Factorization of Seiberg-Witten Curves and Compactification to Three Dimensions

We continue our study of nonperturbative superpotentials of four-dimensional N=2 supersymmetric gauge theories with gauge group U(N) on R^3 x S^1, broken to N=1 due to a classical superpotential. In a previous paper, hep-th/0304061, we discussed how the low-energy quantum superpotential can be obtained by substituting the Lax matrix of the underlying integrable system directly into the classical superpotential. In this paper we prove algebraically that this recipe yields the correct factorization of the Seiberg-Witten curves, which is an important check of the conjecture. We will also give an independent proof using the algebraic-geometrical interpretation of the underlying integrable system.Comment: laTeX, 14 pages, uses AMSmat

The Whitham Deformation of the Dijkgraaf-Vafa Theory

We discuss the Whitham deformation of the effective superpotential in the Dijkgraaf-Vafa (DV) theory. It amounts to discussing the Whitham deformation of an underlying (hyper)elliptic curve. Taking the elliptic case for simplicity we derive the Whitham equation for the period, which governs flowings of branch points on the Riemann surface. By studying the hodograph solution to the Whitham equation it is shown that the effective superpotential in the DV theory is realized by many different meromorphic differentials. Depending on which meromorphic differential to take, the effective superpotential undergoes different deformations. This aspect of the DV theory is discussed in detail by taking the N=1^* theory. We give a physical interpretation of the deformation parameters.Comment: 35pages, 1 figure; v2: one section added to give a physical interpretation of the deformation parameters, one reference added, minor corrections; v4: minor correction

STATISTICAL ISSUES IN THE ANALYSIS OF MICROBIAL COMMUNITIES IN SOIL

Corn and soybean production dominates the agricultural systems of the mid-western United States. Studies have found that when a single crop species is grown continually, without the rotation of other crops, yield decline occurs. At present, this phenomenon, remains poorly understood, but there are possible links to microbial community dynamics in the associated rhizosphere soil. In this study, corn plants were grown in disturbed and undisturbed soils with a 24 year history of growth as a mono culture crop or two crops grown in annual rotation. Characteristic profiles of the microbial communities were obtained by denaturing gradient gel electrophoresis of polymerase chain reaction amplified 16S rDNA from soil extracted DNA. This problem is approached as the statistical analysis of high-dimensional multivariate binary data with an emphasis on modeling and variable selection

On the Baryonic Branch Root of N=2 MQCD

We investigate the brane exchange in the framework of N=2 MQCD by using a specific family of M fivebrane configurations relevant to describe the baryonic branch root. An exchange of M fivebranes is realized in the Taub-NUT geometry and controlled by the moduli parameter of the configurations. This family also provides two different descriptions of the root. These descriptions are examined carefully using the Taub-NUT geometry. It is shown that they have the same baryonic branch and are shifted each other by the brane exchange.Comment: LaTeX, 25 pages, 7 figures, references adde

Melting Crystal, Quantum Torus and Toda Hierarchy

Searching for the integrable structures of supersymmetric gauge theories and topological strings, we study melting crystal, which is known as random plane partition, from the viewpoint of integrable systems. We show that a series of partition functions of melting crystals gives rise to a tau function of the one-dimensional Toda hierarchy, where the models are defined by adding suitable potentials, endowed with a series of coupling constants, to the standard statistical weight. These potentials can be converted to a commutative sub-algebra of quantum torus Lie algebra. This perspective reveals a remarkable connection between random plane partition and quantum torus Lie algebra, and substantially enables to prove the statement. Based on the result, we briefly argue the integrable structures of five-dimensional $\mathcal{N}=1$ supersymmetric gauge theories and $A$-model topological strings. The aforementioned potentials correspond to gauge theory observables analogous to the Wilson loops, and thereby the partition functions are translated in the gauge theory to generating functions of their correlators. In topological strings, we particularly comment on a possibility of topology change caused by condensation of these observables, giving a simple example.Comment: Final version to be published in Commun. Math. Phys. . A new section is added and devoted to Conclusion and discussion, where, in particular, a possible relation with the generating function of the absolute Gromov-Witten invariants on CP^1 is commented. Two references are added. Typos are corrected. 32 pages. 4 figure

The machinery at endoplasmic reticulum-plasma membrane contact sites contributes to spatial regulation of multiple Legionella effector proteins

The Dot/Icm system of the intracellular pathogen Legionella pneumophila has the capacity to deliver over 270 effector proteins into host cells during infection. Important questions remain as to spatial and temporal mechanisms used to regulate such a large array of virulence determinants after they have been delivered into host cells. Here we investigated several L. pneumophila effector proteins that contain a conserved phosphatidylinositol-4-phosphate (PI4P)-binding domain first described in the effector DrrA (SidM). This PI4P binding domain was essential for the localization of effectors to the early L. pneumophila-containing vacuole (LCV), and DrrA-mediated recruitment of Rab1 to the LCV required PI4P-binding activity. It was found that the host cell machinery that regulates sites of contact between the plasma membrane (PM) and the endoplasmic reticulum (ER) modulates PI4P dynamics on the LCV to control localization of these effectors. Specifically, phosphatidylinositol-4-kinase IIIalpha (PI4KIIIalpha) was important for generating a PI4P signature that enabled L. pneumophila effectors to localize to the PM-derived vacuole, and the ER-associated phosphatase Sac1 was involved in metabolizing the PI4P on the vacuole to promote the dissociation of effectors. A defect in L. pneumophila replication in macrophages deficient in PI4KIIIalpha was observed, highlighting that a PM-derived PI4P signature is critical for biogenesis of a vacuole that supports intracellular multiplication of L. pneumophila. These data indicate that PI4P metabolism by enzymes controlling PM-ER contact sites regulate the association of L. pneumophila effectors to coordinate early stages of vacuole biogenesis

On Effective Superpotentials and Compactification to Three Dimensions

We study four dimensional N=2 SO/SP supersymmetric gauge theory on R^3\times S^1 deformed by a tree level superpotential. We will show that the exact superpotential can be obtained by making use of the Lax matrix of the corresponding integrable model which is the periodic Toda lattice. The connection between vacua of SO(2N) and SO(2kN-2k+2) can also be seen in this framework. Similar analysis can also be applied for SO(2N+1) and SP(2N).Comment: 18 pages, latex file, v2: typos corrected, refs adde

The Extreme Kerr Throat Geometry: A Vacuum Analog of AdS_2 x S^2

We study the near horizon limit of a four dimensional extreme rotating black hole. The limiting metric is a completely nonsingular vacuum solution, with an enhanced symmetry group SL(2,R) x U(1). We show that many of the properties of this solution are similar to the AdS_2 x S^2 geometry arising in the near horizon limit of extreme charged black holes. In particular, the boundary at infinity is a timelike surface. This suggests the possibility of a dual quantum mechanical description. A five dimensional generalization is also discussed.Comment: 21 page

Supersymmetry Flows, Semi-Symmetric Space Sine-Gordon Models And The Pohlmeyer Reduction

We study the extended supersymmetric integrable hierarchy underlying the Pohlmeyer reduction of superstring sigma models on semi-symmetric superspaces F/G. This integrable hierarchy is constructed by coupling two copies of the homogeneous integrable hierarchy associated to the loop Lie superalgebra extension f of the Lie superalgebra f of F and this is done by means of the algebraic dressing technique and a Riemann-Hilbert factorization problem. By using the Drinfeld-Sokolov procedure we construct explicitly, a set of 2D spin \pm1/2 conserved supercharges generating supersymmetry flows in the phase space of the reduced model. We introduce the bi-Hamiltonian structure of the extended homogeneous hierarchy and show that the two brackets are of the Kostant-Kirillov type on the co-adjoint orbits defined by the light-cone Lax operators L_\pm. By using the second symplectic structure, we show that these supersymmetries are Hamiltonian flows, we compute part of the supercharge algebra and find the supersymmetric field variations they induce. We also show that this second Poisson structure coincides with the canonical Lorentz-Invariant symplectic structure of the WZNW model involved in the Lagrangian formulation of the extended integrable hierarchy, namely, the semi-symmetric space sine-Gordon model (SSSSG), which is the Pohlmeyer reduced action functional for the transverse degrees of freedom of superstring sigma models on the cosets F/G. We work out in some detail the Pohlmeyer reduction of the AdS_2xS^2 and the AdS_3xS^3 superstrings and show that the new conserved supercharges can be related to the supercharges extracted from 2D superspace. In particular, for the AdS_2xS^2 example, they are formally the same.Comment: V2: Two references added, V3: Modifications in section 2.6, V4: Published versio