Pigment Melanin: Pattern for Iris Recognition

Recognition of iris based on Visible Light (VL) imaging is a difficult problem because of the light reflection from the cornea. Nonetheless, pigment melanin provides a rich feature source in VL, unavailable in Near-Infrared (NIR) imaging. This is due to biological spectroscopy of eumelanin, a chemical not stimulated in NIR. In this case, a plausible solution to observe such patterns may be provided by an adaptive procedure using a variational technique on the image histogram. To describe the patterns, a shape analysis method is used to derive feature-code for each subject. An important question is how much the melanin patterns, extracted from VL, are independent of iris texture in NIR. With this question in mind, the present investigation proposes fusion of features extracted from NIR and VL to boost the recognition performance. We have collected our own database (UTIRIS) consisting of both NIR and VL images of 158 eyes of 79 individuals. This investigation demonstrates that the proposed algorithm is highly sensitive to the patterns of cromophores and improves the iris recognition rate.Comment: To be Published on Special Issue on Biometrics, IEEE Transaction on Instruments and Measurements, Volume 59, Issue number 4, April 201

Learning Representations from Persian Handwriting for Offline Signature Verification, a Deep Transfer Learning Approach

Offline Signature Verification (OSV) is a challenging pattern recognition task, especially when it is expected to generalize well on the skilled forgeries that are not available during the training. Its challenges also include small training sample and large intra-class variations. Considering the limitations, we suggest a novel transfer learning approach from Persian handwriting domain to multi-language OSV domain. We train two Residual CNNs on the source domain separately based on two different tasks of word classification and writer identification. Since identifying a person signature resembles identifying ones handwriting, it seems perfectly convenient to use handwriting for the feature learning phase. The learned representation on the more varied and plentiful handwriting dataset can compensate for the lack of training data in the original task, i.e. OSV, without sacrificing the generalizability. Our proposed OSV system includes two steps: learning representation and verification of the input signature. For the first step, the signature images are fed into the trained Residual CNNs. The output representations are then used to train SVMs for the verification. We test our OSV system on three different signature datasets, including MCYT (a Spanish signature dataset), UTSig (a Persian one) and GPDS-Synthetic (an artificial dataset). On UT-SIG, we achieved 9.80% Equal Error Rate (EER) which showed substantial improvement over the best EER in the literature, 17.45%. Our proposed method surpassed state-of-the-arts by 6% on GPDS-Synthetic, achieving 6.81%. On MCYT, EER of 3.98% was obtained which is comparable to the best previously reported results

An Efficient Bayesian Inference Framework for Coalescent-Based Nonparametric Phylodynamics

Phylodynamics focuses on the problem of reconstructing past population size dynamics from current genetic samples taken from the population of interest. This technique has been extensively used in many areas of biology, but is particularly useful for studying the spread of quickly evolving infectious diseases agents, e.g.,\ influenza virus. Phylodynamics inference uses a coalescent model that defines a probability density for the genealogy of randomly sampled individuals from the population. When we assume that such a genealogy is known, the coalescent model, equipped with a Gaussian process prior on population size trajectory, allows for nonparametric Bayesian estimation of population size dynamics. While this approach is quite powerful, large data sets collected during infectious disease surveillance challenge the state-of-the-art of Bayesian phylodynamics and demand computationally more efficient inference framework. To satisfy this demand, we provide a computationally efficient Bayesian inference framework based on Hamiltonian Monte Carlo for coalescent process models. Moreover, we show that by splitting the Hamiltonian function we can further improve the efficiency of this approach. Using several simulated and real datasets, we show that our method provides accurate estimates of population size dynamics and is substantially faster than alternative methods based on elliptical slice sampler and Metropolis-adjusted Langevin algorithm

The search for black hole binaries using a genetic algorithm

In this work we use genetic algorithm to search for the gravitational wave signal from the inspiralling massive Black Hole binaries in the simulated LISA data. We consider a single signal in the Gaussian instrumental noise. This is a first step in preparation for analysis of the third round of the mock LISA data challenge. We have extended a genetic algorithm utilizing the properties of the signal and the detector response function. The performance of this method is comparable, if not better, to already existing algorithms.Comment: 11 pages, 4 figures, proceeding for GWDAW13 (Puerto Rico

A Review on Effects of Aloe Vera as a Feed Additive in Broiler Chicken Diets

Prohibition of application of antibiotic growth promoters in broiler chicken diets has resulted in increased use of herbs as natural additives in broiler feeds over the recent years. Researchers particularly look for herbs that can affect such parameters as growth performance, immune response, or treatment of certain diseases. Aloe vera is a well-known herb characterized by properties such as anti-bacterial, anti-viral, anti-fungal, anti-tumor, anti-inflammatory, immunomodulatory, wound-healing, anti-oxidant, and anti-diabetic effects. During the past years, attention has shifted toward Aloe vera as a natural additive to broiler diets, and studies have shown that Aloe vera can improve immune response and growth performance in broilers. In addition, Aloe vera is an excellent alternative for antibiotic growth promoters and anticoccidial drugs. Since Aloe vera can be used for broilers in the form of gel, powder, ethanolic extract, aqueous extract, and a polysaccharide contained in Aloe vera gel (i.e. acemannan), more studies are required to determine the best form and to compare Aloe vera with other medicinal herbs. This paper reviews effects of Aloe vera on intestinal microflora, growth performance, immune response, and coccidiosis in broiler chickens

Dilaton Cosmology, Noncommutativity and Generalized Uncertainty Principle

The effects of noncommutativity and of the existence of a minimal length on the phase space of a dilatonic cosmological model are investigated. The existence of a minimum length, results in the Generalized Uncertainty Principle (GUP), which is a deformed Heisenberg algebra between the minisuperspace variables and their momenta operators. We extend these deformed commutating relations to the corresponding deformed Poisson algebra. For an exponential dilaton potential, the exact classical and quantum solutions in the commutative and noncommutative cases, and some approximate analytical solutions in the case of GUP, are presented and compared.Comment: 16 pages, 3 figures, typos correcte

Building a stochastic template bank for detecting massive black hole binaries

Coalescence of two massive black holes is the strongest and most promising source for LISA. In fact, gravitational signal from the end of inspiral and merger will be detectable throughout the Universe. In this article we describe the first step in the two-step hierarchical search for gravitational wave signal from the inspiraling massive BH binaries. It is based on the routinely used in the ground base gravitational wave astronomy method of filtering the data through the bank of templates. However we use a novel Monte-Carlo based (stochastic) method to lay a grid in the parameter space, and we use the likelihood maximized analytically over some parameters, known as F-statistic, as a detection statistic. We build a coarse template bank to detect gravitational wave signals and to make preliminary parameter estimation. The best candidates will be followed up using Metropolis-Hasting stochastic search to refine the parameter estimation. We demonstrate the performance of the method by applying it to the Mock LISA data challenge 1B (training data set).Comment: revtex4, 8 figure

Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae

<p>Abstract</p> <p>Background</p> <p>It has been understood that biological networks have modular organizations which are the sources of their observed complexity. Analysis of networks and motifs has shown that two types of hubs, party hubs and date hubs, are responsible for this complexity. Party hubs are local coordinators because of their high co-expressions with their partners, whereas date hubs display low co-expressions and are assumed as global connectors. However there is no mutual agreement on these concepts in related literature with different studies reporting their results on different data sets. We investigated whether there is a relation between the biological features of <it>Saccharomyces Cerevisiae</it>'s proteins and their roles as non-hubs, intermediately connected, party hubs, and date hubs. We propose a classifier that separates these four classes.</p> <p>Results</p> <p>We extracted different biological characteristics including amino acid sequences, domain contents, repeated domains, functional categories, biological processes, cellular compartments, disordered regions, and position specific scoring matrix from various sources. Several classifiers are examined and the best feature-sets based on average correct classification rate and correlation coefficients of the results are selected. We show that fusion of five feature-sets including domains, Position Specific Scoring Matrix-400, cellular compartments level one, and composition pairs with two and one gaps provide the best discrimination with an average correct classification rate of 77%.</p> <p>Conclusions</p> <p>We study a variety of known biological feature-sets of the proteins and show that there is a relation between domains, Position Specific Scoring Matrix-400, cellular compartments level one, composition pairs with two and one gaps of <it>Saccharomyces Cerevisiae'</it>s proteins, and their roles in the protein interaction network as non-hubs, intermediately connected, party hubs and date hubs. This study also confirms the possibility of predicting non-hubs, party hubs and date hubs based on their biological features with acceptable accuracy. If such a hypothesis is correct for other species as well, similar methods can be applied to predict the roles of proteins in those species.</p