Finding unique PCR products on distributed databases

Thanks to the development of genetic engineering, various kinds of genomic information are being unveiled. Hence, now, it becomes feasible to study in molecular biology by analyzing the entire genomic information. On the other hand, the quantity of the genomic information stocked in database is increasing day after day. In order to process the whole information, we have to develop an effective method to deal with lots of data. It is indispensable not only to make an effective and rapid algorithm but also to use high-speed computer resource so as to analyze the biological information. For this purpose, as one of the most promised computing environments, the grid computing architecture has appeared recently. The European Data Grid (EDG) is one of the grid com-puting environments. In the first stage of designing hybridization probes and PCR primers, it is extremely important to find genuinely unique sequence on a target genome. We deployed a novel method to design PCR primers, which takes into account not only the specificity of the primer itself but also the uniqueness of the product length. In this paper, we improve our proposed method to find unique PCR products on distributed databases. We show also the sequences found by our method, which can not be uniquely observed by any probe sequence but by a pair of PCR primers on S. cerevisiae genome. 1

Orbitally Driven Spin Pairing in the 3D Non-Magnetic Mott Insulator BaVS3: Evidence from Single Crystal Studies

Static electrical and magnetic properties of single crystal BaVS_3 were measured over the structural (T_S=240K), metal-insulator (T_MI=69K), and suspected orbital ordering (T_X=30K) transitions. The resistivity is almost isotropic both in the metallic and insulating states. An anomaly in the magnetic anisotropy at T_X signals a phase transition to an ordered low-T state. The results are interpreted in terms of orbital ordering and spin pairing within the lowest crystal field quasi-doublet. The disordered insulator at T_X<T<T_MI is described as a classical liquid of non-magnetic pairs.Comment: 4 pages, 5 figures, revtex, epsf, and multicol style. Problem with figures fixed. To appear in Phys. Rev. B Rap. Com

Ab initio calculation of resonant X-ray scattering in Manganites

We study the origin of the resonant x-ray signal in manganites and generalize the resonant cross-section to the band structure framework. With {\it ab initio} LSDA and LSDA+U calculations we determine the resonant x-ray spectrum of LaMnO$_3$. The calculated spectrum and azimuthal angle dependence at the Mn $K$-edge reproduce the measured data without adjustable parameters. The intensity of this signal is directly related to the orthorhombicity of the lattice. We also predict a resonant x-ray signal at the La $L$-edge, caused by the tilting of the MnO$_6$ octahedra. This shows that the resonant x-ray signal in the hard x-ray regime can be understood in terms of the band structure of a material and is sensitive to the fine details of crystal structure.Comment: 4 pages, 4 figures, accepted for publication in Phys. Rev.

Magnon Heat Transport in (Sr,La)_14Cu_24O_41

We have measured the thermal heat conductivity kappa of the compounds Sr_14Cu_24O_41 and Ca_9La_5Cu_24O_41 containing doped and undoped spin ladders, respectively. We find a huge anisotropy of both, the size and the temperature dependence of kappa which we interpret in terms of a very large heat conductivity due to the magnetic excitations of the one-dimensional spin ladders. This magnon heat conductivity decreases with increasing hole doping of the ladders. The magnon heat transport is analyzed theoretically using a simple kinetic model. From this analysis we determine the spin gap and the temperature dependent mean free path of the magnons which ranges by several thousand angstroms at low temperature. The relevance of several scattering channels for the magnon transport is discussed.Comment: 6 pages, 5 figures, submitted to Phys. Rev.

Manganites at Quarter Filling: Role of Jahn-Teller Interactions

We have analyzed different correlation functions in a realistic spin-orbital model for half-doped manganites. Using a finite-temperature diagonalization technique the CE phase was found in the charge-ordered phase in the case of small antiferromagnetic interactions between $t_{2g}$ electrons. It is shown that a key ingredient responsible for stabilization of the CE-type spin and orbital-ordered state is the cooperative Jahn-Teller (JT) interaction between next-nearest Mn$^{+3}$ neighbors mediated by the breathing mode distortion of Mn$^{+4}$ octahedra and displacements of Mn$^{+4}$ ions. The topological phase factor in the Mn-Mn hopping leading to gap formation in one-dimensional models for the CE phase as well as the nearest neighbor JT coupling are not able to produce the zigzag chains typical for the CE phase in our model.Comment: 16 pages with 16 figures, contains a more detailed parameter estimate based on the structural data by Radaelli et al. (accepted for publication in Phys. Rev. B

Phase Diagram of the Heisenberg Spin Ladder with Ring Exchange

We investigate the phase diagram of a generalized spin-1/2 quantum antiferromagnet on a ladder with rung, leg, diagonal, and ring-exchange interactions. We consider the exactly soluble models associated with the problem, obtain the exact ground states which exist for certain parameter regimes, and apply a variety of perturbative techniques in the regime of strong ring-exchange coupling. By combining these approaches with considerations related to the discrete Z_4 symmetry of the model, we present the complete phase diagram.Comment: 17 pages, 10 figure

Primordial Black Hole Formation in a Double Inflation Model in Supergravity

It has been recently pointed out that the initial value problem in new inflation models is naturally solved by supergravity effects if there exists a pre-inflation before the new inflation. We study this double inflation model in details and find that density fluctuations on small cosmological scales are much larger than those on large scales due to peculiar property of the new inflation. We show that this results in production of primordial black holes which have $\sim 1 M_{\odot}$ masses in a certain parameter region of the double inflation model. We stress that these black holes may be identified with MACHOs observed in the halo of our galaxy.Comment: 19 pages (RevTeX file), KUNS-147

Quantum Phase Transition in the SU(4) Spin-Orbital Model on the Triangular Lattice

Motivated by the absence of cooperative Jahn-Teller effect in LiNiO2 and BaVS3, two layered oxides with triangular planes, we study the SU(4) symmetric spin-orbital model on the triangular lattice. Upon reducing the next-nearest neighbour coupling, we show that the system undergoes a quantum phase transition to a liquid phase. A variational approach to this liquid phase shows that simple types of long-range correlations are suppressed, suggesting that it is stable against lattice distortions.Comment: 5 pages, 5 figures, RevTex