Regeneration of plants from apical meristem tips and nodal segments of Arachis pintoi

The in vitro regeneration potential of shoot apical tips (2 to 3 mm in length), meristems (0.3 to 0.5 mm in length), and nodal segments (4 to 7 mm long with an axillary bud) of diploid (2n = 2x = 20) and triploid (2n = 3x = 30) cytotypes of Arachis pintoi was evaluated. Explants were cultured on MS medium supplemented with different concentrations and combinations of naphthaleneacetic acid (NAA) and benzyladenine (BA). In one experiment the effect of gibberellic acid was tested. The cultures were done in liquid and solid media. Plant regeneration can be readily achieved from all explants in one step of 30 d culture on MS + 0.01 mg/L each of NAA and BA or two steps consisting of 1) shoots regeneration through culture of explants on MS + 0.01 mg/L each of NAA and BA, and 2) induction of rooting in regenerated shoots by reculture on MS + 0.01 mg/L NAA. The plantlets were successfully transferred to pots in a greenhouse.Fil: Rey de Badaró, Hebe Yolanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; ArgentinaFil: Mroginski, Luis Amado. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; Argentin

Cryopreservation of plant germplasm in Argentina

This review describes the current status of development of methods for cryopreservation (at -196ºC) of plants germplasm in Argentina. Arachis pintoi, a forage legume, has been maintained as seeds using vitrification method. Additionally, apical meristems, shoot tips, and somatic embryos have been cryopreserved using encapsulation-dehydration. Zygotic embryos, encapsulated and dehydrated, have permitted the cryopreservation of seven species of the genus Ilex. Various explants (apical meristems, uninodal segments, buds and somatic embryos) of Melia azedarach have been cryopreserved using the encapsulation-dehydration method. Protocols based in encapsulation-dehydration have also been developed for shoot tips of Citrus sinensis, seeds and protocorms of Oncidum bifolium and anthers of Oryza sativa. Vitrification protocols have been developed forcryopreservation of shoot tips of Solanum tuberosum and seeds of Toona ciliata.Fil: Mroginski, Luis Amado. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; ArgentinaFil: Rey de Badaró, Hebe Yolanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; Argentin

Organogenesis and plant regeneration of Arachis villosa Benth. (Leguminosae) through leaf culture

With the aim of developing an efficient plant regeneration protocol, leaflet explants of three accessions of Arachis villosa Benth. (S2866, S2867 and L97) were cultured on basic Murashige and Skoog medium supplemented with different combinations of plant growth regulators: α-naphthalenacetic acid, indole-3-butyric acid, 6-benzylaminopurine, kinetin and thidiazuron. The accession L97 was the only one able to differentiate buds through indirect organogenesis. The most suitable combination for bud regeneration was the basic medium added with 13.62 μM thidiazuron and 4.44 μM 6-benzylaminopurine. These results show the important role of the genotype in morphogenetic responses and the organogenetic effect of thidiazuron in Arachis villosa accession L97. A thidiazuron lacking media (only 0.54 μM α-naphthalenacetic acid, 13.95 μM kinetin and 13.32 μM 6-benzylaminopurine were added) promoted the elongation of the regenerated buds. Adventitious rooting was achieved 90 days after the isolated shoots were transferred to a rooting medium containing 0.54 μM α-naphthalenacetic acid.Fil: Fontana, María Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; ArgentinaFil: Mroginski, Luis Amado. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; ArgentinaFil: Rey de Badaró, Hebe Yolanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Botánica del Nordeste. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias. Instituto de Botánica del Nordeste; Argentin

Probing the Structure of [NiFeSe] Hydrogenase with QM/MM Computations

The geometry and vibrational behavior of selenocysteine [NiFeSe] hydrogenase isolated from Desulfovibrio vulgaris Hildenborough have been investigated using a hybrid quantum mechanical (QM)/ molecular mechanical (MM) approach. Structural models have been built based on the three conformers identified in the recent crystal structure resolved at 1.3 Å from X-ray crystallography. In the models, a diamagnetic Ni2+ atom was modeled in combination with both Fe2+ and Fe3+ to investigate the effect of iron oxidation on geometry and vibrational frequency of the nonproteic ligands, CO and CN-, coordinated to the Fe atom. Overall, the QM/MM optimized geometries are in good agreement with the experimentally resolved geometries. Analysis of computed vibrational frequencies, in comparison with experimental Fourier-transform infrared (FTIR) frequencies, suggests that a mixture of conformers as well as Fe2+ and Fe3+ oxidation states may be responsible for the acquired vibrational spectra.DFG, 390540038, EXC 2008: UniSysCatDFG, 414044773, Open Access Publizieren 2019 - 2020 / Technische Universität BerlinEC/H2020/810856/EU/Twin to Illuminate Metals in Biology and Biocatalysis through Biospectroscopy/TIMB

About speedup improvement of classical genetic algoritms using CUDA environment

Due to the increasing computational cost required for the numerical solution of evolutionary systems and problems based on topological design, in the last years, many parallel algorithms have been developed in order to improve its performance. Perhaps, the main numerical tool used to solve heuristic problems is known as Genetic Algorithm (GA), deriving its name from the similarity to the evolutionary theory of Darwing. During the last decade, Graphic Processing Unit (GPU) has been used for computing acceleration due to the intrinsic vector-oriented design of the chip set. This gave race to a new programming paradigm: the General Purpose Computing on Graphics Processing Units (GPGPU). Which was replaced then by the Compute Unified Device Architecture (CUDA) environment in 2007. CUDA environment is probably the parallel computing platform and programming model that more heyday has had in recent years, mainly due to the low acquisition cost of the graphics processing units (GPUs) compared to a cluster with similar functional characteristics. Consequently, the number of GPU-CUDAs present in the top 500 fastest supercomputers in the world is constantly growing. In this work, a numerical algorithm developed in the NVIDIA CUDA platform capable of solving classical optimization functions usually employed as benchmarks (De Jong, Rastring and Ackley functions) is presented. The obtained results using a GeForce GTX 750 Ti GPU shown that the proposed code is a valuable tool for acceleration of GAs, improving its speedup in about 130%.Fil: Mroginski, Javier Luis. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Universidad Nacional del Nordeste. Facultad de Ingeniería; ArgentinaFil: Castro, Hugo Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Modelado e Innovación Tecnológica. Universidad Nacional del Nordeste. Facultad de Ciencias Exactas Naturales y Agrimensura. Instituto de Modelado e Innovación Tecnológica; ArgentinaXXII Congreso de Métodos Numéricos y sus AplicacionesCórdobaArgentinaUniversidad Tecnológica Nacional. Facultad Regional CórdobaAsociación Argentina de Mecánica Computaciona

A metaheuristic optimization algorithm for multimodal benchmark function in a GPU architecture

It is well known that the numerical solution of evolutionary systems and problems based on topological design requires a high computational power. In the last years, many parallel algorithms have been developed in order to improve its performance. Among them, genetic algorithms (GAs) are one of the most popular metaheuristic algorithms inspired by Darwin´s evolution theory. From the High Performance Computing (HPC) point of view, the CUDA environment is probably the parallel computing platform and programming model that more heyday has had in recent years, mainly due to the low acquisition cost of graphics processing units (GPUs) compared to a cluster with similar functional characteristics. Consequently, the number of GPU-CUDAs present in the top 500 fastest supercomputers in the world is constantly growing. In this paper, a numerical algorithm developed in the NVIDIA CUDA platform capable of solving classical optimization functions usually employed as benchmarks is presented. The obtained results demonstrate that GPUs are a valuable tool for acceleration of GAs and may enable its use in much complex problems. Also, a sensitivity analysis is carried out in order to show the relative weight of each GA operator in the whole computational cost of the algorithm.Fil: Mroginski, Javier Luis. Universidad Nacional del Nordeste. Facultad de Ingeniería; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; ArgentinaFil: Castro, Hugo Guillermo. Universidad Tecnológica Nacional. Facultad Reg. Resistencia; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Modelado e Innovación Tecnológica. Universidad Nacional del Nordeste. Facultad de Ciencias Exactas Naturales y Agrimensura. Instituto de Modelado e Innovación Tecnológica; Argentin

High performance reduced order modeling techniques based on optimal energy quadrature: application to geometrically non-linear multiscale inelastic material modeling

A High-Performance Reduced-Order Model (HPROM) technique, previously presented by the authors in the context of hierarchical multiscale models for non linear-materials undergoing infinitesimal strains, is generalized to deal with large deformation elasto-plastic problems. The proposed HPROM technique uses a Proper Orthogonal Decomposition procedure to build a reduced basis of the primary kinematical variable of the micro-scale problem, defined in terms of the micro-deformation gradient fluctuations. Then a Galerkin-projection, onto this reduced basis, is utilized to reduce the dimensionality of the micro-force balance equation, the stress homogenization equation and the effective macro-constitutive tangent tensor equation. Finally, a reduced goal-oriented quadrature rule is introduced to compute the non-affine terms of these equations. Main importance in this paper is given to the numerical assessment of the developed HPROM technique. The numerical experiments are performed on a micro-cell simulating a randomly distributed set of elastic inclusions embedded into an elasto-plastic matrix. This micro-structure is representative of a typical ductile metallic alloy. The HPROM technique applied to this type of problem displays high computational speed-ups, increasing with the complexity of the finite element model. From these results, we conclude that the proposed HPROM technique is an effective computational tool for modeling, with very large speed-ups and acceptable accuracy levels with respect to the high-fidelity case, the multiscale behavior of heterogeneous materials subjected to large deformations involving two well-separated scales of length.Peer ReviewedPostprint (author's final draft

Enhanced seed germination of Ilex dumosa R. (Aquifoliaceae) through in vitro culture of cut pyrenes

An in vitro culture protocol was developed that increased the germination percentage and decreased the lag time to germination for Ilex dumosa R. pyrenes as a tool for replacing the laborious task of embryo rescue technique. This method involves transversely cutting surface-sterilized pyrenes with a scalpel blade, then placing the micropylar one-third end with the rudimentary embryo (0.25 mm long) on solidified (agar 0.65%) quarter-strength salts and vitamins of Murashige and Skoog, 1962 medium with 3% sucrose, and incubating in a growth room at 27 ± 2 8C with a 14-h photoperiod (116 mmolm?2 s?1). Most of the cut pyrenes (greater than 50%) germinated within the first month after inoculation and achieved maximum germination (70%) in 2 months compared with whole pyrenes, which began to germinate 3 months after sowing and required more than 8 months for maximum germination (37%). Moreover, the germination percentage of cut pyrenes was significantly higher than the germination of isolated embryos (34%). Thus, the cut pyrenes culture is a simpler and more effective technique than embryo rescue. Easily, on average, a trained operator is able to culture ~1000 cut pyrenes per day instead of ~100 isolated embryos.Fil: Dolce, Natalia Raquel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Nordeste. Instituto de Botánica del Nordeste (i); Argentina. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; ArgentinaFil: Mroginski, Luis Amado. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; ArgentinaFil: Rey, Hebe Yolanda. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Nordeste. Instituto de Botánica del Nordeste (i); Argentina. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentin

Veinticinco años con el cultivo de tejidos de leguminosas

En la presente comunicación se detallan las investigaciones llevadas a cabo por el autor en el estudio de cultivos de leguminosas.Contiene bibliografíaAcademia Nacional de Agronomía y Veterinari

Structural and electronic properties of the active site of [ZnFe] SulE

The function of the recently isolated sulerythrin (SulE) has been investigated using a combination of structural and electronic analyses based on quantum mechanical calculations. In the SulE structure of Fushinobu et al. (2003), isolated from a strictly aerobic archaeon, Sulfolobus tokadaii, a dioxygen-containing species was tentatively included at the active site during crystallographic refinement although the substrate specificity of SulE remains unclear. Studies have suggested that a structurally related enzyme, rubrerythrin, functions as a hydrogen peroxide reductase. Since SulE is a truncated version of rubrerythrin, the enzymes are hypothesized to function similarly. Hence, using available X-ray crystallography data (1.7 Å), we constructed various models of SulE containing a ZnII–Fe active site, differing in the nature of the substrate specificity (O2, H2O2), the oxidation level and the spin state of the iron ion, and the protonation states of the coordinating glutamate residues. Also, the substrate H2O2 is modeled in two possible configurations, differing in the orientation of the hydrogen atoms. Overall, the optimized geometries with an O2 substrate do not show good agreement with the experimentally resolved geometry. In contrast, excellent agreement between crystal structure arrangement and optimized geometries is achieved considering a H2O2 substrate and FeII in both spin states, when Glu92 is protonated. These results suggest that the dioxo species detected at the [ZnFe] active site of sulerythrin is H2O2, rather than an O2 molecule in agreement with experimental data indicating that only the diferrous oxidation state of the dimetal site in rubrerythrin reacts rapidly with H2O2. Based on our computations, we proposed a possible reaction pathway for substrate binding at the ZnFeII site of SulE with a H2O2 substrate. In this reaction pathway, Fe or another electron donor, such as NAD(P)H, catalyzes the reduction of H2O2 to water at the zinc–iron site