EPR Test with Photons and Kaons: Analogies

We present a unified formalism describing EPR test using spin 1/2 particles, photons and kaons. This facilitates the comparison between existing experiments using photons and kaons. It underlines the similarities between birefringence and polarization dependent losses that affects experiments using optical fibers and mixing and decay that are intrinsic to the kaons. We also discuss the limitation these two characteristics impose on the testing of Bell's inequality.Comment: 12 pages, 5 figure

Multiplicative random walk Metropolis-Hastings on the real line

In this article we propose multiplication based random walk Metropolis Hastings (MH) algorithm on the real line. We call it the random dive MH (RDMH) algorithm. This algorithm, even if simple to apply, was not studied earlier in Markov chain Monte Carlo literature. The associated kernel is shown to have standard properties like irreducibility, aperiodicity and Harris recurrence under some mild assumptions. These ensure basic convergence (ergodicity) of the kernel. Further the kernel is shown to be geometric ergodic for a large class of target densities on $\mathbb{R}$. This class even contains realistic target densities for which random walk or Langevin MH are not geometrically ergodic. Three simulation studies are given to demonstrate the mixing property and superiority of RDMH to standard MH algorithms on real line. A share-price return data is also analyzed and the results are compared with those available in the literature

Study of unstable particle through the spectral function in O(4) ϕ4\phi^4 theory

We test application of the maximum entropy method to decompose the states contributing to the unstable $\sigma$ correlation function through the spectral function in the four dimensional O(4) $\phi^4$ theory. Reliable results are obtained for the $\sigma$ mass and two-particle $\pi\pi$ state energy using only the $\sigma$ correlation function. We also find that the property of the $\sigma$ particle is different between the unstable ($m_{\sigma}/m_{\pi}>2$) and stable ($m_{\sigma}/m_{\pi}<2$) cases.Comment: Lattice2002(spectrum), 3 page

Noisy Monte Carlo: Convergence of Markov chains with approximate transition kernels

Monte Carlo algorithms often aim to draw from a distribution $\pi$ by simulating a Markov chain with transition kernel $P$ such that $\pi$ is invariant under $P$. However, there are many situations for which it is impractical or impossible to draw from the transition kernel $P$. For instance, this is the case with massive datasets, where is it prohibitively expensive to calculate the likelihood and is also the case for intractable likelihood models arising from, for example, Gibbs random fields, such as those found in spatial statistics and network analysis. A natural approach in these cases is to replace $P$ by an approximation $\hat{P}$. Using theory from the stability of Markov chains we explore a variety of situations where it is possible to quantify how 'close' the chain given by the transition kernel $\hat{P}$ is to the chain given by $P$. We apply these results to several examples from spatial statistics and network analysis.Comment: This version: results extended to non-uniformly ergodic Markov chain

CRANKITE: a fast polypeptide backbone conformation sampler

Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sampler of backbone conformations in continuous three-dimensional space in atomic details. Methods: In contrast to other programs relying on local Metropolis moves in the space of dihedral angles, our sampler utilizes local crankshaft rotations of rigid peptide bonds in Cartesian space. Results: The sampler allows fast simulation and analysis of secondary structure formation and conformational changes for proteins of average length

Bell inequality violation with two remote atomic qubits

We observe violation of a Bell inequality between the quantum states of two remote Yb ions separated by a distance of about one meter with the detection loophole closed. The heralded entanglement of two ions is established via interference and joint detection of two emitted photons, whose polarization is entangled with each ion. The entanglement of remote qubits is also characterized by full quantum state tomography.Comment: 4 pages, 4 figure

Approximation of Feynman path integrals with non-smooth potentials

We study the convergence in $L^2$ of the time slicing approximation of Feynman path integrals under low regularity assumptions on the potential. Inspired by the custom in Physics and Chemistry, the approximate propagators considered here arise from a series expansion of the action. The results are ultimately based on function spaces, tools and strategies which are typical of Harmonic and Time-frequency analysis.Comment: 18 page

Delineation of the Native Basin in Continuum Models of Proteins

We propose two approaches for determining the native basins in off-lattice models of proteins. The first of them is based on exploring the saddle points on selected trajectories emerging from the native state. In the second approach, the basin size can be determined by monitoring random distortions in the shape of the protein around the native state. Both techniques yield the similar results. As a byproduct, a simple method to determine the folding temperature is obtained.Comment: REVTeX, 6 pages, 5 EPS figure