equations is studied. The occurrence, the validity, and the usefulness of separated flow solutions to the Euler equations of particular interest. Central and upwind difference solutions to the governing equations are compared for a series of cross sectional shapes, including both rounded and sharp tip geometries. For the rounded leading edge and the flight condition considered, viscous solutions obtained with either central or upwind difference methods predict the classic structure of vortical flow over a highly swept delta wing. Predicted features include the primary vortex due to leading edge separation and the secondary vortex due to crossflow separation. Central difference solutions to the Euler equations show a marked sensitivity to grid refinement. On a coarse grid, the flow separates due to numerical error and a primary vortex which resembles that of the viscous solution is predicted. In contrast, the upwind difference solutions to the Euler equations predict attached flow even for first-order solutions on coarse grids. On a sufficiently fine grid, both methods agree closely and correctly predict a shock-curvature-induced inviscid separation near the leeward plane of symmetry. Upwind difference solutions to the Navier-Stokes and Euler equations are presented for two sharp leading edge geometries. The viscous solutions are quite similar to the rounded leading edge results with vortices of similar shape and size. The upwind Euler solutions predict attached flow with no separation for both geometries. However, with sufficient grid refinement near the tip or through the use of more accurate spatial differencing, leading edge separation results. Once the leading edge separation is established, the upwind solution agrees with recently published central difference solutions to the Euler equations

Investigation into the Biological Importance and Function of Proinsulin C-Peptide

The C-peptide of insulin was thought to be biologically inactive, but recent studies have shown that the C-peptide causes multiple molecular and physiological effects. Evidence has shown that C-peptide binds to a cell surface receptor, probably a G-protein coupled receptor, and that the COOH-terminal pentapeptide is essential for binding and constitutes an active site. For a further understanding of the detailed nature of the physiological effects of C-peptide, the receptor structure needs to be determined. We designed an affinity column using C-peptide to try and gain a better understanding of the biological effects by examining what proteins the affinity column with attached C-peptide would isolate from bovine tissue samples. Since the C-peptide was shown to be internalized in the cytosol and nucleus of kidney cells, we started with cytoplasmic and nuclear tissue lysates obtained from bovine kidney tissue. The isolated proteins were eluted from the beads, and separated by reducing SDS-PAGE. Protein bands of interest were then excised from the gel, digested with trypsin, and analyzed via MALDI-TOF mass spectrometry. We were able to identify a couple of proteins using bovine heart tissue lysates isolated with C-peptide affinity beads. Fatty acid synthase and fatty acyl-CoA ligase were identified. The isolation of both fatty acid synthase and long chain fatty acyl-CoA ligase indicates that C-peptide may play a role in stimulating the production of fatty acids from excess glucose and converting those fatty acids to triacylglycerides for storage inside muscle cells. Our results indicate that C-peptide may be involved in modulating lipid metabolism within cells and may play a role in determining the fate of the excess glucose that enters cells by stimulating the production of fatty acids and conversion of those fatty acids to triacylglycerides for short-term intracellular storage instead of sending the fatty acids to the adipose tissue for long-term storage

Isotopic and genetic methods reveal the role of the gut microbiome in mammalian host essential amino acid metabolism.

Intestinal microbiota perform many functions for their host, but among the most important is their role in metabolism, especially the conversion of recalcitrant biomass that the host is unable to digest into bioavailable compounds. Most studies have focused on the assistance gut microbiota provide in the metabolism of carbohydrates, however, their role in host amino acid metabolism is poorly understood. We conducted an experiment on Mus musculus using 16S rRNA gene sequencing and carbon isotope analysis of essential amino acids (AAESS) to quantify the community composition of gut microbiota and the contribution of carbohydrate carbon used by the gut microbiome to synthesize AAESS that are assimilated by mice to build skeletal muscle tissue. The relative abundances of Firmicutes and Bacteroidetes inversely varied as a function of dietary macromolecular content, with Firmicutes dominating when mice were fed low-protein diets that contained the highest proportions of simple carbohydrates (sucrose). Mixing models estimated that the microbial contribution of AAESS to mouse muscle varied from less than 5% (threonine, lysine, and phenylalanine) to approximately 60% (valine) across diet treatments, with the Firmicute-dominated microbiome associated with the greatest contribution. Our results show that intestinal microbes can provide a significant source of the AAESS their host uses to synthesize structural tissues. The role that gut microbiota play in the amino acid metabolism of animals that consume protein-deficient diets is likely a significant but under-recognized aspect of foraging ecology and physiology

Reductions in the dietary niche of southern sea otters (Enhydra lutris nereis) from the Holocene to the Anthropocene.

The sea otter (Enhydra lutris) is a marine mammal hunted to near extinction during the 1800s. Despite their well-known modern importance as a keystone species, we know little about historical sea otter ecology. Here, we characterize the ecological niche of ancient southern sea otters (E. lutris nereis) using δ13C analysis and δ15N analysis of bones recovered from archaeological sites spanning ~7,000 to 350 years before present (N = 112 individuals) at five regions along the coast of California. These data are compared with previously published data on modern animals (N = 165) and potential modern prey items. In addition, we analyze the δ15N of individual amino acids for 23 individuals to test for differences in sea otter trophic ecology through time. After correcting for tissue-specific and temporal isotopic effects, we employ nonparametric statistics and Bayesian niche models to quantify differences among ancient and modern animals. We find ancient otters occupied a larger isotopic niche than nearly all modern localities; likely reflecting broader habitat and prey use in prefur trade populations. In addition, ancient sea otters at the most southerly sites occupied an isotopic niche that was more than twice as large as ancient otters from northerly regions. This likely reflects greater invertebrate prey diversity in southern California relative to northern California. Thus, we suggest the potential dietary niche of sea otters in southern California could be larger than in central and northern California. At two sites, Año Nuevo and Monterey Bay, ancient otters had significantly higher δ15N values than modern populations. Amino acid δ15N data indicated this resulted from shifting baseline isotope values, rather than a change in sea otter trophic ecology. Our results help in better understanding the contemporary ecological role of sea otters and exemplify the strength of combing zooarchaeological and biological information to provide baseline data for conservation efforts

Agricultural origins and the isotopic identity of domestication in northern China

Stable isotope biochemistry (δ 13C and δ 15N) and radiocarbon dating of ancient human and animal bone document 2 distinct phases of plant and animal domestication at the Dadiwan site in northwest China. The first was brief and nonintensive: at various times between 7900 and 7200 calendar years before present (calBP) people harvested and stored enough broomcorn millet (Panicum miliaceum) to provision themselves and their hunting dogs (Canis sp.) throughout the year. The second, much more intensive phase was in place by 5900 calBP: during this time both broomcorn and foxtail (Setaria viridis spp. italica) millets were cultivated and made significant contributions to the diets of people, dogs, and pigs (Sus sp.). The systems represented in both phases developed elsewhere: the earlier, low-intensity domestic relationship emerged with hunter-gatherers in the arid north, while the more intensive, later one evolved further east and arrived at Dadiwan with the Yangshao Neolithic. The stable isotope methodology used here is probably the best means of detecting the symbiotic human-plantanimal linkages that develop during the very earliest phases of domestication and is thus applicable to the areas where these connections first emerged and are critical to explaining how and why agriculture began in East Asia

Dietary Protein Content and Digestibility Influences Discrimination of Amino Acid Nitrogen Isotope Values in a Terrestrial Omnivorous Mammal

RATIONALE: Ecologists increasingly determine the δ15N values of amino acids (AA) in animal tissue; source AA typically exhibit minor variation between diet and consumer, while trophic AA have increased δ15N values in consumers. Thus, trophic-source δ15N offsets (i.e., Δ15NT-S) reflect trophic position in a food web. However, even minor variation in δ15Nsource AA values may influence the magnitude of offset that represents a trophic step, known as the trophic discrimination factor (i.e., TDFT-S). Diet digestibility and protein content can influence the δ15N values of bulk animal tissue, but the effects on AA Δ15NT-S and TDFT-S in mammals are unknown. METHODS: We fed captive mice (Mus musculus) either (A) a low-fat, high-fiber diet with low, intermediate, or high protein; or (B) a high-fat, low-fiber diet with low or intermediate protein. Mouse muscle and dietary protein were analyzed for bulk tissue δ15N using elemental analyzer-isotope ratio mass spectrometry (EA-IRMS), and were also hydrolyzed into free AA that were analyzed for δ15N using EA-IRMS. RESULTS: As dietary protein increased, Δ15NConsumer-Diet slightly declined for bulk muscle tissue in both experiments, increased for AA in the low-fat, high-fiber diet (A), and remained the same or decreased for AA in the high-fat, low-fiber diet (B). The effects of dietary protein on Δ15 NT-S and on TDFT-S varied by AA but were consistent between variables. CONCLUSIONS: Diets were less digestible and included more protein in Experiment A than in Experiment B. As a result, the mice in Experiment A probably oxidized more AA, resulting in greater Δ15 NConsumer-Diet values. However, the similar responses of Δ15 NT-S and of TDFT-S to diet variation suggest that if diet samples are available, Δ15 NT-S accurately tracks trophic position. If diet samples are not available, the patterns presented here provide a basis to interpret Δ15 NT-S values The trophic-source offset of Pro-Lys did not vary across diets, and therefore may be more reliable for omnivores than other offsets (e.g., Glu-Phe)

Amino acid isotope discrimination factors for a carnivore: physiological insights from leopard sharks and their diet

Stable isotopes are important ecological tools, because the carbon and nitrogen isotopic composition of consumer tissue reflects the diet. Measurements of isotopes of individual amino acids can disentangle the effects of consumer physiology from spatiotemporal variation in dietary isotopic values. However, this approach requires knowledge of assimilation patterns of dietary amino acids. We reared leopard sharks (Triakis semifasciata) on diets of squid (Loligo opalescens; 1250 days; control sharks) or squid then tilapia (Oreochromis sp.; switched at 565 days; experimental sharks) to evaluate consumer-diet discrimination factors for amino acids in muscle tissue. We found that control sharks exhibited lower nitrogen isotope discrimination factors (∆15N) than most previous consumer studies, potentially because of urea recycling. Control sharks also had large carbon isotope discrimination factors (∆13C) for three essential amino acids, suggesting microbial contributions or fractionation upon assimilation. Compared to controls, experimental sharks exhibited higher ∆13C values for four amino acids and ∆15N values for seven amino acids, corresponding with differences between diets in δ13C and δ15N values. This suggests that not all amino acids in experimental sharks had reached steady state, contrary to the conclusion of a bulk isotope study of these sharks. Our results imply that (1) the magnitude of a shift in dietary δ13C and δ15N values temporarily influences the appearance of discrimination factors; (2) slow turnover of amino acid isotopes in elasmobranch muscle precludes inferences about seasonal dietary changes; (3) elasmobranch discrimination factors for amino acids may be affected by urea recycling and microbial contributions of amino acids