Purification and characterization of chitinase from Alcaligenes faecalis AU02 by utilizing marine wastes and its antioxidant activity

Marine waste is an abundant renewable source for the recovery of several value added metabolites with potential industrial applications. This study describes the production of chitinase on marine waste, with the subsequent use of the same marine waste for the extraction of antioxidants. A chitinase-producing bacterium isolated from seafood effluent was identified as Alcaligenes faecalis AU02. Optimal chitinase production was obtained in culture conditions of 37°C for 72 h in 100 ml medium containing 1% shrimp and crab shell powder (1:1) (w/v), 0.1% K2HPO4, and 0.05% MgSO4·7H2O. The molecular weight of chitinase was determined by SDS-PAGE to be 36 kDa. The optimum pH, temperature, pH stability, and thermal stability of chitinase were about 8, 37°C, 5–12, and 40–80°C, respectively. The antioxidant activity of A. faecalis AU02 culture supernatant was determined through scavenging ability on 1,1-diphenyl-2-picrylhydrazyl (DPPH) as 84%, and the antioxidant compound was characterized by TLC and its FT-IR spectrum. The present study proposed that marine wastes can be utilized to generate a high-value-added product and that pharmacological studies can extend its use to the field of medicine

Characterization of an extracellular lipase and its chaperone from Ralstonia eutropha H16

Lipase enzymes catalyze the reversible hydrolysis of triacylglycerol to fatty acids and glycerol at the lipid–water interface. The metabolically versatile Ralstonia eutropha strain H16 is capable of utilizing various molecules containing long carbon chains such as plant oil, organic acids, or Tween as its sole carbon source for growth. Global gene expression analysis revealed an upregulation of two putative lipase genes during growth on trioleate. Through analysis of growth and activity using strains with gene deletions and complementations, the extracellular lipase (encoded by the lipA gene, locus tag H16_A1322) and lipase-specific chaperone (encoded by the lipB gene, locus tag H16_A1323) produced by R. eutropha H16 was identified. Increase in gene dosage of lipA not only resulted in an increase of the extracellular lipase activity, but also reduced the lag phase during growth on palm oil. LipA is a non-specific lipase that can completely hydrolyze triacylglycerol into its corresponding free fatty acids and glycerol. Although LipA is active over a temperature range from 10 °C to 70 °C, it exhibited optimal activity at 50 °C. While R. eutropha H16 prefers a growth pH of 6.8, its extracellular lipase LipA is most active between pH 7 and 8. Cofactors are not required for lipase activity; however, EDTA and EGTA inhibited LipA activity by 83 %. Metal ions Mg[superscript 2+], Ca[superscript 2+], and Mn[superscript 2+] were found to stimulate LipA activity and relieve chelator inhibition. Certain detergents are found to improve solubility of the lipid substrate or increase lipase-lipid aggregation, as a result SDS and Triton X-100 were able to increase lipase activity by 20 % to 500 %. R. eutropha extracellular LipA activity can be hyper-increased, making the overexpression strain a potential candidate for commercial lipase production or in fermentations using plant oils as the sole carbon source.Malaysia-MIT Biotechnology Partnership Programm

Chitin degrading potential of bacteria from extreme and moderate environment

248-254<span style="font-size:14.0pt;line-height: 115%;font-family:" times="" new="" roman";mso-fareast-font-family:"times="" roman";="" mso-ansi-language:en-in;mso-fareast-language:en-in;mso-bidi-language:hi"="" lang="EN-IN">Five hundred chitin-degrading bacteria were isolated from 20 different locations. High percentage of potent chitin degraders was obtained from po lluted regions. Potent chitin- degrading bacteria were selected by primary and seondary screening. Among the selected isolates 78% were represented by the genus Streptomyces. Majority of the isolates had good chitinolysis relative to the growth although isolates with better growth were also seen. Such isolates are important for the production of SCP from chitinous wastes. The potent iso lates belonged to the genera Streptomyces, Kitasatosporia, Saccharopolyspora, Nocardioides, Nocardiopsis, Herbidospora, Micromonospora, Microbispora, ,Actinoplanes, Serratia, Bacillus and Pseudomonas. This study forms a comprehensive base for the study of diversity of chitinolytic systems of  bacteria.</span

<span style="font-size:11.0pt;font-family: "Times New Roman","serif";mso-fareast-font-family:"Times New Roman";mso-bidi-font-family: Mangal;letter-spacing:-.1pt;mso-ansi-language:EN-GB;mso-fareast-language:EN-US; mso-bidi-language:HI" lang="EN-GB">Comparative studies on ability of <i style="mso-bidi-font-style: normal">N</i>-acetylated chitooligosaccharides to scaven<span style="font-size:11.0pt;font-family:"Times New Roman","serif"; mso-fareast-font-family:"Times New Roman";mso-bidi-font-family:Mangal; mso-ansi-language:EN-GB;mso-fareast-language:EN-US;mso-bidi-language:HI" lang="EN-GB">ge reactive oxygen species and protect DNA from oxidative damage</span></span>

186-192<span style="font-size:11.0pt;font-family: " times="" new="" roman","serif";mso-fareast-font-family:"times="" roman";mso-bidi-font-family:="" mangal;mso-ansi-language:en-gb;mso-fareast-language:en-us;mso-bidi-language:="" hi"="" lang="EN-GB">Antioxidants have key role in scavenging free radicals and have been considered as dietary part of health conscious population for reducing the risk of many diseases. In the present study, commercially available N-acetylated chitooligosaccharides [(GlcNAc)n; n=2, 3, 5, 6] were studied for their antioxidant ability against superoxide, hydroxyl, DPPH radicals and H2O2 by various radical scavenging assays. The N-acetylated chitooligosaccharides exhibited radical scavenging activities in the range of 49.1-63% for hydroxyl radical and 41-53.3% for superoxide radical. Their antioxidant ability was at par or better than standard antioxidants like butylated hydroxyanisole and mannitol. These <i style="mso-bidi-font-style: normal">N-acetylated chitooligosaccharides were also evaluated for their ability to prevent oxidative DNA damage in peripheral blood mononuclear cells exposed to H2O2. (GlcNAc)2, (GlcNAc)3, (GlcNAc)5 and (GlcNAc)6 decreased the oxidative DNA damage due to H2O2 by 59.5, 55.5, 22.9 and 4.9%, respectively. This antioxidative potential of <i style="mso-bidi-font-style: normal">N-acetylated chitooligosaccharides can be extended to beneficial health applications.</span

Data in support of the comparative genome analysis of Lysinibacillus B1-CDA, a bacterium that accumulates arsenics

This study is a part of our long term project on bioremediation of toxic metals and other pollutants for protection of human health and the environment from severe contamination. The information and results presented in this data article are based on both in vitro and in silico experiments. in vitro experiments were used to investigate the presence of arsenic responsive genes in a bacterial strain B1-CDA that is highly resistant to arsenics. However, in silico studies were used to annotate the function of the metal responsive genes. By using this combined study consisting of in vitro and in silico experiments we have identified and characterized specific genes from B1-CDA that can be used as a potential tool for removal of arsenics as well as other heavy metals from the contaminated environment