European Springtails Orchesella cincta (L.) and O. villosa (L.) (Collembola: Entomobryidae): Vagabond Species of the Nearctic Region

North American specimens of the European invasive springtail Orchesella cincta (L.) were compared to several published European haplotypes in a phylogenetic framework using likelihood methods based on a portion of cytochrome oxidase II (cox2). Our analyses provide direct evidence of at least two distinct introductions of this invasive to North America from different regions of Europe. Additional introduction events cannot be ruled out because detection is limited by extremely low sequence divergence among populations inhabiting different regions of the continent. Orchesella villosa (L.), another invasive from Europe, is another candidate for multiple introductions. Herein we include the cox2 sequence from single specimens of O. villosa from Maine and Oregon. Although these two specimens are identical in sequence, they differ from a published sequence from a European specimen by 15%, indicating significant undocumented genetic variation in the natal range of O. villosa. Additional sampling of Nearctic populations of O. villosa might reveal the same situation reported herein for O. cincta

Exploits in the tropics

https://place.asburyseminary.edu/firstfruitsheritagematerial/1163/thumbnail.jp

3D-Printed Morphing Wings for Controlling Yaw on Flying-Wing Aircraft

The flaps on an airplane wing are used to control the aircraft during flight. These flaps traditionally have at most three articulation or hinge points. Recent studies have shown improved flap efficiency using a conformal flap, which deforms following a curved shape. Much of aircraft improvement comes through increasing its efficiency during flight. This efficiency is generally improved by decreasing the drag force on the aircraft. A potential solution to decrease drag is to remove additional lifting surfaces, such as the horizontal and vertical stabilizer ubiquitous on general aviation aircraft. These additional lifting surfaces are used to trim and control the aircraft during flight. A flying-wing aircraft, which has no additional lifting surfaces, is trimmed and controlled using multiple flaps along the main wing. 3D-printing the mechanisms used to control these flaps has significant advantages. 3D-printing is fast, cheap, easy to repeat, easy to replicate, and produces durable parts. Two morphing mechanisms manufactured using 3D-printing are presented as viable solutions to demonstrate yaw control on a flying-wing aircraft. The Airfoil Recambering Compliant System (ARCS) is presented as a solution for a wing using a single flap with multiple actuators. The Kinetic Internal Nexus Compliant System (KINCS) is presented as a solution for a wing using multiple flaps, each with a single actuator. The final KINCS design used for a prototype flying-wing aircraft is presented

Exploits in the tropics

https://place.asburyseminary.edu/ecommonsatsdigitalresources/1551/thumbnail.jp

Modeling the effect of copper availability on bacterial denitrification

When denitrifying bacteria such as Paracoccus denitrificans respire anaerobically they convert nitrate to dinitrogen gas via a pathway which includes the potent greenhouse gas, nitrous oxide (NO). The copper-dependent enzyme Nitrous Oxide reductase (Nos) catalyzes the reduction of NO to dinitrogen. In low-copper conditions, recent experiments in chemostats have demonstrated that Nos efficiency decreases resulting in significant NO emissions. For the first time, a chemostat-based mathematical model is developed that describes the anaerobic denitrification pathway based on Michaelis-Menten kinetics and published kinetic parameters. The model predicts steady-state enzyme levels from experimental data. For low copper concentrations, the predicted Nos level is significantly reduced, whereas the levels for the non copper-dependent reductases in the pathway remain relatively unaffected. The model provides time courses for the pathway metabolites that accurately reflect previously published experimental data. In the absence of experimental data purely predictive analyses can also be readily performed by calculating the relative Nos level directly from the copper concentration. Here, the model quantitatively estimates the increasing level of emitted NO as the copper level decreases. We have developed a mathematical model for the denitrification pathway based on existing experimental results, Michaelis-Menten kinetics and experimentally obtained kinetic constants. This is the first such model to incorporate the copper concentration in order to predict emissions of the potent greenhouse gas, nitrous oxide (NO), as well as the other nitrogenous compounds in the pathway. The model predicts increasing NO emissions as the copper level is lowered, in agreement with experimental observations in chemostats. © 2013 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.

Novel Distances for Dollo Data

We investigate distances on binary (presence/absence) data in the context of a Dollo process, where a trait can only arise once on a phylogenetic tree but may be lost many times. We introduce a novel distance, the Additive Dollo Distance (ADD), which is consistent for data generated under a Dollo model, and show that it has some useful theoretical properties including an intriguing link to the LogDet distance. Simulations of Dollo data are used to compare a number of binary distances including ADD, LogDet, Nei Li and some simple, but to our knowledge previously unstudied, variations on common binary distances. The simulations suggest that ADD outperforms other distances on Dollo data. Interestingly, we found that the LogDet distance performs poorly in the context of a Dollo process, which may have implications for its use in connection with conditioned genome reconstruction. We apply the ADD to two Diversity Arrays Technology (DArT) datasets, one that broadly covers Eucalyptus species and one that focuses on the Eucalyptus series Adnataria. We also reanalyse gene family presence/absence data on bacteria from the COG database and compare the results to previous phylogenies estimated using the conditioned genome reconstruction approach

Representing Partitions on Trees

In evolutionary biology, biologists often face the problem of constructing a phylogenetic tree on a set X of species from a multiset Π of partitions corresponding to various attributes of these species. One approach that is used to solve this problem is to try instead to associate a tree (or even a network) to the multiset ΣΠ consisting of all those bipartitions {A,X − A} with A a part of some partition in Π. The rational behind this approach is that a phylogenetic tree with leaf set X can be uniquely represented by the set of bipartitions of X induced by its edges. Motivated by these considerations, given a multiset Σ of bipartitions corresponding to a phylogenetic tree on X, in this paper we introduce and study the set P(Σ) consisting of those multisets of partitions Π of X with ΣΠ = Σ. More specifically, we characterize when P(Σ) is non-empty, and also identify some partitions in P(Σ) that are of maximum and minimum size. We also show that it is NP-complete to decide when P(Σ) is non-empty in case Σ is an arbitrary multiset of bipartitions of X. Ultimately, we hope that by gaining a better understanding of the mapping that takes an arbitrary partition system Π to the multiset ΣΠ, we will obtain new insights into the use of median networks and, more generally, split-networks to visualize sets of partitions

An Alternate Dimensionless Form of the Linearized Rigid-Body Aircraft Equations of Motion with Emphasis on Dynamic Parameters

The equations of motion for an aircraft can be linearized about a reference condition within the assumptions of small disturbances and linear aerodynamics. The resulting system of equations is typically solved to obtain the eigenvalues and eigenvectors that describe the small disturbance motion of the aircraft. Results from such an analysis are often used to predict the rigid-body dynamic modes of the aircraft and associated handling qualities. This process is typically carried out in dimensional form in most text books, or in nondimensional form using dimensionless parameters rooted in aerodynamic theory. Here we apply Buckingham’s Pi theorem to obtain nondimensional parameters based on the aircraft rigid-body dynamics rather than aerodynamics. This approach may be more useful for understanding how aircraft dynamics scale with appropriate design parameters

Simplified Mass and Inertial Estimates for Aircraft with Components of Constant Density

Aircraft mass and inertial properties are required for predicting the dynamics and handling qualities of aircraft. However, such properties can be difficult to estimate since these depend on the external shape and internal structure, systems, and mass distributions within the airframe. Mass and inertial properties of aircraft are often predicted using computer-aided design software, or measured using various experimental techniques. The present paper presents a method for quickly predicting the mass and inertial properties of complete aircraft consisting of components of constant density. Although the assumption of constant density may appear limiting, the method presented in this paper can be used to approximate mass properties of complex internal structures. Inertial estimates for rectangular cuboids, cylinders, spheres, wing segments, and rotors are presented here. The influence of geometric properties of wing segments such as sweep, taper, airfoil geometry, and dihedral are included. The utility of the method is presented and the accuracy is evaluated with various test cases