Theoretical Foundation of Cyclostationary EOF Analysis for Geophysical and Climatic Variables: Concepts and Examples

Natural variability is an essential component of observations of all geophysical and climate variables. In principal component analysis (PCA), also called empirical orthogonal function (EOF) analysis, a set of orthogonal eigenfunctions is found from a spatial covariance function. These empirical basis functions often lend useful insights into physical processes in the data and serve as a useful tool for developing statistical methods. The underlying assumption in PCA is the stationarity of the data analyzed; that is, the covariance function does not depend on the origin of time. The stationarity assumption is often not justifiable for geophysical and climate variables even after removing such cyclic components as the diurnal cycle or the annual cycle. As a result, physical and statistical inferences based on EOFs can be misleading. Some geophysical and climatic variables exhibit periodically time-dependent covariance statistics. Such a dataset is said to be periodically correlated or cyclostationary. A proper recognition of the time-dependent response characteristics is vital in accurately extracting physically meaningful modes and their space-time evolutions from data. This also has important implications in finding physically consistent evolutions and teleconnection patterns and in spectral analysis of variability-important goals in many climate and geophysical studies. In this study, the conceptual foundation of cyclostationary EOF (CSEOF) analysis is examined as an alternative to regular EOF analysis or other eigenanalysis techniques based on the stationarity assumption. Comparative examples and illustrations are given to elucidate the conceptual difference between the CSEOF technique and other techniques and the entailing ramification in physical and statistical inferences based on computational eigenfunctions. © The authors 2015

Mechanism of Seasonal Arctic Sea Ice Evolution and Arctic Amplification

Sea ice loss is proposed as a primary reason for the Arctic amplification, although the physical mechanism of the Arctic amplification and its connection with sea ice melting is still in debate. In the present study, monthly ERA-Interim reanalysis data are analyzed via cyclostationary empirical orthogonal function analysis to understand the seasonal mechanism of sea ice loss in the Arctic Ocean and the Arctic amplification. While sea ice loss is widespread over much of the perimeter of the Arctic Ocean in summer, sea ice remains thin in winter only in the Barents-Kara seas. Excessive turbulent heat flux through the sea surface exposed to air due to sea ice reduction warms the atmospheric column. Warmer air increases the downward longwave radiation and subsequently surface air temperature, which facilitates sea surface remains to be free of ice. This positive feedback mechanism is not clearly observed in the Laptev, East Siberian, Chukchi, and Beaufort seas, since sea ice refreezes in late fall (November) before excessive turbulent heat flux is available for warming the atmospheric column in winter. A detailed seasonal heat budget is presented in order to understand specific differences between the Barents-Kara seas and Laptev, East Siberian, Chukchi, and Beaufort seas

Fortnightly variability of horizontal salinity gradient affects exchange flow in the Sumjin River estuary

The horizontal salinity gradient has been reported to play a crucial role in fortnightly variability of estuarine exchange flow in short estuaries. However, spatiotemporal variations in the salinity gradient and exchange flow have not been examined over an entire short estuary, as only data observed only at specific points was available. We analyzed the variation in salinity gradient along the entire Sumjin River estuary and its effect on the exchange flow over fortnightly tidal cycles based on observations and numerical model experiments. The salinity gradient and exchange flow were in different phases between the lower and upper estuaries by 6–7 days. The maximum salinity gradient periodically reciprocated along the channel as a result of salt flux changes determined by vertical mixing. The stronger exchange flow (> 0.04 m s-1) changed location from mouth to head of estuary while the tidal range decreased, resulting from variability of the salinity gradient. The horizontal salinity gradient is large enough to overwhelm the vertical mixing effect on the exchange flow. The spatiotemporal changes of strong exchange flow correspond well with the horizontal Richardson number value (> 3). This study suggests that for the health of estuarine ecosystems, it is important to determine the spatiotemporal variation in exchange flow throughout the estuary

Optimizing Plant Disease Management in Agricultural Ecosystems Through Rational In-Crop Diversification

Biodiversity plays multifaceted roles in societal development and ecological sustainability. In agricultural ecosystems, using biodiversity to mitigate plant diseases has received renewed attention in recent years but our knowledge of the best ways of using biodiversity to control plant diseases is still incomplete. In term of in-crop diversification, it is not clear how genetic diversity per se in host populations interacts with identifiable resistance and other functional traits of component genotypes to mitigate disease epidemics and what is the best way of structuring mixture populations. In this study, we created a series of host populations by mixing different numbers of potato varieties showing different late blight resistance levels in different proportions. The amount of naturally occurring late blight disease in the mixture populations was recorded weekly during the potato growing seasons. The percentage of disease reduction (PDR) in the mixture populations was calculated by comparing their observed late blight levels relative to that expected when they were planted in pure stands. We found that PDR in the mixtures increased as the number of varieties and the difference in host resistance (DHR) between the component varieties increased. However, the level of host resistance in the potato varieties had little impact on PDR. In mixtures involving two varieties, the optimum proportion of component varieties for the best PDR depended on their DHR, with an increasing skewness to one of the component varieties as the DHR between the component varieties increased. These results indicate that mixing crop varieties can significantly reduce disease epidemics in the field. To achieve the best disease mitigation, growers should include as many varieties as possible in mixtures or, if only two component mixtures are possible, increase DHR among the component varieties

Decadal variability of the upper ocean heat content in the East/Japan Sea and its possible relationship to northwestern Pacific variability

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): C02017, doi:10.1029/2011JC007369.The upper ocean heat content variability in the East/Japan Sea was investigated using a 40 year temperature and salinity data set from 1968 to 2007. Decadal variability was identified as the dominant mode of variability in the upper ocean (0–300 m) aside from the seasonal cycle. The decadal variability is strong to the west of northern Honshu, west of the Tsugaru Strait, and west of southern Hokkaido. Temperature anomalies at 50–125 m exhibit a large contribution to the decadal variability, particularly in the eastern part of the East/Japan Sea. The vertical structure of regressed temperature anomalies and the spatial patterns of regressed 10°C isotherms in the East/Japan Sea suggest that the decadal variability is related to upper ocean circulation in the East/Japan Sea. The decadal variability also exhibits an increasing trend, which indicates that the regions showing large decadal variations experienced warming on decadal time scales. Further analysis shows that the decadal variability in the East/Japan Sea is not locally isolated but is related to variability in the northwestern Pacific.This work was supported by grants from the Ministry of Land, Transport, and Maritime Affairs, Korea (Ocean Climate Variability Program and EAST-I Project).2012-08-0

Cyclin Y inhibits plasticity-induced AMPA receptor exocytosis and LTP

Cyclin Y (CCNY) is a member of the cyclin protein family, known to regulate cell division in proliferating cells. Interestingly, CCNY is expressed in neurons that do not undergo cell division. Here, we report that CCNY negatively regulates long-term potentiation (LTP) of synaptic strength through inhibition of AMPA receptor trafficking. CCNY is enriched in postsynaptic fractions from rat forebrain and is localized adjacent to postsynaptic sites in dendritic spines in rat hippocampal neurons. Using live-cell imaging of a pH-sensitive AMPA receptor, we found that during LTP-inducing stimulation, CCNY inhibits AMPA receptor exocytosis in dendritic spines. Furthermore, CCNY abolishes LTP in hippocampal slices. Taken together, our findings demonstrate that CCNY inhibits plasticity-induced AMPA receptor delivery to synapses and thereby blocks LTP, identifying a novel function for CCNY in post-mitotic cells

Concert recording 2018-02-20a

[Track 1]. Fünf Orchesterlieder nach Ansichtenkartentexten von Peter Altenberg, op. 4. I. Seele, wie bist du schöner... [Track 2]. II. Sahst du nach dem Gewitterregen [Track 3]. III. Über die Grenzen des All [Track 4]. IV. Nichts ist gekommen [Track 5]. V. Hier ist Friede / Alban Berg -- [Track 6]. Flowers of heaven. Three songs on Korean poetry for soprano and cello. I. The home village [Track 7]. II. Wildflowers of the mountain [Track 8]. III. Return to heaven / Robert Mueller -- [Track 9]. Buru for voice and chamber ensemble / Suhki Kang -- [Track 10]. Little sketches for soprano and flute / Ivan Elezovic -- [Track 11]. Labyrinth of love for soprano and small chamber ensemble. II. Eros (Sappho fragment 47) [Track 12]. VI. Liz\u27s lament [Track 13]. VIII. Short talk on the sensation of aeroplane takeoff / Michael Daugherty

Colorectal Cancers from Distinct Ancestral Populations Show Variations in BRAF Mutation Frequency

It has been demonstrated for some cancers that the frequency of somatic oncogenic mutations may vary in ancestral populations. To determine whether key driver alterations might occur at different frequencies in colorectal cancer, we applied a high-throughput genotyping platform (OncoMap) to query 385 mutations across 33 known cancer genes in colorectal cancer DNA from 83 Asian, 149 Black and 195 White patients. We found that Asian patients had fewer canonical oncogenic mutations in the genes tested (60% vs Black 79% (P = 0.011) and White 77% (P = 0.015)), and that BRAF mutations occurred at a higher frequency in White patients (17% vs Asian 4% (P = 0.004) and Black 7% (P = 0.014)). These results suggest that the use of genomic approaches to elucidate the different ancestral determinants harbored by patient populations may help to more precisely and effectively treat colorectal cancer

The Prevalence and Drug Sensitivity of Tuberculosis among Patients Dying in Hospital in KwaZulu-Natal, South Africa: A Postmortem Study

A postmortem study by Ted Cohen and colleagues reveals a huge toll of tuberculosis among patients dying in hospitals in KwaZulu-Natal, South Africa

Is a cooperative approach to seaweed farming effectual? An analysis of the seaweed cluster project (SCP), Malaysia

Seaweed (Kappaphycus spp.) farming has been practised in Malaysia since the late 1970s following government policy incentives (training and farming inputs). However, numerous governance, economic, environmental, technological and sociocultural challenges have limited the industry from achieving its full potential. The Seaweed Cluster Project (SCP) was introduced in 2012 to address some of these challenges. We sought to evaluate the effectiveness of the SCP in delivering its central objectives of increasing seaweed production, optimising the farming area, improving seaweed quality and farming efficiency, raising farmers’ income, and reducing the environmental impact of seaweed farming. Community and industry perceptions of the SCP were obtained from seven communities using a mixed-methods approach based on face-to-face semi-structured interviews, focus group discussions, household surveys, observation and secondary data. Views on the SCP outcomes were generally negative, including low take-up rates by indigenous people, poor stakeholder participation in decision-making, limited acceptance of new technologies, economic vulnerability, a complex marketing system, and low social cohesion of seaweed farming communities. Positive perceptions included recognition that the SCP confers high social status upon a community, reduces operating costs, and facilitates the production of certified seaweed. The SCP’s problems are linked to poor multi-level governance, weak market mechanisms and unintegrated community development. The study concludes with five recommendations to improve the SCP: promote the participation of indigenous people; legalise existing migrant farmers; strengthen local seaweed cooperative organisations; provide entrepreneurship skills to farmers; and fully integrate stakeholders into decision-making