Blood mobilization from the liver of the anaesthetized dog

The abdominal circulation contains a high proportion of the total blood volume and this can change either passively in response to changes in vascular distending pressure or actively (termed a capacitance response) to changes in sympathetic nervous activity. The liver is the largest abdominal organ and this study was designed to evaluate its potential contribution to overall vascular capacitance and compliance. In chloralose anaesthetized dogs, the liver was vascularly isolated, perfused through the portal vein and hepatic artery at either constant pressures or constant flows and drained from the hepatic veins at constant pressure. Changes in vascular resistance were assessed from changes in inflow pressures or flows and hepatic blood volume was determined by differences between net inflow and outflow. During constant flow perfusion the change in hepatic volume (capacitance change) in response to supramaximal stimulation of sympathetic nerves at 16 Hz was (mean ± S.E.M.) -2·40 ± 0·61 ml (kg body weight)-1. This response was not significantly different during constant pressure perfusion. The changes in portal venous and hepatic arterial pressures during stimulation at constant flow perfusion were +0·67 ± 0·13 and +4·92 ± 0·67 kPa, respectively. The compliance of the liver, assessed as the change in volume to a change in hepatic venous pressure, was +5·44 ± 0·18 ml kg-1 kPa-1. These results indicate that the liver has a major capacitance role, comparable to that of the canine spleen and, in addition, is highly compliant. No evidence was found to suggest that a sphincter on the hepatic outflow exists. Assuming similar responses occur in humans, who do not possess a large contractile spleen, the liver would be the most important controllable blood reservoir in the body

Reflex responses from the main pulmonary artery and bifurcation in anaesthetised dogs

This study was undertaken to determine the reflex cardiovascular and respiratory responses to discrete stimulation of pulmonary arterial baroreceptors using a preparation in which secondary modulation of responses from other reflexes was prevented. Dogs were anaesthetised with [alpha]-chloralose, artificially ventilated, the chests widely opened and a cardiopulmonary bypass established. The main pulmonary arterial trunk, bifurcation and extrapulmonary arteries as far as the first lobar arteries on each side were vascularly isolated and perfused through the left pulmonary artery and drained via the right artery through a Starling resistance which controlled pulmonary arterial pressure. Pressures distending systemic baroreceptors and reflexogenic regions in the heart were controlled. Reflex vascular responses were assessed from changes in perfusion pressures to a vascularly isolated hind limb and to the remainder of the subdiaphragmatic systemic circulation, both of which were perfused at constant flows. Respiratory responses were assessed from recordings of efferent phrenic nerve activity. Increases in pulmonary arterial pressure consistently evoked increases in both perfusion pressures and in phrenic nerve activity. Both vascular and respiratory responses were obtained when pulmonary arterial pressure was increased to above about 30 mmHg. Responses increased at higher levels of pulmonary arterial pressures. In 13 dogs increases in pulmonary arterial pressure to 45 mmHg increased systemic perfusion pressure by 24 ± 7 mmHg (mean ± S.E.M.) from 162 ± 11 mmHg. Setting carotid sinus pressure at different levels did not influence the vascular response to changes in pulmonary arterial pressure. The presence of a negative intrathoracic pressure of -20 mmHg resulted in larger vascular responses being obtained at lower levels of pulmonary arterial pressure. This indicates that the reflex may be more effective in the intact closed-chest animal. These results demonstrate that stimulation of pulmonary arterial baroreceptors evokes a pressor reflex and augments respiratory drive. This reflex is likely to be elicited in circumstances where pulmonary arterial pressure increases and the negative excursions of intrathoracic pressure become greater. They are likely, therefore, to be involved in the cardio-respiratory response to exercise as well as in pathological states such as pulmonary hypertension or restrictive or obstructive lung disease

Absence of reflex vascular responses from the intrapulmonary circulation in anaesthetised dogs

The aim of this investigation was to determine whether reflex cardiovascular responses were obtained to localised distension of the intrapulmonary arterial and venous circulations in a preparation in which the stimuli to other major reflexogenic areas were controlled and the lung was shown to possess reflex activity. Dogs were anaesthetised with [alpha]-chloralose, artificially ventilated, the chests widely opened and a cardiopulmonary bypass established. The intrapulmonary region of the left lung was isolated and perfused through the left pulmonary artery and drained through cannulae in the left pulmonary veins via a Starling resistance. Intrapulmonary arterial and venous pressures were controlled by the rate of inflow of blood and the pressure applied to the Starling resistance. Pressures to the carotid, aortic and coronary baroreceptors and heart chambers were controlled. Responses of vascular resistance were assessed from changes in perfusion pressures to a vascularly isolated hind limb and to the remainder of the subdiaphragmatic circulation (flows constant). The reactivity of the preparation was demonstrated by observing decreases in vascular resistance to large step changes in carotid sinus pressure (systemic vascular resistance decreased by -40 ± 5 %), chemical stimulation of lung receptors by injection into the pulmonary circulation of veratridine or capsaicin (resistance decreased by -32 ± 4 %) and, in the four dogs tested, increasing pulmonary stroke volume to 450 ml (resistance decreased by -24 ± 6 %). However, despite this evidence that the lung was innervated, increases in intrapulmonary arterial pressure from 14 ± 1 to 43 ± 3 mmHg or in intrapulmonary venous pressure from 5 ± 2 to 34 ± 2 mmHg or both did not result in any consistent changes in systemic or limb vascular resistances. In two animals tested, however, there were marked decreases in efferent phrenic nerve activity. These results indicate that increases in pressure confined to the intrapulmonary arterial and venous circulations do not cause consistent reflex vascular responses, even though the preparation was shown to be reflexly active and the lung was shown to be innervated

Cerulean: A hybrid assembly using high throughput short and long reads

Genome assembly using high throughput data with short reads, arguably, remains an unresolvable task in repetitive genomes, since when the length of a repeat exceeds the read length, it becomes difficult to unambiguously connect the flanking regions. The emergence of third generation sequencing (Pacific Biosciences) with long reads enables the opportunity to resolve complicated repeats that could not be resolved by the short read data. However, these long reads have high error rate and it is an uphill task to assemble the genome without using additional high quality short reads. Recently, Koren et al. 2012 proposed an approach to use high quality short reads data to correct these long reads and, thus, make the assembly from long reads possible. However, due to the large size of both dataset (short and long reads), error-correction of these long reads requires excessively high computational resources, even on small bacterial genomes. In this work, instead of error correction of long reads, we first assemble the short reads and later map these long reads on the assembly graph to resolve repeats. Contribution: We present a hybrid assembly approach that is both computationally effective and produces high quality assemblies. Our algorithm first operates with a simplified version of the assembly graph consisting only of long contigs and gradually improves the assembly by adding smaller contigs in each iteration. In contrast to the state-of-the-art long reads error correction technique, which requires high computational resources and long running time on a supercomputer even for bacterial genome datasets, our software can produce comparable assembly using only a standard desktop in a short running time.Comment: Peer-reviewed and presented as part of the 13th Workshop on Algorithms in Bioinformatics (WABI2013

Superstars and Giant Gravitons in M-theory

Following hep-th/0109127, we show that a certain class of BPS naked singularities (superstars) found in compactifications of M-theory can be interpreted as being composed of giant gravitons. More specifically, we study superstars which are asymptotically AdS_7 x S^4 and AdS_4 x S^7 and show that these field configurations can be interpreted as being sourced by continuous distributions of spherical M2- and M5-branes, respectively, which carry internal momenta and have expanded on the spherical component of the space-time.Comment: 13 page

Efficient room temperature cw Yb:glass laser pumped by a 946nm Nd:YAG laser

By pumping with a cw diode-pumped Nd:YAG laser operating at 946nm laser operation of a new Yb-doped phosphate glass with 440mW cw output power and a slope efficiency of 48% with respect to the absorbed pump power was achieved at room temperature

Bimodal granulocyte transit time through the human lung demonstrated by deconvolution analysis

AbstractThe lungs are an important site of granulocyte pooling. The aim of the study is to quantify pulmonary vascular granulocyte transit time using deconvolution analysis, as has previously been performed to measure pulmonary red cell transit time. Granulocyte and red cell studies were performed in separate groups of patients. Both cell types were labelled with Tc-99m, which for granulocyte labelling was complexed with hexamethylpropyleneamine oxime (HMPAO). The red cell impulse response function (IRF) was monoexponential with a median transit time of 4·3 s. The granulocyte IRF was biexponential in 19 of 22 subjects, 18 of whom had systemic inflammation (inflammatory bowel disease, systemic vasculitis or graft-vs-host disease) and four were controls without inflammatory disease. The median transit time of the fast component ranged from 20 to 25 s and of the slow component 120–138 s in the four patient groups. The fraction of cells undergoing slow transit correlated significantly with (a) mean granulocyte transit time and (b) the fraction showing shape change in vitro. We conclude that granulocyte transit time through the pulmonary circulation is bimodal and that shape-changed (activated) cells transit more slowly that non-activated cells. The size of the fraction undergoing slow transit is closely related to mean granulocyte transit time and is an important determinant of the size of the pulmonary vascular granulocyte pool

Towards a holographic dual of large-N_c QCD

We study N_f D6-brane probes in the supergravity background dual to N_c D4-branes compactified on a circle with supersymmetry-breaking boundary conditions. In the limit in which the resulting Kaluza--Klein modes decouple, the gauge theory reduces to non-supersymmetric, four-dimensional QCD with N_c colours and N_f << N_c flavours. As expected, this decoupling is not fully realised within the supergravity/Born--Infeld approximation. For N_f = 1 and massless quarks, m_q = 0, we exhibit spontaneous chiral symmetry breaking by a quark condensate, \neq 0, and find the associated massless `pion' in the spectrum. The latter becomes massive for m_q > 0, obeying the Gell-Mann--Oakes--Renner relation: M_pi^2= - m_q / \f_pi^2. In the case N_f > 1 we provide a holographic version of the Vafa--Witten theorem, which states that the U(N_f) flavour symmetry cannot be spontaneously broken. Further we find N_f^2 - 1 unexpectedly light pseudo-scalar mesons in the spectrum. We argue that these are not (pseudo) Goldstone bosons and speculate on the string mechanism responsible for their lightness. We then study the theory at finite temperature and exhibit a phase transition associated with a discontinuity in the chiral condensate. D6/anti-D6 pairs are also briefly discussed.Comment: 43 pages, LaTeX; v3: Scalar vs. pseudo-scalar nature of mesons clarified, references added. v4: Small change in Acknowledgment

g=1 for Dirichlet 0-branes

Dirichlet 0-branes, considered as extreme Type IIA black holes with spin carried by fermionic hair, are shown to have the anomalous gyromagnetic ratio g=1, consistent with their interpretation as Kaluza-Klein modes.Comment: 13 pages, Late

Broccoli cultivar performance under organic and conventional management systems and implications for crop improvement

To determine if present commercial broccoli cultivars meet the diverse needs of organic management systems, such as adaptation to low N input, mechanical weed management, and no chemical pesticide use, and to propose the selection environments for crop improvement for organic production, we compared horticultural trait performance of 23 broccoli cultivars (G) under two management (M) systems (organic and conventional) in two regions of the United States (Oregon and Maine), including spring and fall trials. In our trials, location and season had the largest effect on broccoli head weight, with Oregon outperforming Maine, and fall trials outperforming spring plantings. M main effects and G × M interactions were often small, but G × M × E (location and season) were large. Cultivars with both greater head weight and stability under conventional conditions generally had high head weight and stability under organic growing conditions, although there were exceptions in cultivar rank between management systems. Larger genotypic variances and somewhat increased error variances observed in organic compared with conventional management systems led to repeatability for head weight and other horticultural traits that were similar or even higher in organic compared with conventional conditions. The ratio of correlated response (predicting performance under organic conditions when evaluated in conventional conditions) to direct response (predicted performance in organic when evaluated under organic conditions) for all traits was close to but less than 1.0 with the exception of bead uniformity. This would imply that in most cases, direct selection in an organic environment could result in a more rapid genetic gain than indirect selection in a conventional environment