242 research outputs found
Long-range nematic order and anomalous fluctuations in suspensions of swimming filamentous bacteria
We study the collective dynamics of elongated swimmers in a very thin fluid
layer by devising long, filamentous, non-tumbling bacteria. The strong
confinement induces weak nematic alignment upon collision, which, for large
enough density of cells, gives rise to global nematic order. This homogeneous
but fluctuating phase, observed on the largest experimentally-accessible scale
of millimeters, exhibits the properties predicted by standard models for
flocking such as the Vicsek-style model of polar particles with nematic
alignment: true long-range nematic order and non-trivial giant number
fluctuations.Comment: 6 pages, 4 figures. Supplemental Material: 6 pages, 3 figure
Drift instability in the motion of a fluid droplet with a chemically reactive surface driven by Marangoni flow
We theoretically derive the amplitude equations for a self-propelled droplet
driven by Marangoni flow. As advective flow driven by surface tension gradient
is enhanced, the stationary state becomes unstable and the droplet starts to
move. The velocity of the droplet is determined from a cubic nonlinear term in
the amplitude equations. The obtained critical point and the characteristic
velocity are well supported by numerical simulations.Comment: 9 pages, 4 figure
Noise-Induced Synchronization of a Large Population of Globally Coupled Nonidentical Oscillators
We study a large population of globally coupled phase oscillators subject to
common white Gaussian noise and find analytically that the critical coupling
strength between oscillators for synchronization transition decreases with an
increase in the intensity of common noise. Thus, common noise promotes the
onset of synchronization. Our prediction is confirmed by numerical simulations
of the phase oscillators as well as of limit-cycle oscillators
Experimental synchronization of circuit oscillations induced by common telegraph noise
Experimental realization and quantitative investigation of
common-noise-induced synchronization of limit-cycle oscillations subject to
random telegraph signals are performed using an electronic oscillator circuit.
Based on our previous formulation [K. Nagai et al., Phys. Rev. E 71, 036217
(2005)], dynamics of the circuit is described as random-phase mappings between
two limit cycles. Lyapunov exponents characterizing the degree of
synchronization are estimated from experimentally determined phase maps and
compared with linear damping rates of phase differences measured directly.
Noisy on-off intermittency of the phase difference as predicted by the theory
is also confirmed experimentally
Collective Motion of Self-Propelled Particles with Memory
International audienceWe show that memory, in the form of underdamped angular dynamics, is a crucial ingredient for the collective properties of self-propelled particles. Using Vicsek-style models with an Ornstein-Uhlenbeck process acting on angular velocity, we uncover a rich variety of collective phases not observed in usual overdamped systems, including vortex lattices and active foams. In a model with strictly nematic interactions the smectic arrangement of Vicsek waves giving rise to global polar order is observed. We also provide a calculation of the effective interaction between vortices in the case where a telegraphic noise process is at play, explaining thus the emergence and structure of the vortex lattices observed here and in motility assay experiments
Ultrafast single-molecule imaging reveals focal adhesion nano-architecture and molecular dynamics
細胞膜上の分子がバレエの群舞のように見えてきた: 1蛍光分子の感度で、究極速度で撮像できるカメラを開発. 京都大学プレスリリース. 2023-06-06.Using our newly developed ultrafast camera described in the companion paper, we reduced the data acquisition periods required for photoactivation/photoconversion localization microscopy (PALM, using mEos3.2) and direct stochastic reconstruction microscopy (dSTORM, using HMSiR) by a factor of ≈30 compared with standard methods, for much greater view-fields, with localization precisions of 29 and 19 nm, respectively, thus opening up previously inaccessible spatiotemporal scales to cell biology research. Simultaneous two-color PALM-dSTORM and PALM-ultrafast (10 kHz) single fluorescent-molecule imaging-tracking has been realized. They revealed the dynamic nanoorganization of the focal adhesion (FA), leading to the compartmentalized archipelago FA model, consisting of FA-protein islands with broad diversities in size (13–100 nm; mean island diameter ≈30 nm), protein copy numbers, compositions, and stoichiometries, which dot the partitioned fluid membrane (74-nm compartments in the FA vs. 109-nm compartments outside the FA). Integrins are recruited to these islands by hop diffusion. The FA-protein islands form loose ≈320 nm clusters and function as units for recruiting FA proteins
C. elegans collectively forms dynamical networks
Understanding physical rules underlying collective motions requires perturbation of controllable parameters in self-propelled particles. However, controlling parameters in animals is generally not easy, which makes collective behaviours of animals elusive. Here, we report an experimental system in which a conventional model animal, Caenorhabditis elegans, collectively forms dynamical networks of bundle-shaped aggregates. We investigate the dependence of our experimental system on various extrinsic parameters (material of substrate, ambient humidity and density of worms). Taking advantage of well-established C. elegans genetics, we also control intrinsic parameters (genetically determined motility) by mutations and by forced neural activation via optogenetics. Furthermore, we develop a minimal agent-based model that reproduces the dynamical network formation and its dependence on the parameters, suggesting that the key factors are alignment of worms after collision and smooth turning. Our findings imply that the concepts of active matter physics may help us to understand biological functions of animal groups
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