Tracking environmental trends in the Great Bay Estuarine System through comparisons of historical and present-day green and red algal community structure and nutrient content

Monitoring macroalgae populations is an effective means of detecting long term water quality changes in estuarine systems. To investigate the environmental status of New Hampshire’s Great Bay National Estuarine Research Reserve, this study assessed the abundance/distribution of macrophytes, particularly Gracilaria and Ulva species, relative to eutrophication patterns; compared historical (1970s-1990s) and current algal biomass/cover at several sites; and compared Ulva and Gracilaria tissue N/P content to ambient and historical levels. Ulva and Gracilaria biomass/cover have increased significantly at several sites. Cover by Ulva species, at seasonal maxima, was over 90 times the value recorded in the 1970s at Lubberland Creek, and exceeded 50% at all sites in the upper estuary. Gracilaria cover was greater than 25% at Depot Road in the upper estuary, whereas the historical measure was 1%. Sequencing of ITS2, rbcL and CO1 revealed the presence of previously undetected Ulva and Gracilaria species, including Gracilaria vermiculophylla (Ohmi) Papenfuss, an invasive species of Asian origin. Gracilaria vermiculophylla has exceeded G. tikvahiae as the dominant Gracilaria species in Great Bay. Historical voucher specimen screening suggests G. vermiculophylla was introduced as recently as 2003. Nitrogen and phosphorus levels are elevated in the estuary. We should expect continued seasonal nuisance algal blooms

Test of Information Theory on the Boltzmann Equation

We examine information theory using the steady-state Boltzmann equation. In a nonequilibrium steady-state system under steady heat conduction, the thermodynamic quantities from information theory are calculated and compared with those from the steady-state Boltzmann equation. We have found that information theory is inconsistent with the steady-state Boltzmann equation.Comment: 12 page

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

BACKGROUND: Retrotransposons are an abundant component of eukaryotic genomes. The high quality of the Arabidopsis thaliana genome sequence makes it possible to comprehensively characterize retroelement populations and explore factors that contribute to their genomic distribution. RESULTS: We identified the full complement of A. thaliana long terminal repeat (LTR) retroelements using RetroMap, a software tool that iteratively searches genome sequences for reverse transcriptases and then defines retroelement insertions. Relative ages of full-length elements were estimated by assessing sequence divergence between LTRs: the Pseudoviridae were significantly younger than the Metaviridae. All retroelement insertions were mapped onto the genome sequence and their distribution was distinctly non-uniform. Although both Pseudoviridae and Metaviridae tend to cluster within pericentromeric heterochromatin, this association is significantly more pronounced for all three Metaviridae sublineages (Metavirus, Tat and Athila). Among these, Tat and Athila are strictly associated with pericentromeric heterochromatin. CONCLUSIONS: The non-uniform genomic distribution of the Pseudoviridae and the Metaviridae can be explained by a variety of factors including target-site bias, selection against integration into euchromatin and pericentromeric accumulation of elements as a result of suppression of recombination. However, comparisons based on the age of elements and their chromosomal location indicate that integration-site specificity is likely to be the primary factor determining distribution of the Athila and Tat sublineages of the Metaviridae. We predict that, like retroelements in yeast, the Athila and Tat elements target integration to pericentromeric regions by recognizing a specific feature of pericentromeric heterochromatin

The Structure of Urinary Catheter Encrusting Bacterial Biofilms

A major complication of long-term urethral catheterization is catheter blockage by encrustation. We have examined 20 encrusted catheters and in each case crystal formation was associated with the presence of bacterial biofilms on the luminal surfaces. Scanning electron microscopy and X-ray microanalysis indicated the presence of struvite and hydroxyapatite in the biofilms. Urease producing bacteria were colonizing 16 of the catheters. Proteus mirabilis was the commonest species being recovered from ten of the catheters. These results support the hypothesis that catheter encrustation has a similar etiology to that of infection-induced urinary stones and confirm that the important target for any attempt to control catheter encrustations is Pr. mirabilis

Measuring Nonequilibrium Temperature of Forced Oscillators

The meaning of temperature in nonequilibrium thermodynamics is considered by using a forced harmonic oscillator in a heat bath, where we have two effective temperatures for the position and the momentum, respectively. We invent a concrete model of a thermometer to testify the validity of these different temperatures from the operational point of view. It is found that the measured temperature depends on a specific form of interaction between the system and a thermometer, which means the zeroth law of thermodynamics cannot be immediately extended to nonequilibrium cases.Comment: 8 page

Some thoughts about nonequilibrium temperature

The main objective of this paper is to show that, within the present framework of the kinetic theoretical approach to irreversible thermodynamics, there is no evidence that provides a basis to modify the ordinary Fourier equation relating the heat flux in a non-equilibrium steady state to the gradient of the local equilibrium temperature. This fact is supported, among other arguments, through the kinetic foundations of generalized hydrodynamics. Some attempts have been recently proposed asserting that, in the presence of non-linearities of the state variables, such a temperature should be replaced by the non-equilibrium temperature as defined in Extended Irreversible Thermodynamics. In the approximations used for such a temperature there is so far no evidence that sustains this proposal.Comment: 13 pages, TeX, no figures, to appear in Mol. Phy

Information theory in the study of anisotropic radiation

Information theory is used to perform a thermodynamic study of non equilibrium anisotropic radiation. We limit our analysis to a second-order truncation of the moments, obtaining a distribution function which leads to a natural closure of the hierarchy of radiative transfer equations in the so-called variable Eddington factor scheme. Some Eddington factors appearing in the literature can be recovered as particular cases of our two-parameter Eddington factor. We focus our attention in the study of the thermodynamic properties of such systems and relate it to recent nonequilibrium thermodynamic theories. Finally we comment the possibility of introducing a nonequilibrium chemical potential for photons.Comment: 1 eps figure upon request by e-mail, to appear in Journal of Physics

Evidence for a change in the nuclear mass surface with the discovery of the most neutron-rich nuclei with 17<Z <25

The results of measurements of the production of neutron-rich nuclei by the fragmentation of a 76-Ge beam are presented. The cross sections were measured for a large range of nuclei including fifteen new isotopes that are the most neutron-rich nuclides of the elements chlorine to manganese (50-Cl, 53-Ar, 55,56-K, 57,58-Ca, 59,60,61-Sc, 62,63-Ti, 65,66-V, 68-Cr, 70-Mn). The enhanced cross sections of several new nuclei relative to a simple thermal evaporation framework, previously shown to describe similar production cross sections, indicates that nuclei in the region around 62-Ti might be more stable than predicted by current mass models and could be an indication of a new island of inversion similar to that centered on 31-Na.Comment: 4 pages, 3 figures, to be published in Physical Review Letters, 200