Preliminary surveys of the fish and fisheries of the Nzoia, Nyando and Sondu Miriu rivers, Kenya

Three Lake Victoria rivers were sampled to assess fish abundance and distribution in preparation for assessment of catches from the river systems. Preliminary fish abundance data indicate that fishing potential upstream is negligible but that important commercial species are present in the downstream floodplain areas. Three catfish species were recorded in the Nzoia river system that have not been found previously in the Kenyan sector of the Lake Victoria system, together with possibly two undescribed Barbus species

Effects of Bacillus thuringiensis CRY1A(c) d-endotoxin on growth, nodulation and productivity of beans [Phaseolus vulgaris (L.) and siratro (Macroptilium atropurpureum DC.)]

The recent introduction of Bt maize and Bt cotton transgenic crops into Africa has raised concerns on their potential short and long-term ecological effects on the environment. The effects of Bacillus thuringiensis (Bt) Cry1A(c) d-endotoxin on the growth, nodulation and productivity of two leguminous plants grown in clay soil were evaluated. Bt Cry1A(c) d-endotoxin from a local B. thuringiensis isolate (ICIPE L1-2) active against Chilo partellus (Swinhoe) was used. Beans (Phaseolus vulgaris L.) and Siratro (Macroptilium atropurpureum DC.) seedlings were grown in pots treated with Bt Cry1A(c) dendotoxin solution (100 ìg/ml). Control experiments were treated with water. The plants were maintained in the greenhouse until nodulation (8 weeks) and maturity (14 weeks) stages when sampling was done for measurements of morphological, productivity and nodulation traits. Nodulation was observed in both plants species. Nitrogen content in treatments for both bean and siratro plants, withand without Bt-toxin not were significantly different. Leaf area, plant dry weight, number of pods per plants and number of seeds per pod observed in treatments with and without Bt-toxin for both bean and siratro plants were also not significantly different. This shows that Bt Cry1A(c) delta-endotoxin does not interfere with the host plant growth, nodulation and productivity in clay soil. Findings will provide researchers with data to design more robust experiments and will inform the decisions of diversestakeholders regarding the safety of transgenic crops

Experiences in effective communication on transgenic technology in Africa – the case of the insect resistant maize for Africa (IRMA) project

The Insect Resistant Maize for Africa (IRMA) Project, aimed to improve food security through developing and deploying locally adapted stem borer resistant maize varieties using both conventional and biotechnology mediated methods, especially Bt technology. This technology uses a gene from the soil bacterium Bacillus thuringiensis (Bt) to create transgenic maize varieties. Transgenic technologies have been a controversial and emotive topic in recent years, and the IRMA project was launched against this backdrop. To ensure widespread acceptance of the IRMA project and its Bt technology, the project carefully planned and implemented its communication and public awareness strategy. Following its public launch in March 2000, the project promoted an open communication environment and continuously engaged with stakeholders to update them on progress. The project achieved this through targeted and diverse communications products such as media articles and broadcast news pieces, newsletters, websites, videos and reports. To complement these, the project conducted annual stakeholders’ meetings, and specialized training for frontline project staff and collaborators, especially extension agents. This paper reviews the IRMA Project’s public awareness and communication strategy and analyzes its effectiveness.Key words: Transgenic technology, Bacillus thuringiensis (Bt) maize technology, communication, public awareness, insect resistant maize for Africa (IRMA) project

Developing Bt maize for resource-poor farmers – Recent advances in the IRMA project

This paper presents an overview of the advances in the IRMA project, which develops insect resistant maize varieties for resource-poor farmers, using both conventional breeding and genetic engineering. The project started in 1999 and is active in product development, impact assessment, andcommunication, all within the Kenya regulatory framework. So far, four application for introduction of tissue or commencement of field research were made to and approved by the National Biosafety Committee (NBC), and Bt maize leaves or seeds genes imported for testing against different stem borer species in bioassays on cut leaves in a biosafety laboratory, in potted plants in a Biosafety Greenhouse, and as whole plants in confined field trials in the Open Quarantine Station (OQS) at KARI Kiboko. All these biosafety facilities were specially built by the project for these evaluations. So far, good control has been realized against four of the five major stem borer species: Chilo partellus, Chilo orichalcociliellus, Eldana saccharina and Sesamia calamistis. Economic  impact assessment demonstrated that stem borers are major constraints and cause substantial losses. Resistant maizevarieties are likely to be adopted and to provide major returns to the investment if resistance against the economically most important species, Busseola fusca, can be found. Otherwise, returns would still be positive but small. Environmental impact research indicate that build-up of resistance against the Bt genes has not developed after that sufficient natural refugia exist in most areas, but suitable strategies acceptable to farmers need to be developed for some. Surveys, stakeholders meetings and other communications indicate that farmers, consumers and other stakeholders are cautiously optimistic about technology. Frequent interaction with the stakeholders and regulatory agencies assures a participative decision-making process and compliance with the strictest scientific and regulatorystandards

Combining ability of maize (Zea mays L.) inbred lines resistant to stem borers

Ten inbred parents with varying resistance levels to Chilo partellus and Busseola fusca were crossed in a half diallel mating scheme to generate 45 F1 hybrids. The hybrids and five commercial checks were evaluated across four locations in Kenya under artificial and natural infestation in 2009. Genotype (G) by environment (E) interaction (G x E) was non-significant for stem borer leaf damage, number of exit holes and tunnel length, suggesting that screening for stem borer resistance at one location would be adequate. On the other hand, G x E and general combining ability (GCA) x environment interactions were highly significant for gray leaf spot and turcicum leaf blight, indicating an inbred line resistance to a disease in one location may have a different reaction to the same disease in another location. The results of combining ability analysis showed that GCA effects were significant for stem borer resistance traits (leaf damage scores, number of exit holes, and tunnel length) while the opposite was true for specific combining ability (SCA) effects. Parents 5, 2, 6, 9 and 3, were good sources of genes for higher grain yield while parents 1 and 4 were good sources of resistance genes for stem borers. Hybrid 5 x 9 was the best performing hybrid in grain yield (6.53 t/ha) across the locations, while hybrid 1 x 4 was the least performing in grain yield (3.08 t/ha). The source of stem borer resistance identified in the study may be useful for improving levels of stem borer resistance in maize breeding  programs in eastern and southern Africa.Key words: Combining ability, maize, inbred lines, stem borers

Molecular characterization of rotavirus group A strains circulating prior to vaccine introduction in rural coastal Kenya, 2002-2013

Background Kenya introduced the monovalent Rotarix® rotavirus group A (RVA) vaccine nationally in mid-2014. Long-term surveillance data is important prior to wide-scale vaccine use to assess the impact on disease and to investigate the occurrence of heterotypic strains arising through immune selection. This report presents baseline data on RVA genotype circulation patterns and intra-genotype genetic diversity over a 7-year period in the pre-vaccine era in Kilifi, Kenya, from 2002 to 2004 and from 2010 to 2013. Methods A total of 745 RVA strains identified in children admitted with acute gastroenteritis to a referral hospital in Coastal Kenya, were sequenced using the di-deoxy sequencing method in the VP4 and VP7 genomic segments (encoding P and G proteins, respectively). Sequencing successfully generated 569 (76%) and 572 (77%) consensus sequences for the VP4 and VP7 genes respectively. G and P genotypes were determined by use of BLAST and the online RotaC v2 RVA classification tool. Results The most common GP combination was G1P[8] (51%), similar to the Rotarix® strain, followed by G9P[8] (15%) , G8P[4] (14%) and G2P[4] (5%). Unusual GP combinations—G1P[4], G2P[8], G3P[4,6], G8P[8,14], and G12P[4,6,8]—were observed at frequencies of <5%. Phylogenetic analysis showed that the infections were caused by both locally persistent strains as evidenced by divergence of local strains occurring over multiple seasons from the global ones, and newly introduced strains, which were closely related to global strains. The circulating RVA diversity showed temporal fluctuations both season by season and over the longer-term. None of the unusual strains increased in frequency over the observation period. Conclusions The circulating RVA diversity showed temporal fluctuations with several unusual strains recorded, which rarely caused major outbreaks. These data will be useful in interpreting genotype patterns observed in the region during the vaccine er

Acute Ascaris infection impairs the effector functions of natural killer cells in single and Salmonella co-infected pigs

Natural killer (NK) cells play a key role in defense against Salmonella infections during the early phase of infection. Our previous work showed that the excretory/secretory products of Ascaris suum repressed NK activity in vitro. Here, we asked if NK cell functionality was influenced in domestic pigs during coinfection with Ascaris and Salmonella enterica serotype Typhimurium. Ascaris coinfection completely abolished the IL-12 and IL-18 driven elevation of IFN-γ production seen in CD16 + CD8α + perforin + NK cells of Salmonella single-infected pigs. Furthermore, Ascaris coinfection prohibited the Salmonella-driven rise in NK perforin levels and CD107a surface expression. In line with impaired effector functions, NK cells from Ascaris-single and coinfected pigs displayed elevated expression of the inhibitory KLRA1 and NKG2A receptors genes, contrasting with the higher expression of the activating NKp46 and NKp30 receptors in NK cells during Salmonella single infection. These differences were accompanied by the highly significant upregulation of T-bet protein expression in NK cells from Ascaris-single and Ascaris/Salmonella coinfected pigs. Together, our data strongly indicate a profound repression of NK functionality by an Ascaris infection which may hinder infected individuals from adequately responding to a concurrent bacterial infection

Author Correction: Bacteriological diagnosis of childhood TB: a prospective observational study.

A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper

Population-Level Benefits from Providing Effective HIV Prevention Means to Pregnant Women in High Prevalence Settings

Background:HIV prevalence among pregnant women in Southern Africa is extremely high. Epidemiological studies suggest that pregnancy increases the risk of HIV sexual acquisition and that HIV infections acquired during pregnancy carry higher risk of mother-to-child transmission (MTCT). We analyze the potential benefits from extending the availability of effective microbicide to pregnant women (in addition to non-pregnant women) in a wide-scale intervention.Methods and Findings:A transmission dynamic model was designed to assess the impact of microbicide use in high HIV prevalence settings and to estimate proportions of new HIV infections, infections acquired during pregnancy, and MTCT prevented over 10 years. Our analysis suggests that consistent use of microbicide with 70% efficacy by 60% of non-pregnant women may prevent approximately 40% and 15% of new infections in women and men respectively over 10 years, assuming no additional increase in HIV risk to either partner during pregnancy (RRHIV/preg = 1). It may also prevent 8-15% MTCT depending on the increase in MTCT risk when HIV is acquired during pregnancy compared to before pregnancy (RRMTCT/preg). Extending the microbicides use during pregnancy may improve the effectiveness of the intervention by 10% (RRHIV/preg = 1) to 25% (RRHIV/preg = 2) and reduce the number of HIV infections acquired during pregnancy by 40% to 70% in different scenarios. It may add between 6% (RRHIV/preg = 1, RRMTCT/preg = 1) and 25% (RRHIV/preg = 2, RRMTCT/preg = 4) to the reduction in the residual MTCT.Conclusion:Providing safe and effective microbicide to pregnant women in the context of wide-scale interventions would be desirable as it would increase the effectiveness of the intervention and significantly reduce the number of HIV infections acquired during pregnancy. The projected benefits from covering pregnant women by the HIV prevention programs is more substantial in communities in which the sexual risk during pregnancy is elevated. © 2013 Dimitrov et al

Comparing Papanicolau smear, visual inspection with acetic acid and human papillomavirus cervical cancer screening methods among HIV-positive women by immune status and antiretroviral therapy

Background: A rigorous comparison of cervical cancer screening methods utilizing data on immune status, antiretroviral therapy (ART) and colposcopy-directed biopsy has not been performed among HIV-positive women. Methods: Between June and November 2009, 500 HIV-positive women were enrolled at an HIV treatment clinic in Nairobi, Kenya, and underwent Papanicolau (Pap) smear, visual inspection with acetic acid (VIA), human papillomavirus (HPV) and colposcopydirected biopsy (gold standard). Positive Pap smear (ASCUS, LSIL, HSIL), VIA, HPV and their combinations were compared with CIN2/3+. Sensitivity, specificity and AUC (sensitivity and 1-specificity) were compared using pairwise tests and multivariate logistic regression models that included age, CD4+ cell count and ART duration. Results:Of 500 enrolled, 498 samples were collected. On histology, there were 172 (35%) normal, 186 (37%) CIN1, 66 (13%) CIN2, 47 (9%) CIN3 and 27 (5%) indeterminate. Pap (ASCUS+) was the most sensitive screening method (92.7%), combination of both Pap (HSIL+) and VIA positive was the most specific (99.1%) and Pap (HSIL+) had the highest AUC (0.85). In multivariate analyses, CD4+ cell count of 350 cells/ml or less was associated with decreased HPV specificity (P=0.002); ART duration of less than 2 years was associated with decreased HPV (P=0.01) and VIA (P=0.03) specificity; and age less than 40 years was associated with increased VIA sensitivity (P Conclusion: Pap smear is a robust test among HIV-positive women regardless of immune status or ART duration. Results should be cautiously interpreted when using HPV among those younger, immunosuppressed or on ART less than 2 years, and when using VIA among those aged 40 years or more